Carg07686 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07686
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein DELETION OF SUV3 SUPPRESSOR 1(I)-like
LocationCarg_Chr13: 8454987 .. 8457799 (-)
RNA-Seq ExpressionCarg07686
SyntenyCarg07686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGAACGCAAGATCTCTGGGTCGTGACCTGATAATTAGGGCGAAAATTTCATATTTGGAAACAATAAAATTTTTCAGTTGGTTCATCTTGTTCACTCTCTCTCTCTCGAGTCTTCCCCTTGCTTTTCGTTTCTCTCATCTCCACGTCCTAATTGAACAAAGGTAATCTTCTGTACTGTTCATTTCTAAAATCTAAATCGATTTGCATTCTTGTAATTCTAGGAATCTTTGTTTAGATCTGTAATTTTCTTTGGAGTTCTCAGTAATTTGACTCGCACTCACATATTTCGATTCGGATGTACTGATTCGATGTGTTTGCTATTTCCATCTTTTTGTCTCATTTATGAACGAAGAAGTATTCTATTCACTATGCAATACTTCGTGATTTTTGTTCATCTTTGATTTTAATGTTGACTCTTTTCGAGGCATTTTGTTTCTCTTATGACGTTGATACATGTTTCTTGTGAGGTTCTGCAAAATATTTGACCCAACCTGACCCTCGCAGATTTTTTTTTTTTTTTTTTTTTTTGGTACTATTGGTTTCTTCTGTGATTGGCATCTTAGTTTGGAAAAGTTAGGGTTTCACTAGATTGTACTTTGTTATTTAATTCTAAATTCAATAATAAATTCCTCATTTATAATGAGGTATCTTATTACATTTCCGTCTCGCCGTAAATCAAATTAATCCTCGTGGGGAGCATAGTTTTGCTTCTGGTTTGTAATTTTTTTTTACTTATTAATGTGATTATTGCTGATTTTTGTTGAATAATACATCCGTAGGCAGTTCAAACTTTGTGATGGCAACTGAAACCAAAACGGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTCGAAGAGTTTGAGATTAATGAAGGTACAGCTTGAAATCCTCTCCTTATTTATGGCTGGCCGATGTGCAATTACTTGTTTGATGTTCCAGCCAAAAGAATGGGAATGCAATAAGGGTTTGCGTAGTCCTGTTACCGACTTGCCAATAACTGATAACTTCTATAGGAATAATAGCATTCTCTAATTTGGATCAGCACACCCTAAATATTTCTTGTTCACCTATAACCACTATTTTATATCATTTCCATCTGATACAATTAGAATGGTAATGAGCTGGAGTTGTAATACTATACAATTACACTAATAATAATGATCAATAAAAAGAACTTTTAGTAAGAGAGAAAAAAAGGTCAGAGTTACATGCCTTTTGGCTTTAGAGGAATATCCTTTCCATGTCTGAGGTTAACATTCTACTGTTAGGATTCGGGAAGTCCATGGGAAGCCTTTGTCTGCATTAAAATTTTTCTGGTATTTGGGATGATACACACAAATTGAGAAGTTTTTATTTATTACTGTGTGCTCAAGAATACTAGGAGTTTTAGTTGTATATTAGAAAATTGAAGGGATGATCTTGGTGGGATGGTTGGCAAAATCCTTTTGCAGTTCAACCATTTTGAATTTCTGTAAATCAATTGGTGGATGTGCATTGACCTTGATCTGCCTTCAAGGGAAAGTAGAAGTTTTTGTTAAGTAGGCTCCCACTTTTGCAGGTGGGAGTGAAGAAGTATGCTCTGCTGCTTCATTTGAATCCTCCCATGAGCAATGCAACAGTGCTTTGAGGAAGGAGATTAGAGTCCTGTGGTTTTCTGTTGATATGTTTACACTCTAGCTGATATCGTCTCTTCTGTCAGAATCTGAATTTTTGTATGTCTTGAGCTCTTGAAGTGAGTATTAGCACGCCAACATGAATGGATTATTTCCTTAGCATCTTTGCCACTTAAAGATGAAACTGTTAGAGAGAGACGGTGGGGGGCACATGTTTTCATTTATTGTTTCTGGCGGTTAGTTTCTGAGTGATCATAGATATGGGAGAACGCCATGACACTCTATGATATCTGTATAGTTGTTCTTTATGGGATTGATAGACATTTTTTTATGAATGATCATATGAACTGCAGAATGGGAAGTCAAAGAAGAAGGGAAGGAAATTACACAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAATGACGACTTCTCCTTGCAGCTTCGGAGAGAATTGGAGAGCAACACCGAGAAGAAATGAGAAGATTTTTTTGTTGTCTTGTATGTTTCTTATCTTCTAAGATCTTATGTTAACTAGGTCTTTTGACCCCAAGGTGGGATTACGACGTCTTCTATCCTTCTTGTAAATCATGGTATTATGAACATGCTTAGAAGCCTAAAACACTGTTACCTTTTCAGATCAGATAATTGGAAAATCGTCGAAACCTTTGGCACCGAAGAAAACAGTGTGTTCTTTTGTCGCTGTTGTCGTCATCGTCGTCACGGACCATGAATCCATCGAGATTATCAACATTGTGATGGAGTCTTTTCAAATAGATGTCCGAAATGTTGTTGGAATGTCAAAAATGGTTTGAAAGAGTTGGTAGTTGTTGGAATGTTGACAAATTGCCCGACTAGTCACTAGAGTAGGAGGAAGTTGGGTGATTACAAAAAAATGATATTCCTTCATATTTTTACCAAGTTGTGTAAATTTCAGTCTTTATTTGCATACCTTCATAGTATAAAAAAATTCTATCTTTCCCCACTTCGTCTTCTTCTTAGGCCCTCCTCTTTCCCTAATTCTGTACAGTAACCATTTCCAAGCCACTTACAGACGGCGGCGCTTCCTCTGAACTTCAACTTCCTCCCGGCCACCGCTCCCGGCGGCATAATACTTACCGGCTGTCACTCGTCAGCTGTAGAACACCCAGCCTCTCTCTCAATAAATTCAATTAATTTCAC

mRNA sequence

TTCGAACGCAAGATCTCTGGGTCGTGACCTGATAATTAGGGCGAAAATTTCATATTTGGAAACAATAAAATTTTTCAGTTGGTTCATCTTGTTCACTCTCTCTCTCTCGAGTCTTCCCCTTGCTTTTCGTTTCTCTCATCTCCACGTCCTAATTGAACAAAGGCAGTTCAAACTTTGTGATGGCAACTGAAACCAAAACGGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTCGAAGAGTTTGAGATTAATGAAGGTGGGAGTGAAGAAGTATGCTCTGCTGCTTCATTTGAATCCTCCCATGAGCAATGCAACAGTGCTTTGAGGAAGGAGATTAGAGTCCTGTGGTTTTCTGTTGATATGTTTACACTCTAGCTGATATCGTCTCTTCTGTCAGAATCTGAATTTTTAATGGGAAGTCAAAGAAGAAGGGAAGGAAATTACACAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAATGACGACTTCTCCTTGCAGCTTCGGAGAGAATTGGAGAGCAACACCGAGAAGAAATGAGAAGATTTTTTTGTTGTCTTGTATGTTTCTTATCTTCTAAGATCTTATGTTAACTAGGTCTTTTGACCCCAAGGTGGGATTACGACGTCTTCTATCCTTCTTGTAAATCATGGTATTATGAACATGCTTAGAAGCCTAAAACACTGTTACCTTTTCAGATCAGATAATTGGAAAATCGTCGAAACCTTTGGCACCGAAGAAAACAGTGTGTTCTTTTGTCGCTGTTGTCGTCATCGTCGTCACGGACCATGAATCCATCGAGATTATCAACATTGTGATGGAGTCTTTTCAAATAGATGTCCGAAATGTTGTTGGAATGTCAAAAATGGTTTGAAAGAGTTGGTAGTTGTTGGAATGTTGACAAATTGCCCGACTAGTCACTAGAGTAGGAGGAAGTTGGGTGATTACAAAAAAATGATATTCCTTCATATTTTTACCAAGTTGTGTAAATTTCAGTCTTTATTTGCATACCTTCATAGTATAAAAAAATTCTATCTTTCCCCACTTCGTCTTCTTCTTAGGCCCTCCTCTTTCCCTAATTCTGTACAGTAACCATTTCCAAGCCACTTACAGACGGCGGCGCTTCCTCTGAACTTCAACTTCCTCCCGGCCACCGCTCCCGGCGGCATAATACTTACCGGCTGTCACTCGTCAGCTGTAGAACACCCAGCCTCTCTCTCAATAAATTCAATTAATTTCAC

Coding sequence (CDS)

ATGGCAACTGAAACCAAAACGGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTCGAAGAGTTTGAGATTAATGAAGGTGGGAGTGAAGAAGTATGCTCTGCTGCTTCATTTGAATCCTCCCATGAGCAATGCAACAGTGCTTTGAGGAAGGAGATTAGAGTCCTGTGGTTTTCTGTTGATATGTTTACACTCTAG

Protein sequence

MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEEVCSAASFESSHEQCNSALRKEIRVLWFSVDMFTL
Homology
[Close]
BLAST of Carg07686 vs. NCBI nr
Match: KAG7019825.1 (hypothetical protein SDJN02_18789 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEEVCSAASFESSHEQCNSALRKEIRVL 60
          MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEEVCSAASFESSHEQCNSALRKEIRVL
Sbjct: 1  MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEEVCSAASFESSHEQCNSALRKEIRVL 60

Query: 61 WFSVDMFTL 70
          WFSVDMFTL
Sbjct: 61 WFSVDMFTL 69

[Close]
BLAST of Carg07686 vs. NCBI nr
Match: XP_022923645.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >XP_022923646.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >XP_023000666.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima] >XP_023000667.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima] >XP_023519106.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita pepo subsp. pepo] >XP_023519107.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATETKTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 30

[Close]
BLAST of Carg07686 vs. NCBI nr
Match: KAE9587396.1 (hypothetical protein Lalb_Chr23g0273191 [Lupinus albus])

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEEVC 38
          MATETK ATE+VKIDLFEDDDEFEEFEINEG     C
Sbjct: 1  MATETKAATEDVKIDLFEDDDEFEEFEINEGFRWSCC 37

[Close]
BLAST of Carg07686 vs. NCBI nr
Match: KAG6573049.1 (Protein DELETION OF SUV3 SUPPRESSOR 1(I), partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-05
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATE+KTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 35 MATESKTATEEVKIDLFEDDDEFEEFEINE 64

[Close]
BLAST of Carg07686 vs. NCBI nr
Match: XP_022954951.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >KAG7012237.1 Protein DELETION OF SUV3 SUPPRESSOR 1(I), partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-05
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATE+KTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINE 30

[Close]
BLAST of Carg07686 vs. ExPASy Swiss-Prot
Match: Q9FL96 (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEE 36
          MA E K A E VK+DLFEDDDEFEEFEINE   E+
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEK 35

[Close]
BLAST of Carg07686 vs. ExPASy TrEMBL
Match: A0A6J1KGG4 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita maxima OX=3661 GN=LOC111495037 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATETKTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 30

[Close]
BLAST of Carg07686 vs. ExPASy TrEMBL
Match: A0A6J1ECF8 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita moschata OX=3662 GN=LOC111431292 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATETKTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 30

[Close]
BLAST of Carg07686 vs. ExPASy TrEMBL
Match: A0A6A4MWL4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr23g0273191 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEEVC 38
          MATETK ATE+VKIDLFEDDDEFEEFEINEG     C
Sbjct: 1  MATETKAATEDVKIDLFEDDDEFEEFEINEGFRWSCC 37

[Close]
BLAST of Carg07686 vs. ExPASy TrEMBL
Match: A0A5A7UJ57 (Putative 26S proteasome complex subunit sem1-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00610 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATE+KTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINE 30

[Close]
BLAST of Carg07686 vs. ExPASy TrEMBL
Match: A0A0A0LU33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINE 31
          MATE+KTATEEVKIDLFEDDDEFEEFEINE
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINE 30

[Close]
BLAST of Carg07686 vs. TAIR 10
Match: AT5G45010.1 (DSS1 homolog on chromosome V )

HSP 1 Score: 46.6 bits (109), Expect = 9.4e-06
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 1  MATETKTATEEVKIDLFEDDDEFEEFEINEGGSEE 36
          MA E K A E VK+DLFEDDDEFEEFEINE   E+
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEK 35

[Close]
BLAST of Carg07686 vs. TAIR 10
Match: AT1G64750.3 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1  MATETKTATEE-VKIDLFEDDDEFEEFEINEGGSEEVCSA 40
          MA E K AT E VK+DLFEDDDEFEEFEINE  S ++ S+
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSS 40

[Close]
BLAST of Carg07686 vs. TAIR 10
Match: AT1G64750.1 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 43.5 bits (101), Expect = 8.0e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MATETKTATEE-VKIDLFEDDDEFEEFEINEGGSEE 36
          MA E K AT E VK+DLFEDDDEFEEFEINE   E+
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEK 36

[Close]
BLAST of Carg07686 vs. TAIR 10
Match: AT1G64750.2 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 43.5 bits (101), Expect = 8.0e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MATETKTATEE-VKIDLFEDDDEFEEFEINEGGSEE 36
          MA E K AT E VK+DLFEDDDEFEEFEINE   E+
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEK 36

The following BLAST results are available for this feature:
BLAST of Carg07686 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019825.12.2e-28100.00hypothetical protein SDJN02_18789 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022923645.12.6e-05100.00protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >XP_022923646... [more]
KAE9587396.15.7e-0581.08hypothetical protein Lalb_Chr23g0273191 [Lupinus albus][more]
KAG6573049.17.5e-0596.67Protein DELETION OF SUV3 SUPPRESSOR 1(I), partial [Cucurbita argyrosperma subsp.... [more]
XP_022954951.17.5e-0596.67protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >KAG7012237.1... [more]
BLAST of Carg07686 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FL961.3e-0471.43Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) ... [more]
BLAST of Carg07686 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KGG41.2e-05100.00protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1ECF81.2e-05100.00protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6A4MWL42.8e-0581.08Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr23g0273191 PE=4 SV=1[more]
A0A5A7UJ573.6e-0596.67Putative 26S proteasome complex subunit sem1-1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0LU333.6e-0596.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046000 PE=4 SV=1[more]
BLAST of Carg07686 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G45010.19.4e-0671.43DSS1 homolog on chromosome V [more]
AT1G64750.31.2e-0567.50deletion of SUV3 suppressor 1(I) [more]
AT1G64750.18.0e-0572.22deletion of SUV3 suppressor 1(I) [more]
AT1G64750.28.0e-0572.22deletion of SUV3 suppressor 1(I) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07686-RACarg07686-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0043248 proteasome assembly
cellular_component GO:0008541 proteasome regulatory particle, lid subcomplex