Carg07617 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07617
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBidirectional sugar transporter SWEET
LocationCarg_Chr13: 8151976 .. 8153688 (-)
RNA-Seq ExpressionCarg07617
SyntenyCarg07617
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTATCATTCAATATGCATAACCCTGGAGCCTTTGCATTCGGCCTTCTCGGTACCTATTCTTTCACATCCCCTCTATCCTCAACCACAATTCAGCAACATAAATAACCCAACTCTCTTCTAATTTTGTAGGTAACCTTATCTCCTTCATCGTGTTCTTGGCTCCTCTGTAAGTATCCACTTCACTTCATTTTTTCAGTGTATTTTGAGCTACAAAATTAAAGGGTTTTGGTATGTGGGTGTGGCAGACCAACGTTTATAAGAATTTGTAAGAAGAAATCAACAGAAGGGTTCCAATCAGTTCCATACGTGGTGGCACTTTTTAGCGCCATGCTTTGGTTATACTACGCCTCATTCAAGCCTGATGAAACCCTTCTCATTACAATCAATTCAGTTGGGTGTGTCATTGAGATTGTTTACATAGCCATCTTCGTTGCTTTTGCTCCTAAGCAAATTCGGGTATTGTTCTTGGATTAGTTCTTAAAGGTTTCAACTTTTTTTATGGAATTTAACTTTTTGATCCAAATTTGTGCAGATTTCCACGTTGAGATTTGTTCTTCTGCTGAACTTTGGTGGGTTTTGTATAATTTTACTTGTGACTCACTTCTTAGTGCATGGCTCAAACAGAGTGAAGGTTCTTGGATGGATTTGTGTGGCCTTTTCTATCAGTGTCTTTGCAGCTCCATTAAGCATAATGGTAAGTATCTTCGTTACTATGTTAATTTGTGTTGTGTGGCGTATGCTACCGCCTTCAATGCTCTGATACCACTTGTTGTGTACCGAAATGCTACAACTTCAATGTTTTTTTATACCAATTGTTGTACTTATAGCGGAAGCAATATCGAATTTACTCACACACCCACGAATGAAATTTAAACAAAGAGACAGATTTAAAGAATTTTTCTCTTCGAACTACGTAAATCTTTGTCTCTTTGTTTAGATTTCGTTCATGGGTGTGTGAGTATATTTGATCTTGCTTCCGCTATGTTGAGGATTATTGGGAGTGAGTCCCACGTTGGCTAATTTAGAAATAATCATGGGTTTATAAGTGAAGTACTACATCTCCATTGATACTATGCCTCTTGGGGAAGCCCAAAGTAAAGTCATGAGAGCTTATTCTCAAATTGGACAATATCATACGATCGTAGAGGGTCATGATTCCTAACACGTTATTAGTATCAGAGCATAGAAGGTTGTAGCATTCAACCATTTCTTTGAAGAACGGTATGTTAATTTCTCGATTTTTCTTTACGAAAGAGATTGGTGATTCGCACGAAGAGCGTGGAGTTCATGCCGTTTTCTTTATCGTTCTTCCTCACACTGAGTGCCATTACATGGCTTCTTTATGGCGTATTGCTCAAAGACATCTATATTGCGGTATTTTTACTATTCACCCTATAAATTTTAGACCAATTATTAGTATAATTTGATGATTGAATTTCGTGTTTTGATTATGGTAAGCTTCCAAATGTGCCGGGGTTTATATTCGGGATAGCTCAAATGATTCTTTATATAATCTACAACAAACAAGAAATAGCAGAGGAAATGACTGCCGCCGCCGCCGCCGCCAACGCCGCCGCCACAAACTCTGACAAAGAAAAACAAGATTCTGTTGAAGCGGTTGAGGTAATCATAACCGAAGTCAACAACGAGGACAAAGACAAGAACTTGGAAGTCAACGGCCTTATTAGAAACCCTAATCATGTTTAA

mRNA sequence

ATGGCTTTATCATTCAATATGCATAACCCTGGAGCCTTTGCATTCGGCCTTCTCGTGCATGGCTCAAACAGAGTGAAGCTTCCAAATGTGCCGGGGTTTATATTCGGGATAGCTCAAATGATTCTTTATATAATCTACAACAAACAAGAAATAGCAGAGGAAATGACTGCCGCCGCCGCCGCCGCCAACGCCGCCGCCACAAACTCTGACAAAGAAAAACAAGATTCTGTTGAAGCGGTTGAGGTAATCATAACCGAAGTCAACAACGAGGACAAAGACAAGAACTTGGAAGTCAACGGCCTTATTAGAAACCCTAATCATGTTTAA

Coding sequence (CDS)

ATGGCTTTATCATTCAATATGCATAACCCTGGAGCCTTTGCATTCGGCCTTCTCGTGCATGGCTCAAACAGAGTGAAGCTTCCAAATGTGCCGGGGTTTATATTCGGGATAGCTCAAATGATTCTTTATATAATCTACAACAAACAAGAAATAGCAGAGGAAATGACTGCCGCCGCCGCCGCCGCCAACGCCGCCGCCACAAACTCTGACAAAGAAAAACAAGATTCTGTTGAAGCGGTTGAGGTAATCATAACCGAAGTCAACAACGAGGACAAAGACAAGAACTTGGAAGTCAACGGCCTTATTAGAAACCCTAATCATGTTTAA

Protein sequence

MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVIITEVNNEDKDKNLEVNGLIRNPNHV
Homology
[Close]
BLAST of Carg07617 vs. NCBI nr
Match: KAG7019757.1 (hypothetical protein SDJN02_18720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.8 bits (525), Expect = 9.1e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAA 60
           MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAA
Sbjct: 1   MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAA 60

Query: 61  AANAAATNSDKEKQDSVEAVEVIITEVNNEDKDKNLEVNGLIRNPNHV 109
           AANAAATNSDKEKQDSVEAVEVIITEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 61  AANAAATNSDKEKQDSVEAVEVIITEVNNEDKDKNLEVNGLIRNPNHV 108

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_022923938.1 (bidirectional sugar transporter SWEET12-like isoform X2 [Cucurbita moschata] >KAG6584167.1 Bidirectional sugar transporter SWEET12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 277

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_022923939.1 (bidirectional sugar transporter SWEET12-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII
Sbjct: 193 IALPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 252

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 253 TEVNNEDKDKNLEVNGLIRNPNHV 276

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_023520033.1 (bidirectional sugar transporter SWEET12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-30
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNK EIAEEMTAAAAA  AAATNSDKEKQDSVE +EVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKHEIAEEMTAAAAA--AAATNSDKEKQDSVETIEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 275

[Close]
BLAST of Carg07617 vs. NCBI nr
Match: XP_023000940.1 (bidirectional sugar transporter SWEET12-like [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNK EIA EMTAAAAA  AAATNSDKEKQDSVEA+EVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKHEIAGEMTAAAAA--AAATNSDKEKQDSVEAIEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 275

[Close]
BLAST of Carg07617 vs. ExPASy TrEMBL
Match: A0A6J1EAX9 (Bidirectional sugar transporter SWEET OS=Cucurbita moschata OX=3662 GN=LOC111431505 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 277

[Close]
BLAST of Carg07617 vs. ExPASy TrEMBL
Match: A0A6J1E7R7 (Bidirectional sugar transporter SWEET OS=Cucurbita moschata OX=3662 GN=LOC111431505 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII
Sbjct: 193 IALPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 252

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 253 TEVNNEDKDKNLEVNGLIRNPNHV 276

[Close]
BLAST of Carg07617 vs. ExPASy TrEMBL
Match: A0A6J1KJP5 (Bidirectional sugar transporter SWEET OS=Cucurbita maxima OX=3661 GN=LOC111495227 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIAEEMTAAAAAANAAATNSDKEKQDSVEAVEVII 84
           + LPNVPGFIFGIAQMILYIIYNK EIA EMTAAAAA  AAATNSDKEKQDSVEA+EVII
Sbjct: 194 IALPNVPGFIFGIAQMILYIIYNKHEIAGEMTAAAAA--AAATNSDKEKQDSVEAIEVII 253

Query: 85  TEVNNEDKDKNLEVNGLIRNPNHV 109
           TEVNNEDKDKNLEVNGLIRNPNHV
Sbjct: 254 TEVNNEDKDKNLEVNGLIRNPNHV 275

[Close]
BLAST of Carg07617 vs. ExPASy TrEMBL
Match: A0A6J1KLD4 (Bidirectional sugar transporter SWEET OS=Cucurbita maxima OX=3661 GN=LOC111495226 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.0e-07
Identity = 53/107 (49.53%), Postives = 61/107 (57.01%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIA--------EEMTAAAAAANAAATNSDKEKQD- 84
           V LPNV GFIFG+AQMILY+IY K E+A        E  T     A AAA  +DKEK+D 
Sbjct: 193 VALPNVLGFIFGVAQMILYLIYKKHEMAMAKEMKLPEHTTEIIMIATAAAA-ADKEKEDS 252

Query: 85  ----SVEAVEVIIT---EVNN----------EDKDKNLEVNGLIRNP 106
               SV A+EVIIT   E +N          +DKDKNLEVN  I  P
Sbjct: 253 SLPPSVGAIEVIITNGIEHDNKMELDLKDKVKDKDKNLEVNDQITVP 298

[Close]
BLAST of Carg07617 vs. ExPASy TrEMBL
Match: A0A6J1E7H2 (Bidirectional sugar transporter SWEET OS=Cucurbita moschata OX=3662 GN=LOC111431505 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 50/110 (45.45%), Postives = 58/110 (52.73%), Query Frame = 0 

Query: 25  VKLPNVPGFIFGIAQMILYIIYNKQEIA------------EEMTAAAAAANAAATNSDKE 84
           V LPNV GFIFG+AQMILY+IY KQEIA            E +   AAAA AA    D  
Sbjct: 193 VALPNVLGFIFGVAQMILYLIYKKQEIAMAKEMKLPEHTTEIIMITAAAAAAAEEKEDSS 252

Query: 85  KQDSVEAVEVIIT---------------EVNNE--DKDKNLEVNGLIRNP 106
              S+ A+EVIIT               +V ++  DKDKNLEVN  I  P
Sbjct: 253 LPPSIGAIEVIITNGIQHDNKMELDLKDKVKDQVKDKDKNLEVNHQITVP 302

[Close]
BLAST of Carg07617 vs. TAIR 10
Match: AT5G50790.1 (Nodulin MtN3 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 9.5e-05
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 13  FAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIYNK 49
           F +GLL+   N + LPNV GFIFG+ QMIL++IY K
Sbjct: 180 FFYGLLLKDMN-IALPNVLGFIFGVLQMILFLIYKK 214

[Close]
BLAST of Carg07617 vs. TAIR 10
Match: AT2G39060.1 (Nodulin MtN3 family protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-04
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 1   MALSFNMHNPGAFAFGLLVHGSNRVKLPNVPGFIFGIAQMILYIIY 47
           ++LS  ++    F +GLL+     + +PN+ GF+FG+AQMILY++Y
Sbjct: 168 LSLSLTLNAVMWFFYGLLIK-DKFIAMPNILGFLFGVAQMILYMMY 212

The following BLAST results are available for this feature:
BLAST of Carg07617 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019757.19.1e-50100.00hypothetical protein SDJN02_18720, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022923938.14.1e-3497.62bidirectional sugar transporter SWEET12-like isoform X2 [Cucurbita moschata] >KA... [more]
XP_022923939.14.1e-3497.62bidirectional sugar transporter SWEET12-like isoform X3 [Cucurbita moschata][more]
XP_023520033.12.8e-3091.67bidirectional sugar transporter SWEET12-like [Cucurbita pepo subsp. pepo][more]
XP_023000940.16.2e-3091.67bidirectional sugar transporter SWEET12-like [Cucurbita maxima][more]
BLAST of Carg07617 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07617 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EAX92.0e-3497.62Bidirectional sugar transporter SWEET OS=Cucurbita moschata OX=3662 GN=LOC111431... [more]
A0A6J1E7R72.0e-3497.62Bidirectional sugar transporter SWEET OS=Cucurbita moschata OX=3662 GN=LOC111431... [more]
A0A6J1KJP53.0e-3091.67Bidirectional sugar transporter SWEET OS=Cucurbita maxima OX=3661 GN=LOC11149522... [more]
A0A6J1KLD46.0e-0749.53Bidirectional sugar transporter SWEET OS=Cucurbita maxima OX=3661 GN=LOC11149522... [more]
A0A6J1E7H21.3e-0645.45Bidirectional sugar transporter SWEET OS=Cucurbita moschata OX=3662 GN=LOC111431... [more]
BLAST of Carg07617 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G50790.19.5e-0558.33Nodulin MtN3 family protein [more]
AT2G39060.16.2e-0441.30Nodulin MtN3 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07617-RACarg07617-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane