Carg07653 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07653
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 8314932 .. 8315623 (-)
RNA-Seq ExpressionCarg07653
SyntenyCarg07653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGACCATGATCATCTCGTGCCCCAATCACAGCCTCATGTCTGGGTTCTCCGAGAGGGATTTTGGGTACTTTACGCTGTGGACCCTACATTTTCATTTTCAGCATAATAATGGGTCACCCAATTAGTTATCCTTTCTCCTCAGAGGAGGCTCTTTGAGAACTGGCGAGAAAGAGGCTTCAATGAAGGGTTTAGGGTTCAATGAATGCTCTATGGTCCGCCATTAACCAAAACCGATTTGAAGCGTCACCTTCACTGAAGAAACCAAACCACGAGAAGAAGTCGAAAAGTTTCTTGGCCGATAAGCCAAACACGCCCTATTAAATCAAGAGCACAAACAAATTTTATATTTCTCTGTTCCCATCTCTTGACCCACCCCTCTGCGACGCTCGTTCTGCTAGGGTTCTGAAGCCATGGCGTATACTTATAAAAGGTTGGAATTCTCGTCTTGATGGAATCAGCATGCTCATGACTTGGTTAAATATGGAGAAACGGTAAGGCGCTTCACTGCTAGAGTCACTCGATACCATACACTGGAAGTTCTACCCCTTCGATTTCACCCTTGGTTTTGAAATCTCTGCCAGAGCCCTTACCTGAGTTTTGTTCGAAGATCCTCCTTGACATCGCTTCAATCTGCAGTTATCTTTGTGCCTTCCGAGCTTGTTCAGAGCTTTATTCGGTTGGGAAACAC

mRNA sequence

ATGGGGACCATGATCATCTCGTGCCCCAATCACAGCCTCATGTCTGGGTTCTCCGAGAGGGATTTTGGTTCTACCCCTTCGATTTCACCCTTGGTTTTGAAATCTCTGCCAGAGCCCTTACCTGAGTTTTGTTCGAAGATCCTCCTTGACATCGCTTCAATCTGCAGTTATCTTTGTGCCTTCCGAGCTTGTTCAGAGCTTTATTCGGTTGGGAAACAC

Coding sequence (CDS)

ATGGGGACCATGATCATCTCGTGCCCCAATCACAGCCTCATGTCTGGGTTCTCCGAGAGGGATTTTGGTTCTACCCCTTCGATTTCACCCTTGGTTTTGAAATCTCTGCCAGAGCCCTTACCTGAGTTTTGTTCGAAGATCCTCCTTGACATCGCTTCAATCTGCAGTTATCTTTGTGCCTTCCGAGCTTGTTCAGAGCTTTATTCGGTTGGGAAACAC

Protein sequence

MGTMIISCPNHSLMSGFSERDFGSTPSISPLVLKSLPEPLPEFCSKILLDIASICSYLCAFRACSELYSVGKH
Homology
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BLAST of Carg07653 vs. NCBI nr
Match: KAG7019793.1 (hypothetical protein SDJN02_18756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 1.8e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MGTMIISCPNHSLMSGFSERDFGSTPSISPLVLKSLPEPLPEFCSKILLDIASICSYLCA 60
          MGTMIISCPNHSLMSGFSERDFGSTPSISPLVLKSLPEPLPEFCSKILLDIASICSYLCA
Sbjct: 1  MGTMIISCPNHSLMSGFSERDFGSTPSISPLVLKSLPEPLPEFCSKILLDIASICSYLCA 60

Query: 61 FRACSELYSVGKH 74
          FRACSELYSVGKH
Sbjct: 61 FRACSELYSVGKH 73

The following BLAST results are available for this feature:
BLAST of Carg07653 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019793.11.8e-33100.00hypothetical protein SDJN02_18756, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg07653 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07653 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07653 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07653-RACarg07653-RAmRNA