Carg07127 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07127
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 7918577 .. 7920140 (-)
RNA-Seq Expression	Carg07127
Synteny	Carg07127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAATTTTGTGTTATATAAATATTGGAAAATGAATGCACCTAAATAAAAATGGTTTTAATTTTTTTTTATTAAAAAAAAAAAATCTATTTTTCATATATTTTCATATTAAATAAATCCTGCCGCGAACGCTACTCTCTCTCTCCCAACAGGCTGCTTGAAAGCTTACTATCCCAATATTGAACCCTAAACCCTCCCAGTTCGCGAAGCGCAAATTCAGACGAGTTTCCACCGCTAGATGGTGGCGGCCGCAATCAGAATACCATAAGCAGTTCCTATCATCTTGTACCATCCGATTGCTTCGATCTCCTCCGGTAATAACTCTGAGTTATTTTCTAGATCCACTGTTTTCTTTGATTTTCGATTTTTTTTTGTCGGATTGTACGTATGTTGAATGTATGCGTTCTCTTTTGTCTCTTATTTGTTGAATTGGTGATTTGTACTCTTTCCGTTTTGGATTTTTTTTGGATTTGAATTTGATTTCGAGTAGGTGCAAGGGCTGGTTTTCTGTGCATTTTGTGTTTTTTTTCGGCAAAACCTAGTTTCGATTTTCCTGGGGTGTGGATTTGAGAGACTGCGATGGATGGTGTGGTGTTTAGTTTGATTGTATTTCATGAGTTTGGAGATGTTGAATGGAAATTTGGTGTCCTTTAGTGAAAATAAGCCAAAAAGGAGCAATCCATCAGAGCCGTTTTACTGGAATGGGGAACATACAGCAGAGGAGGGGAGGATGAGATTAGTATATTAGCAGAGATACATAATAATATGAATAAAAAGATAGCATAAGAACCCAAATCAATGAGTTTCTGTGATACATTACATTCAAAGATGAGGGAGGTCACACTTCCTTTTGGGTGTTTGGAACTAGAAAATTTCATGGTTATTTCTTATTTTAAACCATTCAAGCCCTTTTTCTGTAGAGCCTTTTGCCTTTTGTCTGATATCCATCGAGTTAAAATTCTAAATTTGACTGATTCATTAGATACATATTAGTCAAAACAAGATGATTTTCATGGAAGTTGTTTAGCTGGTATGCTACTTGAACATTCTTATAATCCATATATTAAGGCTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTTGTCAAATATCGTGTGGGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTACCGTTCTTTTTCGGTGCACTCGCTTTATATCTCCGACACACAAGGGGAAGGACGCGGTGGGAAGAAAGCAGCGCTAGCCTCTGTCTGGTCGATCATTCCACTGACATCTTGCATTCACGCCTCTGATTGACTGCCGTTCGGGGTTGTAGTTGTAGATTATATATTAAGGAGATATTTCATCGAGTTGAAATTTGACTGATTCATTAGATACATGTTAGTCAAAACAGGTTTTGAGATAATTTGTTTGATTTATAGATATCGAATAGACTTTTCATGGAATAAAATGCTCTCATAAATGATTAGATTGTGTTTTAACACTCTTTTTTAGACAGGAATTTGGAATTTGGTAACGATCATTGCAAGAGTGGCGCTTGCAAGCGAAAGGGCTGA

mRNA sequence

ATGATTAATTTTGTTTCGCGAAGCGCAAATTCAGACGAGTTTCCACCGCTAGATGGTGGCGGCCGCAATCAGAATACCATAAGCAGTTCCTATCATCTTGTACCATCCGATTGCTTCGATCTCCTCCGGAATTTGGAATTTGGTAACGATCATTGCAAGAGTGGCGCTTGCAAGCGAAAGGGCTGA

Coding sequence (CDS)

ATGATTAATTTTGTTTCGCGAAGCGCAAATTCAGACGAGTTTCCACCGCTAGATGGTGGCGGCCGCAATCAGAATACCATAAGCAGTTCCTATCATCTTGTACCATCCGATTGCTTCGATCTCCTCCGGAATTTGGAATTTGGTAACGATCATTGCAAGAGTGGCGCTTGCAAGCGAAAGGGCTGA

Protein sequence

MINFVSRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRKG

Homology

[Close]

BLAST of Carg07127 vs. NCBI nr
Match: KAG7014319.1 (hypothetical protein SDJN02_24496, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 5.5e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MINFVSRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRK 60
          MINFVSRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRK
Sbjct: 1  MINFVSRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRK 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of Carg07127 vs. NCBI nr
Match: KAG6575771.1 (DELLA protein RGL2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 7.5e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 6   SRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRKG 62
           SRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRKG
Sbjct: 503 SRSANSDEFPPLDGGGRNQNTISSSYHLVPSDCFDLLRNLEFGNDHCKSGACKRKG 558

The following BLAST results are available for this feature:

BLAST of Carg07127 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014319.1	5.5e-28	100.00	hypothetical protein SDJN02_24496, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575771.1	7.5e-25	100.00	DELLA protein RGL2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg07127 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07127 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07127 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07127-RA	Carg07127-RA	mRNA