Carg07236 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAGATTCAAGATCCTTATATTTGCTGTAACTTTGTTCTTGGCTCTGATTCCTGACACAGAGGCTCAATGGCAGCCACCGAAAGTTGCTCCTCGGCCACCCTGCCCCTCCCAGATCGCGCTAGCAAACCTTGCTTGCGCAATGCTGCCTTACTCCACCATGGCCCTGTCACCTCCATCACTGTCACTCTCTGATAACCATGAAAGCCACGGCCTTCCGCCAAACCACAAACACTTGCGCACGCACTGGCACGGACACCAGCACCAGATATCCCTATCGCCAATGGAGGAGAATTGTTGTAAGTGGGTGCAGCAGTTGGACAGTCAATGTTTATGCAGGCTGTTGTCTCGGTTGCCTGCATTCTTAGAGAGGCCTCAACATAAAATCTCTTTTTCTGTTGGCGGTTCATGCAATGCTACATTCTCATGCGGAGGAGGAACCATAATTTAAGAAAAAAATTTCGGGTTATGCTCGAGTCATAGTGTGATTCAGTCCCTCATCTTTCTCAGTGTTGGATTTTCATGTCTGTGCTGTGTTGATGTTATATGATTCACTAGTTCTGTTGTTAAGAAATACAAATGTCACTTAAAACAGTTTCTAAATGGTGTTCGTATAGGTTCCAAAGTTAGGGGGTTATTAGGTTCAAATACAACTAAAAATGCACCAAAGATGTCAAGGACATAATAATATTTTAGTTTTAGGGCTCATTACTCATATACTCTGATATGATATCTTGGAAAATGCTACAAATTTCGTTGCCAATGTTAGGAGTATTTGCTTGACTATCATATGATATGATATGAGAATGTTGTCAACAATGTATCTGCCTACCAAAACTAGTGGCACCATTTTTTTTACAGTTTGTGGACGGTAGATTTTAGACCTATAATAGCATGATTATCTTGCCTCGGATTTTTTATATCGCTCTACTTCCTTTGTATGAATAATAGGACAACTACCTAACACTTTGTTTATTTAGTTGTGGAAGTTACTTATAAGGTATTAAATCTATTATTATCATGAGATAATTGTCTTGCCATCCAACATATTTTATCCATATCTTCTATCCATATCTATTCTAACAACTTAAGCTCACCACTAGCAGATATTGTCCCTTTTAGGCTTTCTCTTTTGGTTTTCTCTAGGATTGTGGGATCTCACATTGGTGGGAGAGGGGAACAAAACATTCTTTATAAAAGTGTAGAAAACTCTCCCTAGCAGCGTTTTAAAAATCTTGAGGGAAAGCATGGAAAAGAAAACCCAAAAAGAACAATATCTGCTAACGATGAGCTTAAGCTATTACAAATGGGATCAAAACCACACTGAATGGTGTGCCAGCGAGGACACTGAGCCTGGAAAGGGGATGGACATAGGACGGTGTACTAGCGAGGACACTAGGCTCCGAGGGAGGTCGATTGTGAGATCCTACATCTATTGGAGAGAGGAACGAAACATCCTTTATAATGGTGTGGAAACCTCTCCCTAGTCGGCGTATTTTAAAAATTTTGAGGGGGAAAGCATAAGAAAAACAATATCGGTGGTCTTTACATCCATTTGCTTGGATTTGAGGTCATAATGCCTAGTAGTGCTATGATTATCCTATAATGACTTTATGAAGGCATGCTTTGTTTCTTTTCTTTTGACTTTATTAATTCAATGCTCTCAATTACAACGATCACTTACATTCCAAGAAGTTTCTTTTTATAGGTAACTCAACGACAAGATCAAGTTCATTGAGGTCATTTCACCTAATTCGTTTATCAACTTTAGAATTTTGCCTTGAATGGTGGAAGCTGATAAGATCACAAGACTAA ATGGAGAGATTCAAGATCCTTATATTTGCTGTAACTTTGTTCTTGGCTCTGATTCCTGACACAGAGGCTCAATGGCAGCCACCGAAAGTTGCTCCTCGGCCACCCTGCCCCTCCCAGATCGCGCTAGCAAACCTTGCTTGCGCAATGCTGCCTTACTCCACCATGGCCCTGTCACCTCCATCACTGTCACTCTCTGATAACCATGAAAGCCACGGCCTTCCGCCAAACCACAAACACTTGCGCACGCACTGGCACGGACACCAGCACCAGATATCCCTATCGCCAATGGAGGAGAATTGTTGTAAGTGGGTGCAGCAGTTGGACAGTCAATGTTTATGCAGGCTGTTGTCTCGGTTGCCTGCATTCTTAGAGAGGCCTCAACATAAAATCTCTTTTTCTGTTGGCGGTAACTCAACGACAAGATCAAGTTCATTGAGGTCATTTCACCTAATTCGTTTATCAACTTTAGAATTTTGCCTTGAATGGTGGAAGCTGATAAGATCACAAGACTAA ATGGAGAGATTCAAGATCCTTATATTTGCTGTAACTTTGTTCTTGGCTCTGATTCCTGACACAGAGGCTCAATGGCAGCCACCGAAAGTTGCTCCTCGGCCACCCTGCCCCTCCCAGATCGCGCTAGCAAACCTTGCTTGCGCAATGCTGCCTTACTCCACCATGGCCCTGTCACCTCCATCACTGTCACTCTCTGATAACCATGAAAGCCACGGCCTTCCGCCAAACCACAAACACTTGCGCACGCACTGGCACGGACACCAGCACCAGATATCCCTATCGCCAATGGAGGAGAATTGTTGTAAGTGGGTGCAGCAGTTGGACAGTCAATGTTTATGCAGGCTGTTGTCTCGGTTGCCTGCATTCTTAGAGAGGCCTCAACATAAAATCTCTTTTTCTGTTGGCGGTAACTCAACGACAAGATCAAGTTCATTGAGGTCATTTCACCTAATTCGTTTATCAACTTTAGAATTTTGCCTTGAATGGTGGAAGCTGATAAGATCACAAGACTAA MERFKILIFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPPSLSLSDNHESHGLPPNHKHLRTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRLLSRLPAFLERPQHKISFSVGGNSTTRSSSLRSFHLIRLSTLEFCLEWWKLIRSQD Homology
BLAST of Carg07236 vs. NCBI nr
Match: KAG7014427.1 (hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 353.2 bits (905), Expect = 1.2e-93 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Carg07236 vs. NCBI nr
Match: XP_023548911.1 (uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 274.6 bits (701), Expect = 5.6e-70 Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 0
BLAST of Carg07236 vs. NCBI nr
Match: XP_038899044.1 (uncharacterized protein LOC120086453 [Benincasa hispida]) HSP 1 Score: 203.8 bits (517), Expect = 1.2e-48 Identity = 106/142 (74.65%), Postives = 114/142 (80.28%), Query Frame = 0
BLAST of Carg07236 vs. NCBI nr
Match: KAG6575895.1 (hypothetical protein SDJN03_26534, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 188.0 bits (476), Expect = 6.9e-44 Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Carg07236 vs. NCBI nr
Match: XP_031744964.1 (uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical protein Csa_016586 [Cucumis sativus]) HSP 1 Score: 169.9 bits (429), Expect = 1.9e-38 Identity = 86/138 (62.32%), Postives = 103/138 (74.64%), Query Frame = 0
BLAST of Carg07236 vs. ExPASy TrEMBL
Match: A0A0A0KAN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39 Identity = 86/138 (62.32%), Postives = 103/138 (74.64%), Query Frame = 0
BLAST of Carg07236 vs. ExPASy TrEMBL
Match: A0A5A7UTY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00120 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32 Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = 0
BLAST of Carg07236 vs. ExPASy TrEMBL
Match: A0A0B2QE80 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007235 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23 Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 0
BLAST of Carg07236 vs. ExPASy TrEMBL
Match: A0A6P4AZX7 (uncharacterized protein DDB_G0272724 OS=Ziziphus jujuba OX=326968 GN=LOC107426015 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21 Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 0
BLAST of Carg07236 vs. ExPASy TrEMBL
Match: A0A4D6MCY0 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2365 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21 Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 0
BLAST of Carg07236 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 52.8 bits (125), Expect = 3.2e-07 Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 0
HSP 2 Score: 43.9 bits (102), Expect = 1.5e-04 Identity = 34/87 (39.08%), Postives = 41/87 (47.13%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|