Carg07217 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07217
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Histone H2A
Location	Carg_Chr17: 8360481 .. 8362422 (-)
RNA-Seq Expression	Carg07217
Synteny	Carg07217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCACCGATGTTCCGACTAAGGGCGGCAGAGGCAAGAAATCTGCCGCCAAGTCAGTCTCCAGGTCTCACAAGGCTGGTCTTCAATTCCCCGTGGGTCGTATTGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGCGTAGGTTCTGGATCACCGGTTTACCTCTCCGCCGTCCTCGAATACCTCGCTGCCGAGGTTTGTAAGGCTAATTTCGTTTACAGTTTAATTCTTCGATTTTTAGTGTTTTGTTTCAAGAATTTTGCTTTTCGTTTAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCGAGGCATATTCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCTAGTGGAGGAGTGATGCCGAAGATTCCTCAGTCTCTTTTGCCGAAGAAGGCTGGGAATGCGAAAGACAAGGCCGAAATTGGATCGGCATCTCAAGAATTTTAGGTTACCTTAGAAATCACTACCATTGATGATGAAATGAAAATTAAATAGTTAGGTTATGTTAGATTGTTTTAGCTTCAATTGATCATACTTCTTTCCGTAGGTAAATTTGTGAAATGAATTTTGCTTAGATCAGTTTTCGTCATTTTCGTCGTTCAACTTTTTTATTGTGTAAATGCTGATGAAGTTCACGGCTAATTAGAATCGAAAGAAACTTATGGAGTTTTCAATTTCCTGGAATTAGTAAATTTTCTTGCATGCCAATAAAAAATTACGAGATATAACCGCTTTAAAATGCGAAATCTTCAATTTACTTAATTGGCCACTAATTTAAATGTTTATTTTTTTTCATTAATGATATGGAAGTTGCTGATTCATGTGATTTCGTTTCTCTCTCTCTATATATTTTAGGGATCCTTCTTCCTTAATCCCTCGATTTTTCTTTTTTCGATTCTATCTCTATCAAGTTGCATATTATCTAGGGTTTGATTATCCGCCGGGAAAAACTATACTATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTTAGTGCTTGCTCTTCTCATCGGATCTTTTACTTGTGTTTCCGATCTGTTTATCTGTGGAGTTGTTTTCGTCTGATTGTGATGAAGTGAGGTGCTGTAGTGTAGTGCTTTGATCACTTGAATCGAAATTCTTATATTTGATTTTGTTGGGTTTCGTCTGCTTCGGCTCTGGAATTGATTTGGAGATGATGAATTTCGATTTGTTTCTTTAAATTGATGAAGAAACTATTTGAAATTAGGTTCACCATTGCATAGTAATCTCGAGCTTTGAATTGTGGCCTCCCTTTTTCTCTTGCATGTCATCCAATTGGCTAGAAATTGATACTGAATGCAGCTTATTTAGTTTTACTTGGTGAATAAGATGCCAAAGCCACAAGACTATGTTAGTTTGTTCTTTGGATGAACGAAGTTTCATTTGGGTTCATCCCTATTGTTTCTGTACAATGATGATGAATTGGTTTTGCATTTAAAGTAGCTGAATATACTAAAAATCTTCATTTGCAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGGGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

mRNA sequence

ATGAGTTCCACCGATGTTCCGACTAAGGGCGGCAGAGGCAAGAAATCTGCCGCCAAGTCAGTCTCCAGGTCTCACAAGGCTGGTCTTCAATTCCCCGTGGGTCGTATTGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGCGTAGGTTCTGGATCACCGGTTTACCTCTCCGCCGTCCTCGAATACCTCGCTGCCGAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGGGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Coding sequence (CDS)

ATGAGTTCCACCGATGTTCCGACTAAGGGCGGCAGAGGCAAGAAATCTGCCGCCAAGTCAGTCTCCAGGTCTCACAAGGCTGGTCTTCAATTCCCCGTGGGTCGTATTGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGCGTAGGTTCTGGATCACCGGTTTACCTCTCCGCCGTCCTCGAATACCTCGCTGCCGAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGGGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Protein sequence

MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDIGSASQEF

Homology

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BLAST of Carg07217 vs. NCBI nr
Match: KAG7014408.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 378.6 bits (971), Expect = 3.2e-101
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 120
           LEYLAAEGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 61  LEYLAAEGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 120

Query: 121 YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 180
           YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL
Sbjct: 121 YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 180

Query: 181 PKKAGSGKGDIGSASQEF 199
           PKKAGSGKGDIGSASQEF
Sbjct: 181 PKKAGSGKGDIGSASQEF 198

[Close]

BLAST of Carg07217 vs. NCBI nr
Match: KAG5514359.1 (hypothetical protein RHGRI_035685 [Rhododendron griersonianum])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 175/247 (70.85%), Postives = 183/247 (74.09%), Query Frame = 0


Query: 2   SSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVL 61
           S+    T GGRGK    K+VSRS KAGLQFPVGR+AR+L+KGRYAQRVGSGSP+YLSAVL
Sbjct: 3   STAPATTTGGRGKARGTKAVSRSLKAGLQFPVGRVARFLRKGRYAQRVGSGSPIYLSAVL 62

Query: 62  EYLAAE--------------------------------------------------GGRG 121
           EYLAAE                                                  GGRG
Sbjct: 63  EYLAAEVLELAGNAARDNKKNRIAPRHIQLAVRNDEEFSKLVFDQPHTMSSTAASKGGRG 122

Query: 122 KPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAG 181
           KPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAG
Sbjct: 123 KPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAG 182

Query: 182 NAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDI 199
           NAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNLLPKK G GKG+I
Sbjct: 183 NAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKVGKGKGEI 242

[Close]

BLAST of Carg07217 vs. NCBI nr
Match: KDP21535.1 (hypothetical protein JCGZ_22006 [Jatropha curcas])

HSP 1 Score: 307.4 bits (786), Expect = 9.1e-80
Identity = 183/284 (64.44%), Postives = 191/284 (67.25%), Query Frame = 0


Query: 1   MSSTDVPT------KGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSP 60
           MSST VP+      +GGRG  S AKSVSRSHKAGLQFPVGR+AR+LK+GRYAQRVGSGSP
Sbjct: 1   MSSTTVPSATAKTARGGRG-ISKAKSVSRSHKAGLQFPVGRVARFLKRGRYAQRVGSGSP 60

Query: 61  VYLSAVLEYLAAE----------------------------------------------- 120
           VYLSAVLEYLAAE                                               
Sbjct: 61  VYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVL 120

Query: 121 ---------------------------------GGRGKPKATKSVSRSQKAGLQFPVGRI 180
                                            GGRGKPK++KSVSRSQKAGLQFPVGRI
Sbjct: 121 PNIHQNLLPKKTAKGKGLGINRKPAMSSGGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRI 180

Query: 181 ARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 199
           ARFLKAGKYA+RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND
Sbjct: 181 ARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 240

[Close]

BLAST of Carg07217 vs. NCBI nr
Match: GAY40811.1 (hypothetical protein CUMW_054740 [Citrus unshiu])

HSP 1 Score: 298.5 bits (763), Expect = 4.2e-77
Identity = 176/295 (59.66%), Postives = 184/295 (62.37%), Query Frame = 0


Query: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS    TKGGRG+    K VSRSHKAGLQFPVGR+AR+LKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAE----------------------------------------------------- 120
           LEYLAAE                                                     
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQN 120

Query: 121 --------------------------------------------GGRGKPKATKSVSRSQ 180
                                                       GGRGKPK+TKS+SRS 
Sbjct: 121 LLPKKAAARKGEIGSVSQEASPESASKRAFALFCQSMSSAGSTKGGRGKPKSTKSISRSH 180

Query: 181 KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV 199
           KAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV
Sbjct: 181 KAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV 240

[Close]

BLAST of Carg07217 vs. NCBI nr
Match: KAF4368296.1 (hypothetical protein G4B88_008600 [Cannabis sativa])

HSP 1 Score: 295.0 bits (754), Expect = 4.7e-76
Identity = 179/293 (61.09%), Postives = 183/293 (62.46%), Query Frame = 0


Query: 1   MSSTDVPT--KGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLS 60
           M ST   T  KGGRGK  A KSVSRS KAGLQFPVGRIAR+LKKGRYAQRVGSGSPVYLS
Sbjct: 536 MDSTAAATTKKGGRGKPKANKSVSRSSKAGLQFPVGRIARFLKKGRYAQRVGSGSPVYLS 595

Query: 61  AVLEYLAAE--------------------------------------------------- 120
           AVLEYLAAE                                                   
Sbjct: 596 AVLEYLAAELLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIH 655

Query: 121 ------------------------------------------GGRGKPKATKSVSRSQKA 180
                                                     GGRGKPK++KSVSRS KA
Sbjct: 656 QTLLPKKVGKGKDEIGSASQEVYLYFDPDSKTLKMSTAATTKGGRGKPKSSKSVSRSSKA 715

Query: 181 GLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR 199
           GLQFPVGRIARFLK GKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR
Sbjct: 716 GLQFPVGRIARFLKNGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR 775

[Close]

BLAST of Carg07217 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.1e-62
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 67  EGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 126
           +GGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct: 8   KGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 67

Query: 127 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGS 186
           LELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK G 
Sbjct: 68  LELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 127

Query: 187 GKGDIGSASQEF 199
           GKG+IGSASQEF
Sbjct: 128 GKGEIGSASQEF 139

[Close]

BLAST of Carg07217 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.9e-62
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 67  EGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 126
           +GGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 127 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGS 186
           LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGK 130

Query: 187 GKGDIGSASQEF 199
            KGDIGSASQEF
Sbjct: 131 NKGDIGSASQEF 142

[Close]

BLAST of Carg07217 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-61
Identity = 122/132 (92.42%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 67  EGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 126
           +GGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 127 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGS 186
           LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGK 130

Query: 187 GKGDIGSASQEF 199
            KGDIGSASQEF
Sbjct: 131 NKGDIGSASQEF 142

[Close]

BLAST of Carg07217 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-61
Identity = 123/133 (92.48%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 66  AEGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAE 125
           A+GGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAAE
Sbjct: 6   AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAE 65

Query: 126 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAG 185
           VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK+G
Sbjct: 66  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125

Query: 186 SGKGDIGSASQEF 199
             KG+IGSASQEF
Sbjct: 126 KDKGEIGSASQEF 138

[Close]

BLAST of Carg07217 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-58
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 68  GGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 127
           GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 128 ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSG 187
           ELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKD 127

Query: 188 KGDIGSASQEF 199
           K DIGSASQEF
Sbjct: 128 KADIGSASQEF 138

[Close]

BLAST of Carg07217 vs. ExPASy TrEMBL
Match: A0A067JNE6 (Histone H2A OS=Jatropha curcas OX=180498 GN=JCGZ_22006 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.4e-80
Identity = 183/284 (64.44%), Postives = 191/284 (67.25%), Query Frame = 0


Query: 1   MSSTDVPT------KGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSP 60
           MSST VP+      +GGRG  S AKSVSRSHKAGLQFPVGR+AR+LK+GRYAQRVGSGSP
Sbjct: 1   MSSTTVPSATAKTARGGRG-ISKAKSVSRSHKAGLQFPVGRVARFLKRGRYAQRVGSGSP 60

Query: 61  VYLSAVLEYLAAE----------------------------------------------- 120
           VYLSAVLEYLAAE                                               
Sbjct: 61  VYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVL 120

Query: 121 ---------------------------------GGRGKPKATKSVSRSQKAGLQFPVGRI 180
                                            GGRGKPK++KSVSRSQKAGLQFPVGRI
Sbjct: 121 PNIHQNLLPKKTAKGKGLGINRKPAMSSGGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRI 180

Query: 181 ARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 199
           ARFLKAGKYA+RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND
Sbjct: 181 ARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRND 240

[Close]

BLAST of Carg07217 vs. ExPASy TrEMBL
Match: A0A2H5NLL6 (Histone H2A OS=Citrus unshiu OX=55188 GN=CUMW_054740 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 176/295 (59.66%), Postives = 184/295 (62.37%), Query Frame = 0


Query: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS    TKGGRG+    K VSRSHKAGLQFPVGR+AR+LKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSEAAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAE----------------------------------------------------- 120
           LEYLAAE                                                     
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQN 120

Query: 121 --------------------------------------------GGRGKPKATKSVSRSQ 180
                                                       GGRGKPK+TKS+SRS 
Sbjct: 121 LLPKKAAARKGEIGSVSQEASPESASKRAFALFCQSMSSAGSTKGGRGKPKSTKSISRSH 180

Query: 181 KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV 199
           KAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV
Sbjct: 181 KAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV 240

[Close]

BLAST of Carg07217 vs. ExPASy TrEMBL
Match: A0A7J6FC78 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_008600 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76
Identity = 179/293 (61.09%), Postives = 183/293 (62.46%), Query Frame = 0


Query: 1   MSSTDVPT--KGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLS 60
           M ST   T  KGGRGK  A KSVSRS KAGLQFPVGRIAR+LKKGRYAQRVGSGSPVYLS
Sbjct: 536 MDSTAAATTKKGGRGKPKANKSVSRSSKAGLQFPVGRIARFLKKGRYAQRVGSGSPVYLS 595

Query: 61  AVLEYLAAE--------------------------------------------------- 120
           AVLEYLAAE                                                   
Sbjct: 596 AVLEYLAAELLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIH 655

Query: 121 ------------------------------------------GGRGKPKATKSVSRSQKA 180
                                                     GGRGKPK++KSVSRS KA
Sbjct: 656 QTLLPKKVGKGKDEIGSASQEVYLYFDPDSKTLKMSTAATTKGGRGKPKSSKSVSRSSKA 715

Query: 181 GLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR 199
           GLQFPVGRIARFLK GKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR
Sbjct: 716 GLQFPVGRIARFLKNGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPR 775

[Close]

BLAST of Carg07217 vs. ExPASy TrEMBL
Match: A0A7J6EH34 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_007218 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.0e-72
Identity = 179/327 (54.74%), Postives = 183/327 (55.96%), Query Frame = 0


Query: 1   MSSTDVPT--KGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLS 60
           M ST   T  KGGRGK  A KSVSRS KAGLQFPVGRIAR+LKKGRYAQRVGSGSPVYLS
Sbjct: 80  MDSTAAATTKKGGRGKPKANKSVSRSSKAGLQFPVGRIARFLKKGRYAQRVGSGSPVYLS 139

Query: 61  AVLEYLAAE--------------------------------------------------- 120
           AVLEYLAAE                                                   
Sbjct: 140 AVLEYLAAELLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIH 199

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 200 QTLLPKKVGKGKDEIGSASQDLVEEVGLLCKHSLSLQYVSFSLSCRSSCSITFPRVYLYF 259

Query: 181 ----------------GGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGA 199
                           GGRGKPK++KSVSRS KAGLQFPVGRIARFLK GKYAERVGAGA
Sbjct: 260 DPDSKTLKMSTAATTKGGRGKPKSSKSVSRSSKAGLQFPVGRIARFLKNGKYAERVGAGA 319

[Close]

BLAST of Carg07217 vs. ExPASy TrEMBL
Match: A0A150G9R4 (Histone H2A OS=Gonium pectorale OX=33097 GN=GPECTOR_42g800 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.1e-69
Identity = 144/199 (72.36%), Postives = 163/199 (81.91%), Query Frame = 0


Query: 11  GRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAE--- 70
           G+GK +  K+VSRS KAGLQFPVGRIARYLKKG+YA+R+G+G+PVYL+AVLEYL AE   
Sbjct: 5   GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64

Query: 71  -----------GGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 130
                         GK    K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+
Sbjct: 65  LAGNAARDNKKNRIGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLA 124

Query: 131 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIH 190
           AVLEYL AEVLELAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG+VTIA+GGVLPNIH
Sbjct: 125 AVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIH 184

Query: 191 QNLLPKKAGSGKGDIGSAS 196
             LLPKK+  GK + GSA+
Sbjct: 185 AVLLPKKSKGGKAEDGSAA 203

[Close]

BLAST of Carg07217 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 238.0 bits (606), Expect = 6.3e-63
Identity = 123/132 (93.18%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 67  EGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 126
           +GGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 127 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGS 186
           LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGK 130

Query: 187 GKGDIGSASQEF 199
            KGDIGSASQEF
Sbjct: 131 NKGDIGSASQEF 142

[Close]

BLAST of Carg07217 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 122/132 (92.42%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 67  EGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 126
           +GGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 127 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGS 186
           LELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGK 130

Query: 187 GKGDIGSASQEF 199
            KGDIGSASQEF
Sbjct: 131 NKGDIGSASQEF 142

[Close]

BLAST of Carg07217 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 69  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 128
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 129 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 188
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Carg07217 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 69  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 128
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 129 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 188
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Carg07217 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-52
Identity = 107/124 (86.29%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 69  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 128
           GRGK      A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 129 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 188
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

The following BLAST results are available for this feature:

BLAST of Carg07217 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014408.1	3.2e-101	100.00	Histone H2AX, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG5514359.1	1.3e-81	70.85	hypothetical protein RHGRI_035685 [Rhododendron griersonianum]	[more]
KDP21535.1	9.1e-80	64.44	hypothetical protein JCGZ_22006 [Jatropha curcas]	[more]
GAY40811.1	4.2e-77	59.66	hypothetical protein CUMW_054740 [Citrus unshiu]	[more]
KAF4368296.1	4.7e-76	61.09	hypothetical protein G4B88_008600 [Cannabis sativa]	[more]

BLAST of Carg07217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	3.1e-62	93.18	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
Q9S9K7	8.9e-62	93.18	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	2.0e-61	92.42	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
P35063	2.0e-61	92.48	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	2.1e-58	90.08	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Carg07217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067JNE6	4.4e-80	64.44	Histone H2A OS=Jatropha curcas OX=180498 GN=JCGZ_22006 PE=3 SV=1	[more]
A0A2H5NLL6	2.0e-77	59.66	Histone H2A OS=Citrus unshiu OX=55188 GN=CUMW_054740 PE=3 SV=1	[more]
A0A7J6FC78	2.3e-76	61.09	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_008600 PE=3 SV=1	[more]
A0A7J6EH34	2.0e-72	54.74	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_007218 PE=3 SV=1	[more]
A0A150G9R4	2.1e-69	72.36	Histone H2A OS=Gonium pectorale OX=33097 GN=GPECTOR_42g800 PE=3 SV=1	[more]

BLAST of Carg07217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	6.3e-63	93.18	gamma histone variant H2AX	[more]
AT1G08880.1	1.4e-62	92.42	Histone superfamily protein	[more]
AT4G27230.1	1.3e-52	87.90	histone H2A 2	[more]
AT4G27230.2	1.3e-52	87.90	histone H2A 2	[more]
AT5G54640.1	8.6e-52	86.29	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 121..134 score: 89.46 coord: 135..149 score: 75.49 coord: 106..121 score: 84.58 coord: 77..99 score: 69.94 coord: 163..181 score: 70.48
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 69..186 e-value: 6.5E-76 score: 268.2 coord: 8..68 e-value: 1.2E-4 score: 23.7
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 71..183 e-value: 6.17903E-66 score: 196.402
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 68..190 e-value: 1.1E-62 score: 211.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 7..67 e-value: 8.5E-25 score: 89.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 5..67
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 80..183
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 74..152 e-value: 3.1E-14 score: 53.5
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 155..188 e-value: 1.7E-18 score: 66.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR23430:SF288	HISTONE H2A	coord: 7..67
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 67..196
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..67
None	No IPR available	PANTHER	PTHR23430:SF288	HISTONE H2A	coord: 67..196
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 85..91
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07217-RA	Carg07217-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity