Carg07185 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07185
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionheat shock factor-binding protein 1
LocationCarg_Chr17: 8185745 .. 8188407 (+)
RNA-Seq ExpressionCarg07185
SyntenyCarg07185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGCAAAATGGTAACTTCGTAGAAAGTGGGGGCGAAATGAGCATCACTTAAGCAAGCAAGACAGCCATTCGCCACATTCGTCTTTCGCATTCTTCACCCGCTAACCAGACGATTGGGCATCGCGAGTTTTAGCATTATCTCCCGATTGTCTCTTGAAGATCCAGTTTTGCAGTTATGGTGAGCGTTTTCCCTTCTTCAACCTCATTCCATTCAATTACGCTTCTTCACTGTTGAATGTCATTTCTCTCGTGTTTTCAATTCGCATAGCTTAGTTGTGAAACTTTTGATGGAATGCGAAATCCCTTCGGGTTTCCTTATTCTTCTGACATGAATTTCTGTTGTGAATTTTATTCGCGTGGTCGTCAAATGATTCTGTTCAGCTTTAGTTGTTGAATCGTCTTGTAACCTTTTGCTCACTTTGAACAATGCCCATTAGATCACCTAGGTTTTAGATACTAAAGGTTGGTTTGGGGTTCGGTTGTTAGTGACTTTCTTGTGGGGCTCATGTTTTCAACTTTTGAATCGATGGATGGTTCAAAGCTTCGTCTCCTCGTTAATGTGATAATGTGTTAAGATTTCAATCTCTCTGGGATTTTTTAAAAAGCTGCGGTTGTTGATTTGGTCGATGTCTGCATGCCATGTAGTATGGTGTGGTTTTGCAATTGAGAGATCGAATCTTCTCGATAGTGTGTGGATCCTTGTGTCTTCTCGATAGTATTTGCTTGTGGATCCTCCCTTTTTCATATGATTGTCTTTTCCTTTTGTCAAATCCCTTATTTTTCTCATGGGAGGATGAGCACACTTGACCATATCCAAATATTGTCTTCTGCCCTTCTAGGCCCTTATGGTGCAACGTGAATCATGTTCTAAGGGGGGTTCTTAGTTTCCTGAGTCAATTTGGGACATATTTTTGGAGGCTTTGGTGTCCAAGTGACCCGTATCAGTTCGGATAAGGCTGTGACGTAGTAGGTCTGATTCCACCCGTTTCGAGATAGAGGGATGTTTCTTTAGCATGTTGCTTTCTTTGTGGTCTTATGGAATATCTAGCTTGAAAGAAATAGAATGATACTTGGGTATGGAGAGTTCTAGGGGGGAAATTTGGGCCTTGGCTAGGTTTGCCTCCTTCTAGGTCTTGGCTACTAAGGATTTTTGCGATTACCCTTTATCCATCATCCTTTTGAGCTATAGCCCCTTTTCGTAATTTTGTATATTGTTAACTTTTTTGTTTTTGGGTCTTTTTGTATTGCCCTTGTATATTCTCTTAGTTGTGGCTGATTGCTTTTGGGAGGGTAAAGATCATTTGACCATGTCCAGGGACCAAAACATCAGTTTTCTAGGTTATTTTGATCACTGTTTTATGTATAGATTGCTACTGATTTCTATTCCCATATAATTTTAACATACTCGAATCAGACTGTTAAATGTAATTGTCAATACTGAAGATGTTTGATGCTTGATCTTAATTCTTTTTCAAGATTGTCACCCACCACCTCCGATGGTTCTTATTTGTTTGACTTATTATTGTTCATATTATTTGACTGGTTTTTTTTTGTACCATTGTGTGACAGTGTGAAATACACGTCTTACTCTTTTTGTCCTGCAGGATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGTGAGTTCATTTTCTTTTCTTTTAGTTCATTCTCTCTGTTTATCCCCATTTGATTGTCAAGCCTACGTCATTTAAAAGGTTGGTGTTATAAGGTTTGTCATTTCCCTTTGACGTATACTCTTGTTCTGTCTAAAATTTGATTCATAAGGCATTCTTGATTGTTTCTTGCTGGTTTATAGATTGGTATTCACTGGCCCCTTTTTTTTTTGCAGGTGCAAAATCTTCTTCAACAGATGGTGAGTCTCAGTTAAGTGTAAGTCTCTGGCAGAGAAGTTTATGTCTAACAAAATCCTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTTCTAAATAATTCTATTTATTTCTAGCATTTCTCTAAAGTCGTAATTATGATGATTAATTGTTTCCGATACGCTTGGATACATGTTGATTTTTGAGTTTTGCGAAATAACTCGTATATTTATTTATTCGTTTAATAGGCTAGATGGTGCCATTTCTGAGCATTATCATTTTCTTTCACTCTATCAAACAATGATCTGGTGAACGTTGTATCAGAATTCGTTTGACTTTCTAGTACAGCTTTTGGAAAAGAAGTAGATTGTAGGATAGCATAGCTTTCTTGTAATAACTTATAGTAAATAAGCTTTCCTTAACTTGAGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAGTTGAGAGTGTATGCTTTATTGTTGAGTTTGATAACTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAATTGAAGCCAATGCTTAGGATGAAACAGAAAAGTGCAATATGTTCTAGACTTGTACTTGCTATTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCT

mRNA sequence

AATGGCAAAATGGTAACTTCGTAGAAAGTGGGGGCGAAATGAGCATCACTTAAGCAAGCAAGACAGCCATTCGCCACATTCGTCTTTCGCATTCTTCACCCGCTAACCAGACGATTGGGCATCGCGAGTTTTAGCATTATCTCCCGATTGTCTCTTGAAGATCCAGTTTTGCAGTTATGGATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGCATTCTTGATTGTTTCTTGCTGGTTTATAGATTGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAGTTGAGAGTGTATGCTTTATTGTTGAGTTTGATAACTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAATTGAAGCCAATGCTTAGGATGAAACAGAAAAGTGCAATATGTTCTAGACTTGTACTTGCTATTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCT

Coding sequence (CDS)

ATGGATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGCATTCTTGATTGTTTCTTGCTGGTTTATAGATTGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAG

Protein sequence

MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSALK
Homology
[Close]
BLAST of Carg07185 vs. NCBI nr
Match: KAG7014376.1 (hypothetical protein SDJN02_24553 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSP 60
          MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSP
Sbjct: 1  MDGHDSEDPKQSTADMTVFAFLIVSCWFIDCILDEMGSRINELEQSINDLKSEMGVEGSP 60

Query: 61 SPMTPSKSSADEVKKDEGSALK 83
          SPMTPSKSSADEVKKDEGSALK
Sbjct: 61 SPMTPSKSSADEVKKDEGSALK 82

[Close]
BLAST of Carg07185 vs. NCBI nr
Match: XP_022953167.1 (heat shock factor-binding protein 1-like isoform X2 [Cucurbita moschata] >XP_023547518.1 heat shock factor-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 5.9e-25
Identity = 72/92 (78.26%), Postives = 73/92 (79.35%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSEDPKQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 83
          KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 91

[Close]
BLAST of Carg07185 vs. NCBI nr
Match: XP_022991819.1 (heat shock factor-binding protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 120.9 bits (302), Expect = 5.0e-24
Identity = 71/92 (77.17%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSED KQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 83
          KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 91

[Close]
BLAST of Carg07185 vs. NCBI nr
Match: KAG6575841.1 (Heat shock factor-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 67/87 (77.01%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSEDPKQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 78
          KSEMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]
BLAST of Carg07185 vs. NCBI nr
Match: XP_022953166.1 (heat shock factor-binding protein 1-like isoform X1 [Cucurbita moschata] >XP_023547517.1 heat shock factor-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 67/87 (77.01%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSEDPKQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 78
          KSEMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]
BLAST of Carg07185 vs. ExPASy Swiss-Prot
Match: Q8GW48 (Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-13
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSED KQSTADMT F           F  +S   I  I D+MG RINELEQSINDL
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKI-DDMGGRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          ++EMGVEG+P    P+  S DE K    S+
Sbjct: 61 RAEMGVEGTP---PPASKSGDEPKTPASSS 86

[Close]
BLAST of Carg07185 vs. ExPASy TrEMBL
Match: A0A6J1GMG8 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455787 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.9e-25
Identity = 72/92 (78.26%), Postives = 73/92 (79.35%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSEDPKQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 83
          KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 91

[Close]
BLAST of Carg07185 vs. ExPASy TrEMBL
Match: A0A6J1JVW1 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 71/92 (77.17%), Postives = 72/92 (78.26%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSED KQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 83
          KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSALK 91

[Close]
BLAST of Carg07185 vs. ExPASy TrEMBL
Match: A0A6J1GM89 (heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455787 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 67/87 (77.01%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSEDPKQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 78
          KSEMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]
BLAST of Carg07185 vs. ExPASy TrEMBL
Match: A0A6J1JXC9 (heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.6e-22
Identity = 66/87 (75.86%), Postives = 67/87 (77.01%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSED KQSTADMTVF           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 78
          KSEMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 61 KSEMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]
BLAST of Carg07185 vs. ExPASy TrEMBL
Match: A0A1S3BSN9 (heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-21
Identity = 64/90 (71.11%), Postives = 68/90 (75.56%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSED KQSTADMT+F           F  +S   I  I DEMGSRINELEQSINDL
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKI-DEMGSRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          K+EMGVEGSPSP+ PSKS ADEVKKDEGSA
Sbjct: 61 KAEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]
BLAST of Carg07185 vs. TAIR 10
Match: AT4G15802.1 (heat shock factor binding protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-14
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MDGHDSEDPKQSTADMTVFA----------FLIVSCWFIDCILDEMGSRINELEQSINDL 60
          MDGHDSED KQSTADMT F           F  +S   I  I D+MG RINELEQSINDL
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKI-DDMGGRINELEQSINDL 60

Query: 61 KSEMGVEGSPSPMTPSKSSADEVKKDEGSA 81
          ++EMGVEG+P    P+  S DE K    S+
Sbjct: 61 RAEMGVEGTP---PPASKSGDEPKTPASSS 86

The following BLAST results are available for this feature:
BLAST of Carg07185 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014376.13.9e-37100.00hypothetical protein SDJN02_24553 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022953167.15.9e-2578.26heat shock factor-binding protein 1-like isoform X2 [Cucurbita moschata] >XP_023... [more]
XP_022991819.15.0e-2477.17heat shock factor-binding protein 1-like isoform X2 [Cucurbita maxima][more]
KAG6575841.12.1e-2277.01Heat shock factor-binding protein, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022953166.12.1e-2277.01heat shock factor-binding protein 1-like isoform X1 [Cucurbita moschata] >XP_023... [more]
BLAST of Carg07185 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GW481.4e-1354.44Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 S... [more]
BLAST of Carg07185 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GMG82.9e-2578.26heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=366... [more]
A0A6J1JVW12.4e-2477.17heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1GM891.0e-2277.01heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=366... [more]
A0A6J1JXC98.6e-2275.86heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 ... [more]
A0A1S3BSN94.3e-2171.11heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3... [more]
BLAST of Carg07185 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G15802.11.0e-1454.44heat shock factor binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..82
NoneNo IPR availablePANTHERPTHR19424:SF8HEAT SHOCK FACTOR-BINDING PROTEIN 1-LIKEcoord: 1..76
IPR009643Heat shock factor binding 1PANTHERPTHR19424HEAT SHOCK FACTOR BINDING PROTEIN 1coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07185-RACarg07185-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070370 cellular heat acclimation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0003714 transcription corepressor activity