Carg07177 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07177
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleolar protein 16
Location	Carg_Chr17: 8138998 .. 8140030 (-)
RNA-Seq Expression	Carg07177
Synteny	Carg07177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGGTAAGTTTGAGTTTAATCACCCACCATCAGCCTTGGGATTTTTTATCACTATCAGTGTTGCAATTTTTTAAATGCTTCTTTTAGAGCTACGCAAGAACCATTACTCATCCAGATATTGTCTTCATTGGACTTCCCTCTCGGGATTCTCCTCAAAGTTGTTGGGTTTTCCCTTCAGGCTTACCCATTCCGCCTCTTCTAAAGAGAGGTTTACACACCCTTGGAAGGAATGTTCATACTCAAATAGAATGTTGATTGACTTGATATTAATGTCTTATTTGTCACGAATCCACATGAGGATGCCTATGCAAACTTTTGAGTTGTGTTTCTGATTTGATCTTGGGCTGATTCTGTGTTCTTTCTTTTGTGTACATTAGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGATATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCACGAGGTAGGCTTCAGTTTTACTTGCTTTTAGATCGGACTAATTGGCTTATTTTTTGCTCACTGAAAGTTGTTTTTCTGCAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAA

mRNA sequence

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGATATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCACGAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAA

Coding sequence (CDS)

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCTCCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGATATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAGTATGGAGATGATCACGAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTTTAGATAAGAATCCATTGATATTGACTCGTTAA

Protein sequence

MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

Homology

[Close]

BLAST of Carg07177 vs. NCBI nr
Match: KAG7014368.1 (hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 1.0e-104
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg07177 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRR GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg07177 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg07177 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 189/193 (97.93%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           H CLDKNPLILTR
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Carg07177 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.2e-96
Identity = 178/193 (92.23%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WD+KA VIHN
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS PPSD+PDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLIL R
Sbjct: 181 HSCLDKNPLILIR 193

[Close]

BLAST of Carg07177 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.3e-104
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRR GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg07177 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Carg07177 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.5e-93
Identity = 174/193 (90.16%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 189

[Close]

BLAST of Carg07177 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.5e-93
Identity = 174/193 (90.16%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDPDSVLDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSCLDKNPLILTR 194
           HSCLDKNPLILTR
Sbjct: 181 HSCLDKNPLILTR 189

[Close]

BLAST of Carg07177 vs. ExPASy TrEMBL
Match: A0A6J1DE29 (Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.7e-92
Identity = 175/194 (90.21%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120

Query: 121 LGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKR+ GKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCLDKNPLILTR 194
           YHSC DKNPLILTR
Sbjct: 181 YHSCPDKNPLILTR 194

[Close]

BLAST of Carg07177 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 247.7 bits (631), Expect = 7.8e-66
Identity = 123/196 (62.76%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60
           M RSRRKY+ SRAKV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSL-PPSDDP---DSVLDSSGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RTDH+++ D L VPP + PP+DDP   +     SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKL 180
           KTALGK+R+ GKSAPL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSCLDKNPLILT 193
           C RY    DKNP++++
Sbjct: 181 CTRYQIYKDKNPILVS 193

The following BLAST results are available for this feature:

BLAST of Carg07177 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014368.1	1.0e-104	100.00	hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022954094.1	1.5e-103	99.48	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]
XP_022991747.1	2.8e-102	98.45	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	1.1e-101	97.93	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_038898931.1	5.2e-96	92.23	nucleolar protein 16 [Benincasa hispida]	[more]

BLAST of Carg07177 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRW5	7.3e-104	99.48	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A6J1JMQ4	1.4e-102	98.45	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A5A7VLA5	7.5e-93	90.16	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	7.5e-93	90.16	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]
A0A6J1DE29	3.7e-92	90.21	Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1	[more]

BLAST of Carg07177 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	7.8e-66	62.76	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 114..181 e-value: 7.8E-16 score: 58.7
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07177-RA	Carg07177-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus