Carg07777 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07777
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B3 domain-containing transcription factor LEC2-like
Location	Carg_Chr07: 1124618 .. 1125700 (+)
RNA-Seq Expression	Carg07777
Synteny	Carg07777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACGACGACGACGACCACCGCCCCCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCTTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTTCTCTCCTACGGCTTCCCCATTGGAAACGACCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTGGGCGATCCATTAAAACATTTCATTTTATTTATTTATTCATTTAATTAGAAACTGATTTCTTTCTTTTTTTTGGTGGGACAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGGTTTGTACTTTCAGATCTCTGTCTTTTTTTTCCCCTCCTCATCCAATAGAACAGTGAAAATGAAATAAAACAATCCAAAAAAAGGATAATTAAAAACCCTATTATTGTGTTTTTTTTTTTTTTAATTTTCCAAATTTGCTGATGATTTTAACACAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTAAGGCAAAACCCCTTCATTTATTATCATTAATGGAAGCTTTGGAAATTTAACATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCAAATTCTGTTTTGTTTTAAATCCGTGTAGGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGTCTCAATCCCACAAATTGA

mRNA sequence

ATGGACGACGACGACGACGACCACCGCCCCCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCTTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTTCTCTCCTACGGCTTCCCCATTGGAAACGACCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGTCTCAATCCCACAAATTGA

Coding sequence (CDS)

ATGGACGACGACGACGACGACCACCGCCCCCGCCGCCGCAACCACCGCCACAACCTCAACCTTCCTCCGTTCCCCCCCACCACTCCCCTCTCTCCTCCTCCTCCTCCTCCTAAAAATTCCCCCGTCCCAATTCTTCCCCACCCGCCCTTGGGATTCTCCTTCCGCACTCCACAATCCTATTTCGTCCCACCCTCCTTTCTCTCCTACGGCTTCCCCATTGGAAACGACCCTATCAATCCCCTTTTGCCTAAAGACGATGGCCGAAGAGGCTTGGATGCTTGGACCACTAAAGTGGCTAGAAGTAAGAGAAGACTCGCCCGCCAAAGAAGCCTCAGCGTCACTAAACCCCCTTCTTCTTCCTCCTCCTCTTCTGGGCTCGCCGGTAGCAGCGACCACCATTCCAAACGAATAACAGTAACTCCTTCTCAACCCAACAGAACCCACAATCTCAATCTCTCCACCCTCAGCACCCCAAATAAGGTATTGAGAATATTGCTGAAGAAAGAGCTGAAGAACAGTGATGTCGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAAGCTGAAGAGAATCTTCCATTTCTGAGTGATAAGGAAGGAATGCAAATTTTGATAAGAGATGTGAATTCGAACAAGAAATGGTCCATGAAATACAAGTACTGGGCAAACAACAGGAGTAGAATGTATGTTCTTGAAAGCACAGGTCTCAATCCCACAAATTGA

Protein sequence

MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSYFVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTGLNPTN

Homology

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BLAST of Carg07777 vs. NCBI nr
Match: KAG7026568.1 (B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 470.7 bits (1210), Expect = 7.5e-129
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSY 60
           MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSY
Sbjct: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSY 60

Query: 61  FVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120
           FVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS
Sbjct: 61  FVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120

Query: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180
           SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR
Sbjct: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180

Query: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTGLNPTN 240
           IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTGLNPTN
Sbjct: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTGLNPTN 240

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BLAST of Carg07777 vs. NCBI nr
Match: XP_022926805.1 (B3 domain-containing transcription factor LEC2-like [Cucurbita moschata])

HSP 1 Score: 450.7 bits (1158), Expect = 8.1e-123
Identity = 231/235 (98.30%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSY 60
           MDDDDDDHR RRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFS RTPQSY
Sbjct: 1   MDDDDDDHRHRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSLRTPQSY 60

Query: 61  FVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120
           FVPPS LSYGFPIGN+PINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS
Sbjct: 61  FVPPSLLSYGFPIGNEPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120

Query: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180
           SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR
Sbjct: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180

Query: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG
Sbjct: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 235

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BLAST of Carg07777 vs. NCBI nr
Match: KAG6594597.1 (B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 448.7 bits (1153), Expect = 3.1e-122
Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLS--PPPPPPKNSPVPILPHPPLGFSFRTPQ 60
           MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLS  PPPPPPKNSPVPILPHPPLGFS RTPQ
Sbjct: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPPPKNSPVPILPHPPLGFSLRTPQ 60

Query: 61  SYFVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPS 120
           SYFVPPS LSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPS
Sbjct: 61  SYFVPPSLLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPS 120

Query: 121 SSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSL 180
           SSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTP+KVLRILLKKELKNSDVGSL
Sbjct: 121 SSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPDKVLRILLKKELKNSDVGSL 180

Query: 181 GRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           GRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG
Sbjct: 181 GRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 237

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BLAST of Carg07777 vs. NCBI nr
Match: XP_023518478.1 (B3 domain-containing transcription factor LEC2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 224/235 (95.32%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSY 60
           MDDDD+DHR RRR+HRHNLNLPPFPPT+PLSPPPPPP+NSPVPILPHPPLGFS RTPQSY
Sbjct: 1   MDDDDEDHRRRRRDHRHNLNLPPFPPTSPLSPPPPPPQNSPVPILPHPPLGFSLRTPQSY 60

Query: 61  FVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120
           FVPPS +SYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSV KPPSSS
Sbjct: 61  FVPPSLISYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVAKPPSSS 120

Query: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180
           SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTP+KVLRILLKKELKNSDVGSLGR
Sbjct: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPDKVLRILLKKELKNSDVGSLGR 180

Query: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKW+MKYKYWANNRSRMYVLESTG
Sbjct: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWAMKYKYWANNRSRMYVLESTG 235

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BLAST of Carg07777 vs. NCBI nr
Match: XP_023003348.1 (B3 domain-containing transcription factor LEC2-like [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 3.8e-112
Identity = 220/238 (92.44%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MDDDDDDHRPR-RRN--HRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTP 60
           MDDDD+DHR R RRN  HRHNLNLPPFPPTT LS PPPPP+NSPVPILPHPPLGFS RTP
Sbjct: 1   MDDDDEDHRLRLRRNHRHRHNLNLPPFPPTTALS-PPPPPQNSPVPILPHPPLGFSLRTP 60

Query: 61  QSYFVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPP 120
           QSYFVPPS +SYGFPI NDPINPLLPKDDGRRGLDAW+TKVARSKRRLARQRSLSVTKPP
Sbjct: 61  QSYFVPPSLVSYGFPIENDPINPLLPKDDGRRGLDAWSTKVARSKRRLARQRSLSVTKPP 120

Query: 121 SSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGS 180
           SSSSSSSG AGSSDHHSK ITVTPSQPNRTHNLNLSTLSTP+KVLRILLKKELKNSDVGS
Sbjct: 121 SSSSSSSGFAGSSDHHSKGITVTPSQPNRTHNLNLSTLSTPDKVLRILLKKELKNSDVGS 180

Query: 181 LGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           LGRIVLPKREAEENLPFL+DKEGMQI+IRDVNSNKKWSMKYKYWANNRSRMYVLESTG
Sbjct: 181 LGRIVLPKREAEENLPFLTDKEGMQIVIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 237

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BLAST of Carg07777 vs. ExPASy Swiss-Prot
Match: Q1PFR7 (B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana OX=3702 GN=LEC2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-22
Identity = 90/211 (42.65%), Postives = 118/211 (55.92%), Query Frame = 0


Query: 32  PPPPPPKNSPVPILPHPPLGFSFRTPQSYFVPPSFLSYGFPIGNDPINPLLPKDDGRRGL 91
           PP   P      ++   P+  S   PQ   +P +    G   G+   NP L ++ G   L
Sbjct: 47  PPFSYPVEQMAAVMNPQPVYLSECYPQ---IPVT--QTGSEFGSLVGNPCLWQERG-GFL 106

Query: 92  DAWTTKVARSKRRLARQRSLSVTKPPSSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLN 151
           D   TK+AR  R+ A  RS + + P SS S            SKR  +     N  +N+ 
Sbjct: 107 DPRMTKMARINRKNAMMRSRNNSSPNSSPSELV--------DSKRQLM---MLNLKNNVQ 166

Query: 152 LS-------TLSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQIL 211
           +S         +  NK LR+L +KELKNSDVGSLGRIVLPKR+AE NLP LSDKEG+ + 
Sbjct: 167 ISDKKDSYQQSTFDNKKLRVLCEKELKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIVVQ 226

Query: 212 IRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           +RDV S + WS KYK+W+NN+SRMYVLE+TG
Sbjct: 227 MRDVFSMQSWSFKYKFWSNNKSRMYVLENTG 240

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BLAST of Carg07777 vs. ExPASy Swiss-Prot
Match: Q01593 (B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana OX=3702 GN=ABI3 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-19
Identity = 43/78 (55.13%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 158 PNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMK 217
           P K LR LL+K LK SDVG+LGRIVLPK+EAE +LP L  ++G+ + + D+ +++ W+M+
Sbjct: 564 PEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMR 623

Query: 218 YKYWANNRSRMYVLESTG 236
           Y++W NN+SRMY+LE+TG
Sbjct: 624 YRFWPNNKSRMYLLENTG 641

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BLAST of Carg07777 vs. ExPASy Swiss-Prot
Match: Q7XKC5 (B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0676600 PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-19
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 142 SQP-NRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEG 201
           S+P + +HN   ST+    +  R++L+KEL NSDVG++GRIV+PKR+AE +LP L  +EG
Sbjct: 272 SEPSSMSHNSANSTIRFNCREYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREG 331

Query: 202 MQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           + + + D      W+ KY++W NN+SRMYVLESTG
Sbjct: 332 VMLKMDDFKLETTWNFKYRFWPNNKSRMYVLESTG 366

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BLAST of Carg07777 vs. ExPASy Swiss-Prot
Match: P37398 (B3 domain-containing protein VP1 OS=Oryza sativa subsp. japonica OX=39947 GN=VP1 PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 159 NKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKY 218
           +K LR LL+K LK SDVGSLGRIVLPK EAE +LP L  ++G+ I + D+ +++ W+M+Y
Sbjct: 530 DKNLRFLLQKVLKQSDVGSLGRIVLPK-EAEVHLPELKTRDGVSIPMEDIGTSQVWNMRY 589

Query: 219 KYWANNRSRMYVLESTG 236
           ++W NN+SRMY+LE+TG
Sbjct: 590 RFWPNNKSRMYLLENTG 605

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BLAST of Carg07777 vs. ExPASy Swiss-Prot
Match: Q7XKC4 (Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0676650 PE=3 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 8.9e-16
Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 95  TTKVARSKRRLARQRSLSVTKPPSSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLST 154
           + K++       + +  +V  PP     S   +  +D +  +  V+   P+   N     
Sbjct: 232 SAKISNGPTYTKKAKKSNVKDPPIVFRRSDMESEKNDDNPDQTPVS-EPPSMNQNGENLI 291

Query: 155 LSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKW 214
           +    +  R++L+KEL NSDVG++GRIV+PKR+AE +LP L  +EG+ + + D      W
Sbjct: 292 IRFNCREYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTW 351

Query: 215 SMKYKYWANNRSRMYVLESTG 236
           + KY++W NN+SRMYVLESTG
Sbjct: 352 NFKYRFWPNNKSRMYVLESTG 371

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BLAST of Carg07777 vs. ExPASy TrEMBL
Match: A0A6J1EM52 (B3 domain-containing transcription factor LEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111433814 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 3.9e-123
Identity = 231/235 (98.30%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQSY 60
           MDDDDDDHR RRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFS RTPQSY
Sbjct: 1   MDDDDDDHRHRRRNHRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSLRTPQSY 60

Query: 61  FVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120
           FVPPS LSYGFPIGN+PINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS
Sbjct: 61  FVPPSLLSYGFPIGNEPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPPSSS 120

Query: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180
           SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR
Sbjct: 121 SSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGSLGR 180

Query: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG
Sbjct: 181 IVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 235

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BLAST of Carg07777 vs. ExPASy TrEMBL
Match: A0A6J1KW90 (B3 domain-containing transcription factor LEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111496981 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 220/238 (92.44%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MDDDDDDHRPR-RRN--HRHNLNLPPFPPTTPLSPPPPPPKNSPVPILPHPPLGFSFRTP 60
           MDDDD+DHR R RRN  HRHNLNLPPFPPTT LS PPPPP+NSPVPILPHPPLGFS RTP
Sbjct: 1   MDDDDEDHRLRLRRNHRHRHNLNLPPFPPTTALS-PPPPPQNSPVPILPHPPLGFSLRTP 60

Query: 61  QSYFVPPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRRLARQRSLSVTKPP 120
           QSYFVPPS +SYGFPI NDPINPLLPKDDGRRGLDAW+TKVARSKRRLARQRSLSVTKPP
Sbjct: 61  QSYFVPPSLVSYGFPIENDPINPLLPKDDGRRGLDAWSTKVARSKRRLARQRSLSVTKPP 120

Query: 121 SSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLNLSTLSTPNKVLRILLKKELKNSDVGS 180
           SSSSSSSG AGSSDHHSK ITVTPSQPNRTHNLNLSTLSTP+KVLRILLKKELKNSDVGS
Sbjct: 121 SSSSSSSGFAGSSDHHSKGITVTPSQPNRTHNLNLSTLSTPDKVLRILLKKELKNSDVGS 180

Query: 181 LGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           LGRIVLPKREAEENLPFL+DKEGMQI+IRDVNSNKKWSMKYKYWANNRSRMYVLESTG
Sbjct: 181 LGRIVLPKREAEENLPFLTDKEGMQIVIRDVNSNKKWSMKYKYWANNRSRMYVLESTG 237

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BLAST of Carg07777 vs. ExPASy TrEMBL
Match: A0A0A0KND0 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517930 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 4.6e-55
Identity = 141/259 (54.44%), Postives = 171/259 (66.02%), Query Frame = 0


Query: 5   DDDHRPRRRNHRHNLNLPPFP------PTTPLSPPPPPPKNSPVPILPHPPLGFSFRTPQ 64
           DD H P + +H H+  LPPFP      PTT L  PP  P   P  +       FS   PQ
Sbjct: 2   DDHHNPHQNHHHHHHELPPFPSTAVTAPTTNLHSPPQNPCYLPPTLSQTCLASFSSSAPQ 61

Query: 65  SYFV--------------PPSFLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKVARSKRR 124
           S+F                P+ LSYG    N  I  + PKDDG++ LDAW+TKVAR+ RR
Sbjct: 62  SFFSSSHEPQPLAPRFPHSPTLLSYGLDEPN--IQSVFPKDDGKKALDAWSTKVARTNRR 121

Query: 125 LARQRSLSVTKPPSSSSSSSGLAGSSDHHSKRITVT--PSQPNRTHNLNLSTLSTP-NKV 184
           LARQR+L+     SSSSSS    G  D +SK +T+T  P+  +  +N +L T  TP NK+
Sbjct: 122 LARQRTLTSFTTRSSSSSS---CGYHDDYSKGLTITHFPNTDSSHNNRHLFTFCTPDNKI 181

Query: 185 LRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYW 241
           LR+LLKKELKNSDVGSLGRIVLPKREAEENLPFL+DKEG+QI++RDVNSN++W+MKYKYW
Sbjct: 182 LRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGLQIVVRDVNSNRRWTMKYKYW 241

[Close]

BLAST of Carg07777 vs. ExPASy TrEMBL
Match: A0A6J1IQY4 (B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-53
Identity = 150/265 (56.60%), Postives = 179/265 (67.55%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNL----NLPPFPPTTPLSPPPPPPKNSPV-PILPHPPLGFSFR 60
           MDDD         NH H+L    +      T  LSPPPPPP++S + PIL    LGFS  
Sbjct: 1   MDDD---------NHHHDLAPLSSATLSAATILLSPPPPPPQDSHLPPILSQHCLGFSSP 60

Query: 61  TPQSYF---------------VPPS--FLSYGFPIGNDPINPLLPKDDGRRGLDAWTTKV 120
            P+SYF                PPS  FLS+GF   ND    LL KD+GRR LDAW+TKV
Sbjct: 61  APKSYFFTNPPPPLHDQLPSHFPPSSAFLSHGF---NDLTTSLLQKDEGRRVLDAWSTKV 120

Query: 121 ARSKRRLARQRSLSVTKPPSSSS----SSSGLAGSSDHHSKRITVTPSQPNRTH---NLN 180
           ARSKRRLARQR+L++++  SSSS    SSSG   ++D +SK +  T      TH   N N
Sbjct: 121 ARSKRRLARQRTLTLSRISSSSSSSSASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPN 180

Query: 181 LSTLSTP-NKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNS 236
             TL TP NK+LR+LLKK+LKNSDVGSLGRIVLPKREAEENLP L+DKEG+QI++R+V+S
Sbjct: 181 NFTLCTPDNKILRMLLKKDLKNSDVGSLGRIVLPKREAEENLPLLTDKEGIQIVMREVHS 240

[Close]

BLAST of Carg07777 vs. ExPASy TrEMBL
Match: A0A6J1EJR4 (B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=LOC111433235 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52
Identity = 149/274 (54.38%), Postives = 178/274 (64.96%), Query Frame = 0


Query: 1   MDDDDDDHRPRRRNHRHNLNLPPFPPTT------PLSPPPPPPKNSPV-PILPHPPLGFS 60
           MDDD+           H+ +LPP    T       LS PPPPP++S + PIL    LGFS
Sbjct: 1   MDDDN-----------HHYDLPPLSSATLSAATILLSHPPPPPQDSHLPPILSQHCLGFS 60

Query: 61  FRTPQSYF---------------------VPPS--FLSYGFPIGNDPINPLLPKDDGRRG 120
              P+SYF                      PPS  FLSYGF   ND    L  KD+GRR 
Sbjct: 61  SPAPKSYFFTNPPPPPPPPPPPHDQPPSHFPPSSAFLSYGF---NDLSTSLFQKDEGRRV 120

Query: 121 LDAWTTKVARSKRRLARQRSLSVTKPPSSSS-----SSSGLAGSSDHHSKRITVTPSQPN 180
           LDAW+TKVARSKRRLARQR+L++++  SSSS     SSSG   ++D +SK +  T     
Sbjct: 121 LDAWSTKVARSKRRLARQRTLTLSRTSSSSSSTSAASSSGFGYNNDEYSKGLMATHFLNT 180

Query: 181 RTH---NLNLSTLSTP-NKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGM 236
            TH   N N  TL TP NK+LR+LLKK+LKNSDVGSLGRIVLPKREAEENLP L+DKEG+
Sbjct: 181 DTHNNANPNNFTLCTPDNKILRMLLKKDLKNSDVGSLGRIVLPKREAEENLPLLTDKEGI 240

[Close]

BLAST of Carg07777 vs. TAIR 10
Match: AT1G28300.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-23
Identity = 90/211 (42.65%), Postives = 118/211 (55.92%), Query Frame = 0


Query: 32  PPPPPPKNSPVPILPHPPLGFSFRTPQSYFVPPSFLSYGFPIGNDPINPLLPKDDGRRGL 91
           PP   P      ++   P+  S   PQ   +P +    G   G+   NP L ++ G   L
Sbjct: 47  PPFSYPVEQMAAVMNPQPVYLSECYPQ---IPVT--QTGSEFGSLVGNPCLWQERG-GFL 106

Query: 92  DAWTTKVARSKRRLARQRSLSVTKPPSSSSSSSGLAGSSDHHSKRITVTPSQPNRTHNLN 151
           D   TK+AR  R+ A  RS + + P SS S            SKR  +     N  +N+ 
Sbjct: 107 DPRMTKMARINRKNAMMRSRNNSSPNSSPSELV--------DSKRQLM---MLNLKNNVQ 166

Query: 152 LS-------TLSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQIL 211
           +S         +  NK LR+L +KELKNSDVGSLGRIVLPKR+AE NLP LSDKEG+ + 
Sbjct: 167 ISDKKDSYQQSTFDNKKLRVLCEKELKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIVVQ 226

Query: 212 IRDVNSNKKWSMKYKYWANNRSRMYVLESTG 236
           +RDV S + WS KYK+W+NN+SRMYVLE+TG
Sbjct: 227 MRDVFSMQSWSFKYKFWSNNKSRMYVLENTG 240

[Close]

BLAST of Carg07777 vs. TAIR 10
Match: AT3G24650.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-21
Identity = 43/78 (55.13%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 158 PNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMK 217
           P K LR LL+K LK SDVG+LGRIVLPK+EAE +LP L  ++G+ + + D+ +++ W+M+
Sbjct: 564 PEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMR 623

Query: 218 YKYWANNRSRMYVLESTG 236
           Y++W NN+SRMY+LE+TG
Sbjct: 624 YRFWPNNKSRMYLLENTG 641

[Close]

BLAST of Carg07777 vs. TAIR 10
Match: AT3G26790.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 162 LRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYW 221
           LR L +KELKNSDV SL R++LPK+ AE +LP L  KEG+ I + D++    W+ KY+YW
Sbjct: 88  LRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYW 147

Query: 222 ANNRSRMYVLESTG 236
            NN SRMYVLE+TG
Sbjct: 148 PNNNSRMYVLENTG 161

[Close]

BLAST of Carg07777 vs. TAIR 10
Match: AT2G30470.1 (high-level expression of sugar-inducible gene 2 )

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-12
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 149 NLNLSTLSTPNKVLRILLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDV 208
           NLNL+ +         L +K L  SD G +GR+VLPK  AE   P +S  EG+ + I+DV
Sbjct: 286 NLNLNIVP--------LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDV 345

Query: 209 NSNKKWSMKYKYWANNRSRMYVLESTGLNP 239
              ++W+ +++YW NN SRMYVLE  G+ P
Sbjct: 346 R-GREWTFQFRYWPNNNSRMYVLE--GVTP 364

[Close]

BLAST of Carg07777 vs. TAIR 10
Match: AT4G32010.1 (HSI2-like 1 )

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 165 LLKKELKNSDVGSLGRIVLPKREAEENLPFLSDKEGMQILIRDVNSNKKWSMKYKYWANN 224
           L +K L  SD G +GR+VLPK  AE   P +S  EG+ + I+D+   K+W  ++++W NN
Sbjct: 285 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDI-KGKEWVFQFRFWPNN 344

Query: 225 RSRMYVLESTGLNP 239
            SRMYVLE  G+ P
Sbjct: 345 NSRMYVLE--GVTP 355

The following BLAST results are available for this feature:

BLAST of Carg07777 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026568.1	7.5e-129	100.00	B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma ...	[more]
XP_022926805.1	8.1e-123	98.30	B3 domain-containing transcription factor LEC2-like [Cucurbita moschata]	[more]
KAG6594597.1	3.1e-122	97.89	B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma ...	[more]
XP_023518478.1	1.4e-119	95.32	B3 domain-containing transcription factor LEC2-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003348.1	3.8e-112	92.44	B3 domain-containing transcription factor LEC2-like [Cucurbita maxima]	[more]

BLAST of Carg07777 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PFR7	3.7e-22	42.65	B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q01593	1.0e-19	55.13	B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q7XKC5	5.1e-19	49.47	B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica OX=399...	[more]
P37398	1.2e-17	57.14	B3 domain-containing protein VP1 OS=Oryza sativa subsp. japonica OX=39947 GN=VP1...	[more]
Q7XKC4	8.9e-16	35.46	Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japoni...	[more]

BLAST of Carg07777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM52	3.9e-123	98.30	B3 domain-containing transcription factor LEC2-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1KW90	1.8e-112	92.44	B3 domain-containing transcription factor LEC2-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0KND0	4.6e-55	54.44	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517930 PE=4 ...	[more]
A0A6J1IQY4	1.9e-53	56.60	B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1EJR4	2.8e-52	54.38	B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Carg07777 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28300.1	2.7e-23	42.65	AP2/B3-like transcriptional factor family protein	[more]
AT3G24650.1	7.3e-21	55.13	AP2/B3-like transcriptional factor family protein	[more]
AT3G26790.1	1.5e-18	58.11	AP2/B3-like transcriptional factor family protein	[more]
AT2G30470.1	6.2e-12	43.33	high-level expression of sugar-inducible gene 2	[more]
AT4G32010.1	5.2e-11	45.95	HSI2-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 168..233 e-value: 1.9E-9 score: 37.3
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 165..232 e-value: 6.63155E-13 score: 60.8045
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 155..238 e-value: 8.6E-26 score: 92.0
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 166..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..50
None	No IPR available	PANTHER	PTHR31140:SF74	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1	coord: 79..235
IPR044800	B3 domain-containing transcription factor LEC2-like	PANTHER	PTHR31140	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	coord: 79..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07777-RA	Carg07777-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity