Carg07066 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07066
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PHD finger-like domain-containing protein 5B
Location	Carg_Chr01: 3604567 .. 3605740 (-)
RNA-Seq Expression	Carg07066
Synteny	Carg07066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTTTGTGAGAAGTGTGATGGAAAGTGTGTAATCTGTGATTCTTATGTCCGCCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGATCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACGTAAGAAATACGGGTTCAAGAAACGTTAAAGTTAAAAAAAGGGATGGATCTTACTGTAATCTGACCGATTTCGGATTTCTAATCACAAACTCGCTTAGACATGTATGTATATGCTGATGAGAACAGTCGTTTGATCAAGGCCAGGGCCGGTGCCATTCACGAGTATCAAAAACTATATTGATTGTACTGCTTGTATTGTTGTGTTTATATTGATGGATAGGAACTTTGCTCAACCAAATTAATGGAGAAGAAATTGTTTGAAGAGGCTGTTACAAACAGAAAAAAAGGTACGAATATTCTTACCATCGTGATATATTGAAACTTCATGTGCATTTTTCTGAGTTTGTGCCTTGGTTGGTCAGAAGGAAATGTGATTGAGATTTGAATGTCGATGTTCTGTTTTACTAGAGTAATGATGCAAGGGAGGAGGTCCCTCCACCCTTCAAATAAGGGAAGAGAAGTTAAATGCTCAAAGTCAACCAAAATACAGGGAATTTTGGGATCCATAGTTGATGGGATGGACAGGTTTGGTTTGAGTTTTGTAGGTGCTCATATGCCTGTTGGTAGTGGAATTTCTTTGAATGTTTTCATGCTCCATGTTCGTTTCCTTTTCATCACTTCACTTCTCTTTTGACTGAAAGAGAGGGCATTTGTTCTTTCCATTAATTGCCATTGAATGTTCTCACAATTCATAAGAGATTGTGACATCAGTATAAGTATCAAATATTGTGTTACAATCGCACTTGTTTTGGCAGCGGATTTAGCGATTGTTTGGCTCTCACTCTCTGTATTGAGAGTGAACCAAGCCAACTTAGGATTGCGTCGCCTACAGTTGAGCAATGTATGCTCAAGCCTCTGGTCTCGTTTTGA

mRNA sequence

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTTTGTGAGAAGTGTGATGGAAAGTGTGTAATCTGTGATTCTTATGTCCGCCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGATCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACACATGTATGTATATGCTGATGAGAACAGTCGTTTGATCAAGGCCAGGGCCGGTGCCATTCACGACGGATTTAGCGATTGTTTGGCTCTCACTCTCTGTATTGAGAGTGAACCAAGCCAACTTAGGATTGCGTCGCCTACAGTTGAGCAATGTATGCTCAAGCCTCTGGTCTCGTTTTGA

Coding sequence (CDS)

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTTTGTGAGAAGTGTGATGGAAAGTGTGTAATCTGTGATTCTTATGTCCGCCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGATCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACACATGTATGTATATGCTGATGAGAACAGTCGTTTGATCAAGGCCAGGGCCGGTGCCATTCACGACGGATTTAGCGATTGTTTGGCTCTCACTCTCTGTATTGAGAGTGAACCAAGCCAACTTAGGATTGCGTCGCCTACAGTTGAGCAATGTATGCTCAAGCCTCTGGTCTCGTTTTGA

Protein sequence

MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADENSRLIKARAGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF

Homology

[Close]

BLAST of Carg07066 vs. NCBI nr
Match: KAG7036993.1 (PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 4.9e-92
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADENSRLIKARAGA 120
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADENSRLIKARAGA
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADENSRLIKARAGA 120

Query: 121 IHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF 161
           IHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF
Sbjct: 121 IHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF 160

[Close]

BLAST of Carg07066 vs. NCBI nr
Match: KAB5520576.1 (hypothetical protein DKX38_024895 [Salix brachista])

HSP 1 Score: 233.8 bits (595), Expect = 1.0e-57
Identity = 111/160 (69.38%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE--HMYVYADENSRLIKAR- 120
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE     +   E   L+ A  
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYELVSKTILVTELKLLLNAMD 120

Query: 121 ---AGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCML 155
               GA+      C+   L +     ++ +AS  +  C++
Sbjct: 121 LNYIGAMSSLLLGCVYQVLLVVLPSVEINVASIAITVCLI 160

[Close]

BLAST of Carg07066 vs. NCBI nr
Match: TKS07855.1 (Zinc finger CCCH domain-containing protein 30 [Populus alba])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHI 103

[Close]

BLAST of Carg07066 vs. NCBI nr
Match: KAG6792993.1 (hypothetical protein POTOM_002161 [Populus tomentosa])

HSP 1 Score: 231.9 bits (590), Expect = 3.9e-57
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM-YVYADENSRLIK 116
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE +  V AD  S  ++
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERLEIVSADITSSCVE 116

[Close]

BLAST of Carg07066 vs. NCBI nr
Match: PPD86829.1 (hypothetical protein GOBAR_DD16226 [Gossypium barbadense])

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-57
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE M
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERM 103

[Close]

BLAST of Carg07066 vs. ExPASy Swiss-Prot
Match: P0DI19 (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana OX=3702 GN=At2g30000 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-59
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Carg07066 vs. ExPASy Swiss-Prot
Match: Q0WMV8 (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana OX=3702 GN=At1g07170 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-59
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Carg07066 vs. ExPASy Swiss-Prot
Match: Q7RTV0 (PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-55
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYE
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYE 101

[Close]

BLAST of Carg07066 vs. ExPASy Swiss-Prot
Match: P83870 (PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-55
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYE
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYE 101

[Close]

BLAST of Carg07066 vs. ExPASy Swiss-Prot
Match: P83871 (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Phf5a PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-55
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYE
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYE 101

[Close]

BLAST of Carg07066 vs. ExPASy TrEMBL
Match: A0A5N5JPF0 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024895 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.0e-58
Identity = 111/160 (69.38%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE--HMYVYADENSRLIKAR- 120
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE     +   E   L+ A  
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYELVSKTILVTELKLLLNAMD 120

Query: 121 ---AGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCML 155
               GA+      C+   L +     ++ +AS  +  C++
Sbjct: 121 LNYIGAMSSLLLGCVYQVLLVVLPSVEINVASIAITVCLI 160

[Close]

BLAST of Carg07066 vs. ExPASy TrEMBL
Match: A0A7N2R2H0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.5e-58
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHL 103

[Close]

BLAST of Carg07066 vs. ExPASy TrEMBL
Match: A0A4U5QH41 (Zinc finger CCCH domain-containing protein 30 OS=Populus alba OX=43335 GN=D5086_0000108950 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.5e-58
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHM 104
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH+
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHI 103

[Close]

BLAST of Carg07066 vs. ExPASy TrEMBL
Match: A0A7N2LD10 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEH 102

[Close]

BLAST of Carg07066 vs. ExPASy TrEMBL
Match: M8CB49 (Zinc finger CCCH domain-containing protein 30 OS=Aegilops tauschii OX=37682 GN=F775_17359 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.5e-57
Identity = 113/162 (69.75%), Postives = 126/162 (77.78%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADENSRLIKARAGA 120
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE          +  + R GA
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER---------KKCEMRGGA 120

Query: 121 I---HDGFSDCLALTLC-IESEPSQLR--IASPTVEQCMLKP 157
           +   +D  +    +++C +ES    +R  I+  +  Q  L+P
Sbjct: 121 VCKTNDDDASRFCVSMCVVESLHFMVRLFISEDSPSQAGLRP 153

[Close]

BLAST of Carg07066 vs. TAIR 10
Match: AT1G07170.1 (PHF5-like protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Carg07066 vs. TAIR 10
Match: AT1G07170.2 (PHF5-like protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Carg07066 vs. TAIR 10
Match: AT1G07170.3 (PHF5-like protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

[Close]

BLAST of Carg07066 vs. TAIR 10
Match: AT2G30000.1 (PHF5-like protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-60
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 102
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYE 101

The following BLAST results are available for this feature:

BLAST of Carg07066 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036993.1	4.9e-92	100.00	PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma su...	[more]
KAB5520576.1	1.0e-57	69.38	hypothetical protein DKX38_024895 [Salix brachista]	[more]
TKS07855.1	1.8e-57	99.03	Zinc finger CCCH domain-containing protein 30 [Populus alba]	[more]
KAG6792993.1	3.9e-57	90.52	hypothetical protein POTOM_002161 [Populus tomentosa]	[more]
PPD86829.1	5.1e-57	99.03	hypothetical protein GOBAR_DD16226 [Gossypium barbadense]	[more]

BLAST of Carg07066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DI19	3.3e-59	99.01	PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q0WMV8	3.3e-59	99.01	PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q7RTV0	3.8e-55	91.09	PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE...	[more]
P83870	3.8e-55	91.09	PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a P...	[more]
P83871	3.8e-55	91.09	PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Ph...	[more]

BLAST of Carg07066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5JPF0	5.0e-58	69.38	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024895 PE=3 SV=1	[more]
A0A7N2R2H0	6.5e-58	99.03	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A4U5QH41	8.5e-58	99.03	Zinc finger CCCH domain-containing protein 30 OS=Populus alba OX=43335 GN=D5086_...	[more]
A0A7N2LD10	1.1e-57	100.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
M8CB49	5.5e-57	69.75	Zinc finger CCCH domain-containing protein 30 OS=Aegilops tauschii OX=37682 GN=F...	[more]

BLAST of Carg07066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07170.1	2.4e-60	99.01	PHF5-like protein	[more]
AT1G07170.2	2.4e-60	99.01	PHF5-like protein	[more]
AT1G07170.3	2.4e-60	99.01	PHF5-like protein	[more]
AT2G30000.1	2.4e-60	99.01	PHF5-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005345	PHF5-like	PFAM	PF03660	PHF5	coord: 1..102 e-value: 6.4E-48 score: 161.3
IPR005345	PHF5-like	PANTHER	PTHR13120	PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5A	coord: 1..102
None	No IPR available	PANTHER	PTHR13120:SF5	BNAC03G71910D PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07066-RA	Carg07066-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0036402	proteasome-activating activity