Carg07068 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07068
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr01: 3575600 .. 3578343 (+)
RNA-Seq Expression	Carg07068
Synteny	Carg07068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCTGCTTCTTCAGAATCTCGGAGGAATTCACTGCTATCAAGAACGGATACTGGGCTTAATTCGTCGGAGCTCTGCTCTGATTCTACCTTCCTCGTTGATCTTCTGCCATGGCGATCCTTGGTTGAAATTCTGGAGGTTGGTTTATTTCTTGAGACTCTTTTTCTTGATTTCTTCTTTTGTTTCAAATCAATTAGGACGAACTCATTGGCTTCTTCTGGATTGAATATCTTCTTCTTCGTCTTTCTCACGTAAGAATGCTCTGTTTTGTTGCTTCCCCTGTTTTTGCATTTTTCTTCTCCATGCCTTCTTGCTTTCGCTTTGAGTTCTTCATTTTTGCTGTCTCCTTCGAAGCTTAGGATAAAGTAATCTTCATTTTCAAGCTCGAGAAAGGTGGGTATCTCTCGAAACGACTGTGTTGATCTAACCCCTTTATGTCTGCCTTCAAGGTGTTTGTAGAAATGCTCCACAGAGTTCATGGATTGAGTTCTTGCTATTGAATTACAATTCTGCTTCATATCTGGCATGGTATCCAAACCCATCAGCCTGGCCACAATTCCAGCGGTGGGCTTGGCCTCAATCCCACCATTTGTGTCTTTCATGACACCCACGTTCTTAACATTGTCCTCAGACTTTAATGAGCTGGTTTCTTCTGTAGTCTGATCGGACGGGTGCGTCGGGAGGCTACCGGAGCAGAGAATTCGGCGGAGAATTCCCGAAAGGCAGCTGGGGGTAGCTGCTGCAGCTCTGGGGTTGCAGACATGAGGATCAAAGTTGGAAGTGGAGAAGGAAGAAGTGGAAGAGCAAGAAGGAGAAGGCAACAACAACTTCATGCTGAGTTTTGAGGTTAGTATGATATGAAATTGAGTTAAAAAACACATAAAAGTAAGAAGGGTTATGTGTATGTGTTGTTTTCTTTTTTGGTGGTAAAGCAAGCAATCACAGAAAACAAAGCAAAGATGAAAATTTGAATGCATATGATGGAAAGTGAGAAAGAGAATGATAAAGTGGCGGGGTTTGTGTTTGAATAAGTTGGCTGTTCTAGTTTATTTATGGTGGCTGGGCCAGGATTATGTCTGCTTCCACTTTTGATGGGTCAATTCCTTCAGTTTTCTTGCTTCCCCACCTCACTTCAAAACCTTTAAAACAACCATATCTCATTGCATTTAGCCTTACAACTACGGTTGATTTTGAATATGAGCCCGTTTATGTAACGGCTCACTGCTAAGCTTTTAGTTTCGGGCTTTCCCTTGAGGTTTTGTTCTCCTCCTCAACTGATGTAGGATCTTATAATCCACTTCCCTTTTGGGGTCTAGTGTCATCGTTGACACCTGTTCCTCTCTCGTATCCATGTGGGATCTCATAATCCACCTACATTCGGGACCCAACGTCCTCCTTGGCACAATGCCTAGTGTCTGACTTTGGTACCATTTGTAACAGCCCAAACCCACGGCTGACAGATACTATTCTCTTTGGGCTTCCCCTCAAGATTCTCTTTGGGTTTCCACATCCTTATAAAGAATGCTTCGTTCTCCTCCTCAACCAACGTGGGATCTCACAATCCACCTCTCTTCGAACTCCAGCATCCTCGCTGGCACTCGTTCCTCTCTCCAACCGATATGGGATCTCACAATCCATCTCCCTTTGAGGCCCAGTATCCTCCCTAGTACATTGCTCAGTGTCTAACTCTGCCCAAGCATACCACTAGCAGATATTATCTTCTTTGGGTTTTCACTTCCAGGATTTCCTTCAAGGTTTTTAAAACGTGTTTGTTAGAGAGAAGTTTCCAAACACTTATAAAGAATGTTTCGTTCTCCTCCTCCTCCTCAACCAATGTAGGATCTTACAATCCACCCTTCTTCGGGCTTCAGTGTCCTCGCTGTAACACTCGTTCCTCTCTCCAATCAACGTGGGATCTCACAGAAGAGTCCAGCCATCTCGAAGAACTCAACTACCATAAGCATGTAAAAGGGATTAAGTGGACCCATTAGAGTAAAAAGAGCATCAAACTCATTGTGTAATCAGTGATAGCTAGCTTTTCCTAAACAGATAGGACCCATTTAAGTTTGTATGTTTCCATGGAAGTGAAGAAGAATATAGACATCTCGAAGAGCTCAACAACGTCTATATTCTTAACTCTCCTTCCATCTCGAAGAGCTCAAAAGTGCCTCCAACTCGGTTTGTAATCATTCATCCATAAGAGCCTAAAGTAAACAAAGGGTTCACATTAACACATATCATCATTCTATATTGCTGAAATCTGAGTTCTTTTTTTGGGGATTGGGAATGGAGTAATGAATATGAACAGGCAAAGCTTGACTTGTTATGTGGCTGTGTGTGTTCTGACTTAAAATTCTCTCTCTTTCTTTCTCTCTCCTGGTTCTCTTGTGTTTGGCAGCTGAAAATGGTGACAAACAAACAGCAACCACTCCACAGGCAATGTTGGACCAGAAGATTATACGGTTAATCCAAACCGACCAGTTCTGGTAAGAACAAGATTTTTGTTCTGTTCAGCTCTGCTCTGTTCTGCTCTCTCCATGTTTGTATGTTCTGTTTAGAAATTTGAATTTTAGGGTAAAGGGTATGGACTTTGATGTATATAAAGGACTGTTGTAGTCTTTTTGATCCGTAAAATCTTAGCTTAGAATGAGTTCAATAAGTCTTTAAATTTTTTGTCTTATTCGATAATGTTTTAAATTTACGAATTTATTAGACATAAAATTGAAAGTTTAAGACTCTGTT

mRNA sequence

ATGGGGCTGCTTCTTCAGAATCTCGGAGGAATTCACTGCTATCAAGAACGGATACTGGGCTTAATTCGTCGGAGCTCTGCTCTGATTCTACCTTCCTCGTTGATCTTCTGCCATGGCGATCCTTGGTTGAAATTCTGGAGTCTGATCGGACGGGTGCGTCGGGAGGCTACCGGAGCAGAGAATTCGGCGGAGAATTCCCGAAAGGCAGCTGGGGGTAGCTGCTGCAGCTCTGGGGTTGCAGACATGAGGATCAAAGTTGGAAGTGGAGAAGGAAGAACTGAAAATGGTGACAAACAAACAGCAACCACTCCACAGGCAATGTTGGACCAGAAGATTATACGGTTAATCCAAACCGACCAGTTCTGGTAAGAACAAGATTTTTGTTCTGTTCAGCTCTGCTCTGTTCTGCTCTCTCCATGTTTGTATGTTCTGTTTAGAAATTTGAATTTTAGGGTAAAGGGTATGGACTTTGATGTATATAAAGGACTGTTGTAGTCTTTTTGATCCGTAAAATCTTAGCTTAGAATGAGTTCAATAAGTCTTTAAATTTTTTGTCTTATTCGATAATGTTTTAAATTTACGAATTTATTAGACATAAAATTGAAAGTTTAAGACTCTGTT

Coding sequence (CDS)

ATGGGGCTGCTTCTTCAGAATCTCGGAGGAATTCACTGCTATCAAGAACGGATACTGGGCTTAATTCGTCGGAGCTCTGCTCTGATTCTACCTTCCTCGTTGATCTTCTGCCATGGCGATCCTTGGTTGAAATTCTGGAGTCTGATCGGACGGGTGCGTCGGGAGGCTACCGGAGCAGAGAATTCGGCGGAGAATTCCCGAAAGGCAGCTGGGGGTAGCTGCTGCAGCTCTGGGGTTGCAGACATGAGGATCAAAGTTGGAAGTGGAGAAGGAAGAACTGAAAATGGTGACAAACAAACAGCAACCACTCCACAGGCAATGTTGGACCAGAAGATTATACGGTTAATCCAAACCGACCAGTTCTGGTAA

Protein sequence

MGLLLQNLGGIHCYQERILGLIRRSSALILPSSLIFCHGDPWLKFWSLIGRVRREATGAENSAENSRKAAGGSCCSSGVADMRIKVGSGEGRTENGDKQTATTPQAMLDQKIIRLIQTDQFW

Homology

[Close]

BLAST of Carg07068 vs. NCBI nr
Match: KAG7036991.1 (hypothetical protein SDJN02_00611, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 5.3e-62
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGLLLQNLGGIHCYQERILGLIRRSSALILPSSLIFCHGDPWLKFWSLIGRVRREATGAE 60
           MGLLLQNLGGIHCYQERILGLIRRSSALILPSSLIFCHGDPWLKFWSLIGRVRREATGAE
Sbjct: 1   MGLLLQNLGGIHCYQERILGLIRRSSALILPSSLIFCHGDPWLKFWSLIGRVRREATGAE 60

Query: 61  NSAENSRKAAGGSCCSSGVADMRIKVGSGEGRTENGDKQTATTPQAMLDQKIIRLIQTDQ 120
           NSAENSRKAAGGSCCSSGVADMRIKVGSGEGRTENGDKQTATTPQAMLDQKIIRLIQTDQ
Sbjct: 61  NSAENSRKAAGGSCCSSGVADMRIKVGSGEGRTENGDKQTATTPQAMLDQKIIRLIQTDQ 120

Query: 121 FW 123
           FW
Sbjct: 121 FW 122

The following BLAST results are available for this feature:

BLAST of Carg07068 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036991.1	5.3e-62	100.00	hypothetical protein SDJN02_00611, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg07068 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07068 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07068 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07068-RA	Carg07068-RA	mRNA