Carg07274 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07274
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 8708908 .. 8709957 (+)
RNA-Seq ExpressionCarg07274
SyntenyCarg07274
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAAGAGTTTCCATCCGCCCCCTTCTCTCCATCTCCCTCCTCCGCCATTTTCCCCACTCTCCGCTTACACCAATCTAAATTCATTTTCGCTTCTTCATTTCTTCTTCTTCTTCCGTCCGGGAGCTCGCCGGAGAATCGCCTCTTTTGCCTCCAGGTTGCAACTCTCTCTGTACTTCATTTTTAGTTTCTTTTGCATTACCAAACTTGTCGCCGAAAATTTGATGCTAGATGTCGCTGTTTTTGCCCTAGACAGTTGCCATTCTTCTTGTTTCTACTTGCATTTGGTTTTTCTTTAATGTTTTTTGTCTTTTTTTTTTTTTTGCTTTCTGCTACTGTTTTGCTGCTTGTATTTGATTAATCTGGTGCGGTGTATGGTTTATTTTTGTACTTGCTTCTAAACCTTGAGTACTTCACTTCTTGTGGCTTTCGAAACCTTTAGTGTTGAGTGAATGCGCGAGGATGAGTGGACGGAGATGAATGTTACTTCCTTGTGGCTTTGAGTTTAATGCTTTTGAGTAAGAGTAAAGGCTACATAACGTTCACGTGATTTGATGCCGTTTGTTTTTGTGTTTGAATTCAAAACCATGGTTCTTTACGCGCACTGTCTCCGTCTTTGTCAGTGTGAGTTGAATTTTTTGATTCGATGGCGCGGGATTTGCTCCGTAACCCTAGCGTGCTTGTTTCCTAGTTAATTTGCACTTTGACTCTTCCTTTCTAGTCTATGTCTCTAATTTATCAACCATTTGACTATTGGGATTTGCATAATTTTATTGCGAGGCTTTTTAATTTTTTACTTTCGAAAACTTTGAATCATGTCATTCACATTGTGGGTGGCAAACGACGCGAGTCGTATCTTATTTTCTTATACCACAAAAAGTAATAAGCGTTTCAGTTGGAAATTTATTAATATTTATAACTCAGAGTATAAGCGATGGTGATTCTATGCATGTCTAATTTTAATTTTTTGATGAACGTCAATCAGTAGCCTTGGCCTGGGTGCTCCCCTCTTTCGTTTATCAAAGGACAACAGTTTGACGGAATTTAA

mRNA sequence

ATGGTTGAAGAGTTTCCATCCGCCCCCTTCTCTCCATCTCCCTCCTCCGCCATTTTCCCCACTCTCCGCTTACACCAATCTAAATTCATTTTCGCTTCTTCATTTCTTCTTCTTCTTCCGTCCGGGAGCTCGCCGGAGAATCGCCTCTTTTGCCTCCAGCCTTGGCCTGGGTGCTCCCCTCTTTCGTTTATCAAAGGACAACAGTTTGACGGAATTTAA

Coding sequence (CDS)

ATGGTTGAAGAGTTTCCATCCGCCCCCTTCTCTCCATCTCCCTCCTCCGCCATTTTCCCCACTCTCCGCTTACACCAATCTAAATTCATTTTCGCTTCTTCATTTCTTCTTCTTCTTCCGTCCGGGAGCTCGCCGGAGAATCGCCTCTTTTGCCTCCAGCCTTGGCCTGGGTGCTCCCCTCTTTCGTTTATCAAAGGACAACAGTTTGACGGAATTTAA

Protein sequence

MVEEFPSAPFSPSPSSAIFPTLRLHQSKFIFASSFLLLLPSGSSPENRLFCLQPWPGCSPLSFIKGQQFDGI
Homology
[Close]
BLAST of Carg07274 vs. NCBI nr
Match: KAG7014464.1 (hypothetical protein SDJN02_24642, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVEEFPSAPFSPSPSSAIFPTLRLHQSKFIFASSFLLLLPSGSSPENRLFCLQPWPGCSP 60
          MVEEFPSAPFSPSPSSAIFPTLRLHQSKFIFASSFLLLLPSGSSPENRLFCLQPWPGCSP
Sbjct: 1  MVEEFPSAPFSPSPSSAIFPTLRLHQSKFIFASSFLLLLPSGSSPENRLFCLQPWPGCSP 60

Query: 61 LSFIKGQQFDGI 73
          LSFIKGQQFDGI
Sbjct: 61 LSFIKGQQFDGI 72

The following BLAST results are available for this feature:
BLAST of Carg07274 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014464.13.0e-33100.00hypothetical protein SDJN02_24642, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg07274 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07274 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07274 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07274-RACarg07274-RAmRNA