Carg07193 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07193
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 8238316 .. 8239064 (-)
RNA-Seq ExpressionCarg07193
SyntenyCarg07193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTTGAAAACCTTGAGGGGAAGCCTGATAGGGAAAGCTCAATGAAGATAACATCTGCTAGCGGTGGGCTTGAGCTGTTAGACTTAAACTTCTCAAGGTTTTTAAAACGCGTCTGCTAGGGGAAGCTCAATGAAGATAATATCTGCTAGCGGTAGGCTTGAGCTATTAGACTTAAACTTCTTGCTTCTAAGGTCTCTCCTCGTTCTTAGTCCCATGGTATCATCTATTTTCTCGAGTGGTATCATCTTCTTCCAGAACAATATCATATTTGTGAAACTGCAGTCGGCGTTCTTTGGATTTTTCGTATCGAGGGCGTCCCTCTTGAGGTGGATAGCTAAATGTCTTTAGAGGCTGTTAAACCGTTCGATAAGCAATTCATTTTCCGTATCTTGGGAGGGAGTGGAGTTCGAGGGGTTGGTTCAATTTAATTCTTCTTGATGGACATTCGTTTTCATTCCGTCTTCGTGCTTTAAAAACAATCTCGAGTAGGTCCTTGAACTTTCAATCCAATGTAGCGGAAGTTAATATGCACGAAAACGATGCTTTCGGCTTTGGTTGTTTGGTAATGCTGATTGATATCTCTCATTGCAGGCTGCTGCAGATTCTGATGTTGGTGGAGATGGCTGAGAACCCAATTTTGTTCATAGGCATTTGATTCATATTATGACGATGGTCAATAAGATTTTTATGTTCATCAATTATTGTAAGTTATATATTTTTTTTATGCGAGCATTTCATTTTTTTT

mRNA sequence

ATGCGTTTTGAAAACCTTGAGGGGAAGCCTGATAGGGAAAGCTCAATGAAGATAACATCTGCTAGCGGTGGGCTTGAGCTGTTAGACTTAAACTTCTCAAGGTTTTTAAAACGCTCCCATGGTATCATCTATTTTCTCGAGTGGTATCATCTTCTTCCAGAACAATATCATATTTGTGAAACTGCAGTCGGCGTTCTTTGGATTTTTCGTATCGAGGGCGTCCCTCTTGAGGCTGCTGCAGATTCTGATGTTGGTGGAGATGGCTGAGAACCCAATTTTGTTCATAGGCATTTGATTCATATTATGACGATGGTCAATAAGATTTTTATGTTCATCAATTATTGTAAGTTATATATTTTTTTTATGCGAGCATTTCATTTTTTTT

Coding sequence (CDS)

ATGCGTTTTGAAAACCTTGAGGGGAAGCCTGATAGGGAAAGCTCAATGAAGATAACATCTGCTAGCGGTGGGCTTGAGCTGTTAGACTTAAACTTCTCAAGGTTTTTAAAACGCTCCCATGGTATCATCTATTTTCTCGAGTGGTATCATCTTCTTCCAGAACAATATCATATTTGTGAAACTGCAGTCGGCGTTCTTTGGATTTTTCGTATCGAGGGCGTCCCTCTTGAGGCTGCTGCAGATTCTGATGTTGGTGGAGATGGCTGA

Protein sequence

MRFENLEGKPDRESSMKITSASGGLELLDLNFSRFLKRSHGIIYFLEWYHLLPEQYHICETAVGVLWIFRIEGVPLEAAADSDVGGDG
Homology
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BLAST of Carg07193 vs. NCBI nr
Match: KAG7014384.1 (hypothetical protein SDJN02_24561, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 6.7e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MRFENLEGKPDRESSMKITSASGGLELLDLNFSRFLKRSHGIIYFLEWYHLLPEQYHICE 60
          MRFENLEGKPDRESSMKITSASGGLELLDLNFSRFLKRSHGIIYFLEWYHLLPEQYHICE
Sbjct: 1  MRFENLEGKPDRESSMKITSASGGLELLDLNFSRFLKRSHGIIYFLEWYHLLPEQYHICE 60

Query: 61 TAVGVLWIFRIEGVPLEAAADSDVGGDG 89
          TAVGVLWIFRIEGVPLEAAADSDVGGDG
Sbjct: 61 TAVGVLWIFRIEGVPLEAAADSDVGGDG 88

The following BLAST results are available for this feature:
BLAST of Carg07193 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014384.16.7e-43100.00hypothetical protein SDJN02_24561, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg07193 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07193 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07193 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07193-RACarg07193-RAmRNA