Carg07792 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07792
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 1187750 .. 1188554 (-)
RNA-Seq ExpressionCarg07792
SyntenyCarg07792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCCTCTTGAAAAACCATGTTTCGGCATATTTGAGGTTAAGAGCATCAAGACTCCTCAGTATGTTGGTCTACTACTTGCTTGGCCTTCTGCTGCTAGTTTCGTTCCAGAGGCAAATTGCAAGATCAACCTATTCCTCTTCATTCAATTTCTTCTGATATCAGCAACGCTATCTCCACGTGACATGACTGTGTTCCCTGTGAAGTGTTCATACTGAGGATCGTGCTGCTGCTGAATCTCCATTAACCTGCATCTGGGTCATCTCGAGATAATGAGATGAGCATTAGTTGAATCTTTTCTCCCATTAAGTTGAAGCCCTTGCTCTTAAAAGGTGGCAAAAGGCTGCTGCTTTGGCGACTTATTCACTCCAACATGTTTGGGAGATCATATTGGCGGATCAAATTTCTATTTTTTTATTTTTGATGTGTCAATATCTATTCTATTCAGGAATGTTTTCTTGATCTGCGAACTCATATTACTCACATTAGTAAACTAACCCTTAAATGTTCCACATCTAAATATAACCACGCACCCCGCCCCCATTGATGTCATTCGAGCTCGAGAACAATGTAGTCGGTGATAGAGTTGTAAAGTGAGTTCTTTGAATACTATTTCTCCCTGGTTGTTTGACATGTCAACAGATACAAATCTTAATCTTCTAATTCCATTTGAACGATACTGAATTCACATGTTGTTGTTGTTTTCGTTCGTATCCAGATCGTAAGACTCTTATAATTGGTCTTCCTAAGTTTGTTTGATTCTGTTACAGACAGGGATTTGCCTTGAATTGGAAGACCAATTGA

mRNA sequence

ATGACCCCTCTTGAAAAACCATGTTTCGGCATATTTGAGGTTAAGAGCATCAAGACTCCTCAGTATGTTGGTCTACTACTTGCTTGGCCTTCTGCTGCTAGTTTCGTTCCAGAGGCAAATTGCAAGATCAACCTATTCCTCTTCATTCAATTTCTTCTGATATCAGCAACGCTATCTCCACGTGACATGACTGTGTTCCCTGTGAAACAGGGATTTGCCTTGAATTGGAAGACCAATTGA

Coding sequence (CDS)

ATGACCCCTCTTGAAAAACCATGTTTCGGCATATTTGAGGTTAAGAGCATCAAGACTCCTCAGTATGTTGGTCTACTACTTGCTTGGCCTTCTGCTGCTAGTTTCGTTCCAGAGGCAAATTGCAAGATCAACCTATTCCTCTTCATTCAATTTCTTCTGATATCAGCAACGCTATCTCCACGTGACATGACTGTGTTCCCTGTGAAACAGGGATTTGCCTTGAATTGGAAGACCAATTGA

Protein sequence

MTPLEKPCFGIFEVKSIKTPQYVGLLLAWPSAASFVPEANCKINLFLFIQFLLISATLSPRDMTVFPVKQGFALNWKTN
Homology
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BLAST of Carg07792 vs. NCBI nr
Match: KAG7026583.1 (hypothetical protein SDJN02_10585, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 7.7e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MTPLEKPCFGIFEVKSIKTPQYVGLLLAWPSAASFVPEANCKINLFLFIQFLLISATLSP 60
          MTPLEKPCFGIFEVKSIKTPQYVGLLLAWPSAASFVPEANCKINLFLFIQFLLISATLSP
Sbjct: 1  MTPLEKPCFGIFEVKSIKTPQYVGLLLAWPSAASFVPEANCKINLFLFIQFLLISATLSP 60

Query: 61 RDMTVFPVKQGFALNWKTN 80
          RDMTVFPVKQGFALNWKTN
Sbjct: 61 RDMTVFPVKQGFALNWKTN 79

The following BLAST results are available for this feature:
BLAST of Carg07792 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026583.17.7e-38100.00hypothetical protein SDJN02_10585, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg07792 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07792 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07792 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07792-RACarg07792-RAmRNA