Carg07057 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07057
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein CHUP1, chloroplastic
Location	Carg_Chr01: 3651136 .. 3653488 (+)
RNA-Seq Expression	Carg07057
Synteny	Carg07057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATGAAGAATTGGCCATGGAGATCCACGCCTTGAAAAGGGAATTGGAAATTTCACTGCAAAAATCGAATTTTCTTGAGAAAGAAAATCAAGAACTCAAACAAGAATTGGCTCGATTCAAATCCCACGTTCAGTCTCTGAAAGTTCATAATAATGACAGGAAATCCATTCTTTGGAAGAAATTTCACAATTCCATGGATGTCGCCGGAAATGACTCCACGCCGCAGAGTCCGCCGGCGACTGACAAATGGGAGACTACCAGAACACAGAAACAGAGTAATTGGGCTGTTGTGAAAGAGAACCAGAGAATGGCGGCGGCGGCACCGACCCCGGCTCCTCCACCGCCGCCGCCACTTCCGACGAAGCTGCTCGGGGGGTCTAAGGCAGTGCGGCGAGTCCCGGAAGTGTTGGAGCTGTACCGTTTAGTGACGAAAAGGGATGCCCAGAAGGAAAATAAGGCCGCAAACGGAGGATTTCCAGCGGTGGCGTTCACCAAAAACATGATCGGCGAAATCGAAAACCGATCAGCCTATCTCTCAGCGGTACGTATGTAGGCTTTTCAAAATTTTGTCCAATTTTAATTAATTTAAAGTAGAATTAAGAACTAATCAAATTAAAAACTATTTTTGTATTTAATAAGTAAAAGTACCCATACCCAATTTTAATTCGTAGCAAGTTTATATCGTTAAATTAGAGATATAATTGTAAGAACATGGAAAGTTTTGGATGAGAGACGAAAAAGGCAAGTGAATGAAAGCATGGGCACAGATAAAATCGGAGGTGGAGACCCATGGGGAGTTTGTGAACCGGCTGATCAGAGAAGTGGAGGCGGCAGCGCCAAGAGACATAGCGGAGGTGGAGAGGTTCGTGAAGTGGCTAGACGGGGAGCTGGCATCGCTCGTGGACGAGAGGGCGGTGCTCAAGCACTTCCCACGGTGGCCGGAGGGGAAGGCAGACGCACTGCGGGAGGCAGCGTTCAGCTACAAGGATCTGAAGAGCTTGGAAGGTGAAGTGTGTTCGTTTAGAGAGAATCCAAAGGAGGAGACGAATGCAATGTTGAAGAGGGCTCAGGCCTTGCAAGACAGGCGAGCATGTACAATCTGTTGTATTTCATGTTTCTAATAAGGTGAAGCAGAGTTGGGAAGTGACTGATGAACTAGAGAAATGCTTGGAACTGTGCAGGTTGGAGCAGAGCGTGAGCAATGTGGAGAGGACGAGGGAGTTCAACTGTAAGAAGTACAACAAGTTTCAAATCCCTTGCCAATGGATGCTGGACTCTGGCTTGCCAGCCCAGGTAGTTAGCTCTTAATCAAACTTAGCTCTAAAACCAAAAACCATGAACACCCACTTCCCTCCATTTAGAACAAAAGGAAAGGTTGAAGATTTTCTATAAAGGTTGAAGATCTTTAGGGAAGGAGTCCTACTAACTAATTAAAAGATTCTTCATGGGTTTATAATTATTAAGAATCACTATCTTCATTGGTACGAGGACTTTTTTTGATAAACTAAAAGCAAAACCATGAAAACTTATGTTCAATGAAGACAATATCATACCATTACAAAGATTCATGATTTTTAACATGGTATTAGAGTCATGCCCTTAGTTTTGTCATATCAATAGAATCCTCAAATTTCGAACACAAAGAAGTTGTGAGCTTCAAAAGTGTAGTCAACAGTGACTAAGTGTCGAACAAAAAGTATACTTTGTTCAAAGGATCAAGAGGAGTTGAGCCTTGATTAAGGGGAGGTTGTTTGAGGACTCCATAGGCTTAAGGGAGACTCTATAGTGTACTTTGTTCGAGGTAATTGTTGAAGATGGTTGGGAGGGAAGTCCCACGTCGATTAATTAAGGGGTTGATTATGGGTTTATACGTAAGAACCCCTATCTCCATTGATATGAGGCCTTTTAAGTAAAACCAAAAGTAAAATCATAAGTTTATGCTAAAAGTGGACAATATCATACTATTGTGGAGGTAACCACAAACCTCCCCAAACAAAGGTCGCACCTTCTAGACTAGAGAACATAAAAATGAAAAACTGTAAAACACAATTGGTTGCAGATGAAGCTGAGCTCATTGAGGCTAGTGAAGGAATGCATGCGGAGGATAACAAAAGAGGTACAATTGAACGAAACCCCACAAACAGAAAACCTTTTTCTTCAAGGGGTTCGCTTCGCTTACAGGGTGCACCAGGTAAGCTACAAAGACGTACTATCTAATCACATTTTATGATGCTCAACAATAACACTCGGAATCTTTTCAGTATGCAGGTGGTTTTGATTCGGAAGCTATAGTGGCTTTTGAAGGAATGAAGCAAGTTGGGCTGCAGCTTAATCAAAGAAAATAG

mRNA sequence

ATGGAAGAAGATGAAGAATTGGCCATGGAGATCCACGCCTTGAAAAGGGAATTGGAAATTTCACTGCAAAAATCGAATTTTCTTGAGAAAGAAAATCAAGAACTCAAACAAGAATTGGCTCGATTCAAATCCCACGTTCAGTCTCTGAAAGTTCATAATAATGACAGGAAATCCATTCTTTGGAAGAAATTTCACAATTCCATGGATGTCGCCGGAAATGACTCCACGCCGCAGAGTCCGCCGGCGACTGACAAATGGGAGACTACCAGAACACAGAAACAGAGTAATTGGGCTGTTGTGAAAGAGAACCAGAGAATGGCGGCGGCGGCACCGACCCCGGCTCCTCCACCGCCGCCGCCACTTCCGACGAAGCTGCTCGGGGGGTCTAAGGCAGTGCGGCGAGTCCCGGAAGTGTTGGAGCTGTACCGTTTAGTGACGAAAAGGGATGCCCAGAAGGAAAATAAGGCCGCAAACGGAGGATTTCCAGCGGTGGCGTTCACCAAAAACATGATCGGCGAAATCGAAAACCGATCAGCCTATCTCTCAGCGATAAAATCGGAGGTGGAGACCCATGGGGAGTTTGTGAACCGGCTGATCAGAGAAGTGGAGGCGGCAGCGCCAAGAGACATAGCGGAGGTGGAGAGGTTCGTGAAGTGGCTAGACGGGGAGCTGGCATCGCTCGTGGACGAGAGGGCGGTGCTCAAGCACTTCCCACGGTGGCCGGAGGGGAAGGCAGACGCACTGCGGGAGGCAGCGTTCAGCTACAAGGATCTGAAGAGCTTGGAAGGCGAGCATGTACAATCTGTTGTATTTCATGTTTCTAATAAGGTGAAGCAGAGTTGGGAAGTGACTGATGAACTAGAGAAATGCTTGGAACTGTGCAGGTTGGAGCAGAGCGTGAGCAATGTGGAGAGGACGAGGGAGTTCAACTGTAAGAAGTACAACAAGTTTCAAATCCCTTGCCAATGGATGCTGGACTCTGGCTTGCCAGCCCAGATGAAGCTGAGCTCATTGAGGCTAGTGAAGGAATGCATGCGGAGGATAACAAAAGAGGTACAATTGAACGAAACCCCACAAACAGAAAACCTTTTTCTTCAAGGGGTTCGCTTCGCTTACAGGGTGCACCAGTATGCAGGTGGTTTTGATTCGGAAGCTATAGTGGCTTTTGAAGGAATGAAGCAAGTTGGGCTGCAGCTTAATCAAAGAAAATAG

Coding sequence (CDS)

ATGGAAGAAGATGAAGAATTGGCCATGGAGATCCACGCCTTGAAAAGGGAATTGGAAATTTCACTGCAAAAATCGAATTTTCTTGAGAAAGAAAATCAAGAACTCAAACAAGAATTGGCTCGATTCAAATCCCACGTTCAGTCTCTGAAAGTTCATAATAATGACAGGAAATCCATTCTTTGGAAGAAATTTCACAATTCCATGGATGTCGCCGGAAATGACTCCACGCCGCAGAGTCCGCCGGCGACTGACAAATGGGAGACTACCAGAACACAGAAACAGAGTAATTGGGCTGTTGTGAAAGAGAACCAGAGAATGGCGGCGGCGGCACCGACCCCGGCTCCTCCACCGCCGCCGCCACTTCCGACGAAGCTGCTCGGGGGGTCTAAGGCAGTGCGGCGAGTCCCGGAAGTGTTGGAGCTGTACCGTTTAGTGACGAAAAGGGATGCCCAGAAGGAAAATAAGGCCGCAAACGGAGGATTTCCAGCGGTGGCGTTCACCAAAAACATGATCGGCGAAATCGAAAACCGATCAGCCTATCTCTCAGCGATAAAATCGGAGGTGGAGACCCATGGGGAGTTTGTGAACCGGCTGATCAGAGAAGTGGAGGCGGCAGCGCCAAGAGACATAGCGGAGGTGGAGAGGTTCGTGAAGTGGCTAGACGGGGAGCTGGCATCGCTCGTGGACGAGAGGGCGGTGCTCAAGCACTTCCCACGGTGGCCGGAGGGGAAGGCAGACGCACTGCGGGAGGCAGCGTTCAGCTACAAGGATCTGAAGAGCTTGGAAGGCGAGCATGTACAATCTGTTGTATTTCATGTTTCTAATAAGGTGAAGCAGAGTTGGGAAGTGACTGATGAACTAGAGAAATGCTTGGAACTGTGCAGGTTGGAGCAGAGCGTGAGCAATGTGGAGAGGACGAGGGAGTTCAACTGTAAGAAGTACAACAAGTTTCAAATCCCTTGCCAATGGATGCTGGACTCTGGCTTGCCAGCCCAGATGAAGCTGAGCTCATTGAGGCTAGTGAAGGAATGCATGCGGAGGATAACAAAAGAGGTACAATTGAACGAAACCCCACAAACAGAAAACCTTTTTCTTCAAGGGGTTCGCTTCGCTTACAGGGTGCACCAGTATGCAGGTGGTTTTGATTCGGAAGCTATAGTGGCTTTTGAAGGAATGAAGCAAGTTGGGCTGCAGCTTAATCAAAGAAAATAG

Protein sequence

MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSILWKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK

Homology

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BLAST of Carg07057 vs. NCBI nr
Match: KAG7037002.1 (Protein CHUP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 790.4 bits (2040), Expect = 7.2e-225
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL
Sbjct: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60

Query: 61  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 120
           WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP
Sbjct: 61  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 120

Query: 121 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 180
           LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY
Sbjct: 121 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 180

Query: 181 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 240
           LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW
Sbjct: 181 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 240

Query: 241 PEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSV 300
           PEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSV
Sbjct: 241 PEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSV 300

Query: 301 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT 360
           SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT
Sbjct: 301 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT 360

Query: 361 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK
Sbjct: 361 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 403

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BLAST of Carg07057 vs. NCBI nr
Match: KAG6607325.1 (Protein CHUP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 716.8 bits (1849), Expect = 1.0e-202
Identity = 376/403 (93.30%), Postives = 380/403 (94.29%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL
Sbjct: 3   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 62

Query: 61  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 120
           WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP
Sbjct: 63  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 122

Query: 121 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 180
           LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY
Sbjct: 123 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 182

Query: 181 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 240
           LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW
Sbjct: 183 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 242

Query: 241 PEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSV 300
           PEGKADALREAAFSYKDLKSLEGE     V       K+      +  + L+  RLEQSV
Sbjct: 243 PEGKADALREAAFSYKDLKSLEGE-----VCSFRENPKEETNAMLKRAQALQ-DRLEQSV 302

Query: 301 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT 360
           SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT
Sbjct: 303 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT 362

Query: 361 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK
Sbjct: 363 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 399

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BLAST of Carg07057 vs. NCBI nr
Match: XP_022948306.1 (protein CHUP1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 707.2 bits (1824), Expect = 8.0e-200
Identity = 371/403 (92.06%), Postives = 376/403 (93.30%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEIHALKRELEISLQKS FLEKENQELKQELARFKSH+ SLK HNNDRKSIL
Sbjct: 3   MEEDEELAMEIHALKRELEISLQKSIFLEKENQELKQELARFKSHIHSLKAHNNDRKSIL 62

Query: 61  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 120
           WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP
Sbjct: 63  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 122

Query: 121 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 180
           LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY
Sbjct: 123 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 182

Query: 181 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 240
           LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW
Sbjct: 183 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 242

Query: 241 PEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSV 300
           PEGKADALREAAFSYKDLKSLEGE     V       K+      +  + L+  RLEQSV
Sbjct: 243 PEGKADALREAAFSYKDLKSLEGE-----VCSFRENPKEETNAMLKRAQALQ-DRLEQSV 302

Query: 301 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT 360
           SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKE QLNETPQT
Sbjct: 303 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEKQLNETPQT 362

Query: 361 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK
Sbjct: 363 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 399

[Close]

BLAST of Carg07057 vs. NCBI nr
Match: XP_023523072.1 (protein CHUP1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523080.1 protein CHUP1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 698.4 bits (1801), Expect = 3.7e-197
Identity = 368/405 (90.86%), Postives = 375/405 (92.59%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEI ALKRELEISLQKSNFLEKENQELKQELARFKSH+QSLK HNNDRKSIL
Sbjct: 3   MEEDEELAMEIDALKRELEISLQKSNFLEKENQELKQELARFKSHIQSLKAHNNDRKSIL 62

Query: 61  WKKFHNSMD--VAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP 120
           WKKFHNSMD  VAG DS+PQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP
Sbjct: 63  WKKFHNSMDVAVAGTDSSPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP 122

Query: 121 PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRS 180
           PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRS
Sbjct: 123 PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRS 182

Query: 181 AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP 240
           AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGEL SLVDERAVLKHFP
Sbjct: 183 AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELGSLVDERAVLKHFP 242

Query: 241 RWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQ 300
           RWPEGKADALREAAFSYKDLKSLE E     V       K+      +  + L+  RLEQ
Sbjct: 243 RWPEGKADALREAAFSYKDLKSLEAE-----VCSFRENPKEETNAMLKRAQALQ-DRLEQ 302

Query: 301 SVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETP 360
           SVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKE+QLNETP
Sbjct: 303 SVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEIQLNETP 362

Query: 361 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK
Sbjct: 363 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 401

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BLAST of Carg07057 vs. NCBI nr
Match: XP_022998607.1 (protein CHUP1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 689.5 bits (1778), Expect = 1.7e-194
Identity = 365/405 (90.12%), Postives = 373/405 (92.10%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEI ALKRELEISLQKSNFLEKENQELKQELARFKSH+QSLK HNNDRKSIL
Sbjct: 3   MEEDEELAMEIDALKRELEISLQKSNFLEKENQELKQELARFKSHLQSLKPHNNDRKSIL 62

Query: 61  WKKFHNSMD--VAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP 120
           WKKFHNSMD  VAG DS+PQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP
Sbjct: 63  WKKFHNSMDVAVAGTDSSPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP 122

Query: 121 PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRS 180
           PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKA NGGFPAVAFTKNMIGEIENRS
Sbjct: 123 PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKATNGGFPAVAFTKNMIGEIENRS 182

Query: 181 AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP 240
           AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP
Sbjct: 183 AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP 242

Query: 241 RWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQ 300
           RWPEGKADALREAAFSYKDLKSLE E     V       K+      +  + L+  RLEQ
Sbjct: 243 RWPEGKADALREAAFSYKDLKSLEAE-----VCSFRENPKEETNAMLKRAQALQ-DRLEQ 302

Query: 301 SVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETP 360
           SVSNVERTREFNC KYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKE+QLNETP
Sbjct: 303 SVSNVERTREFNCNKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKELQLNETP 362

Query: 361 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGL L+QRK
Sbjct: 363 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLLLSQRK 401

[Close]

BLAST of Carg07057 vs. ExPASy Swiss-Prot
Match: Q9LI74 (Protein CHUP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHUP1 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.2e-59
Identity = 136/293 (46.42%), Postives = 188/293 (64.16%), Query Frame = 0


Query: 111 PTPAPPPPPPLPTKL---LGGSKAVRRVPEVLELYRLVTKRDAQKE---NKAANGGFPAV 170
           P   PPPPPP P  L    GG   V R PE++E Y+ + KR+++KE   +  ++G   + 
Sbjct: 694 PGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSS 753

Query: 171 AFTKNMIGEIENRSAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGEL 230
           A   NMIGEIENRS +L A+K++VET G+FV  L  EV A++  DI ++  FV WLD EL
Sbjct: 754 AARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEEL 813

Query: 231 ASLVDERAVLKHFPRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVT 290
           + LVDERAVLKHF  WPEGKADALREAAF Y+DL  LE    + V   V +         
Sbjct: 814 SFLVDERAVLKHFD-WPEGKADALREAAFEYQDLMKLE----KQVTSFVDDPNLSCEPAL 873

Query: 291 DELEKCLELCRLEQSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKEC 350
            ++ K LE  ++EQSV  + RTR+    +Y +F IP  W+ D+G+  ++KLSS++L K+ 
Sbjct: 874 KKMYKLLE--KVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKY 933

Query: 351 MRRITKEVQ----LNETPQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMK 394
           M+R+  E+      ++ P  E L LQGVRFA+RVHQ+AGGFD+E++ AFE ++
Sbjct: 934 MKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 979

[Close]

BLAST of Carg07057 vs. ExPASy TrEMBL
Match: A0A6J1G8X0 (protein CHUP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452021 PE=4 SV=1)

HSP 1 Score: 707.2 bits (1824), Expect = 3.9e-200
Identity = 371/403 (92.06%), Postives = 376/403 (93.30%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEIHALKRELEISLQKS FLEKENQELKQELARFKSH+ SLK HNNDRKSIL
Sbjct: 3   MEEDEELAMEIHALKRELEISLQKSIFLEKENQELKQELARFKSHIHSLKAHNNDRKSIL 62

Query: 61  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 120
           WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP
Sbjct: 63  WKKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPP 122

Query: 121 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 180
           LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY
Sbjct: 123 LPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAY 182

Query: 181 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 240
           LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW
Sbjct: 183 LSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRW 242

Query: 241 PEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSV 300
           PEGKADALREAAFSYKDLKSLEGE     V       K+      +  + L+  RLEQSV
Sbjct: 243 PEGKADALREAAFSYKDLKSLEGE-----VCSFRENPKEETNAMLKRAQALQ-DRLEQSV 302

Query: 301 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQT 360
           SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKE QLNETPQT
Sbjct: 303 SNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEKQLNETPQT 362

Query: 361 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK
Sbjct: 363 ENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 399

[Close]

BLAST of Carg07057 vs. ExPASy TrEMBL
Match: A0A6J1K8G4 (protein CHUP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493194 PE=4 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 8.4e-195
Identity = 365/405 (90.12%), Postives = 373/405 (92.10%), Query Frame = 0


Query: 1   MEEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSIL 60
           MEEDEELAMEI ALKRELEISLQKSNFLEKENQELKQELARFKSH+QSLK HNNDRKSIL
Sbjct: 3   MEEDEELAMEIDALKRELEISLQKSNFLEKENQELKQELARFKSHLQSLKPHNNDRKSIL 62

Query: 61  WKKFHNSMD--VAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP 120
           WKKFHNSMD  VAG DS+PQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP
Sbjct: 63  WKKFHNSMDVAVAGTDSSPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPP 122

Query: 121 PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRS 180
           PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKA NGGFPAVAFTKNMIGEIENRS
Sbjct: 123 PPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKATNGGFPAVAFTKNMIGEIENRS 182

Query: 181 AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP 240
           AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP
Sbjct: 183 AYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFP 242

Query: 241 RWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQ 300
           RWPEGKADALREAAFSYKDLKSLE E     V       K+      +  + L+  RLEQ
Sbjct: 243 RWPEGKADALREAAFSYKDLKSLEAE-----VCSFRENPKEETNAMLKRAQALQ-DRLEQ 302

Query: 301 SVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETP 360
           SVSNVERTREFNC KYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKE+QLNETP
Sbjct: 303 SVSNVERTREFNCNKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKELQLNETP 362

Query: 361 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGL L+QRK
Sbjct: 363 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLLLSQRK 401

[Close]

BLAST of Carg07057 vs. ExPASy TrEMBL
Match: A0A6J1DC83 (protein CHUP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018994 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.4e-149
Identity = 293/405 (72.35%), Postives = 332/405 (81.98%), Query Frame = 0


Query: 2   EEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSILW 61
           EEDEELAMEI +L++EL+I++ KS+FLEKENQEL+QEL R KS +QSLK HNNDRKS+LW
Sbjct: 4   EEDEELAMEITSLRKELQIAVDKSDFLEKENQELRQELGRLKSQIQSLKAHNNDRKSLLW 63

Query: 62  KKFHNSMDVAGNDSTPQSPPATDKWETTRTQ-KQSNWAVVKENQRMAAAAPTPAP-PPPP 121
           KKF+NSMD        +SPPATDK E T++  KQ  W  VKE+QRM   AP PAP PPPP
Sbjct: 64  KKFYNSMDA-------ESPPATDKREATKSSPKQPVWVAVKESQRMPEGAPAPAPAPPPP 123

Query: 122 PLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSA 181
           PLPTKLL GSKAVRRVPEVLELYR +TKRDAQKENKAA+GGFPAVAFTKNMIGEIENRSA
Sbjct: 124 PLPTKLLAGSKAVRRVPEVLELYRSLTKRDAQKENKAAHGGFPAVAFTKNMIGEIENRSA 183

Query: 182 YLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPR 241
           YL+AIKSEVETHGEFVN LI+EVE AAPRDI EVERFV WLD EL SLVDERAVLKHFPR
Sbjct: 184 YLTAIKSEVETHGEFVNWLIKEVEGAAPRDITEVERFVNWLDRELGSLVDERAVLKHFPR 243

Query: 242 WPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQS 301
           WPEGKADALREAAFSY+DLKSLE E     V    +  K+   V  +  + L+  RLEQS
Sbjct: 244 WPEGKADALREAAFSYRDLKSLESE-----VCSFRDNPKEEMGVVLKRAQALQ-DRLEQS 303

Query: 302 VSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQ-LNETP 361
           VSNVE+TREF+C KY  F+IPC+WM +SGL  QMKLSSLRL KE MRRIT+E+Q ++ T 
Sbjct: 304 VSNVEKTREFSCNKYRNFRIPCEWMFESGLVGQMKLSSLRLAKEYMRRITRELQSIDNTQ 363

Query: 362 QTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           Q +NL LQGVRFAYRVHQYAGGFDS+AI AFEG+K+VGL  +QRK
Sbjct: 364 QADNLLLQGVRFAYRVHQYAGGFDSDAIAAFEGLKKVGLS-SQRK 394

[Close]

BLAST of Carg07057 vs. ExPASy TrEMBL
Match: A0A0A0LVK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532360 PE=4 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 3.1e-149
Identity = 292/406 (71.92%), Postives = 330/406 (81.28%), Query Frame = 0


Query: 2   EEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSILW 61
           EEDE LAMEI+ LK+ELEISLQKS FLEKENQEL+QEL R +S +QS K  NN+RKSILW
Sbjct: 4   EEDEVLAMEINCLKKELEISLQKSIFLEKENQELRQELNRLRSQIQSFKAQNNERKSILW 63

Query: 62  KKFHNSMD--VAGNDSTPQSPP--ATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPP 121
           KKFH+S+D  VAG DS P SP   A DK E+T++ KQS+W  VKE+ RM     +P PPP
Sbjct: 64  KKFHSSIDISVAGADSPPLSPATVAGDKRESTKSPKQSSWDDVKESHRMTGVPASPPPPP 123

Query: 122 PPPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENR 181
           PPPLPTKLLGGSKAVRRVPEVLELYR +TKRDAQKENK A+GG PAVAFTKNMIGEIENR
Sbjct: 124 PPPLPTKLLGGSKAVRRVPEVLELYRTLTKRDAQKENKVAHGGAPAVAFTKNMIGEIENR 183

Query: 182 SAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHF 241
           SAYLSAIKSEVETHG+FVN LI+EVE  APRDI+EVERFVKWLDG+LASLVDERAVLK+F
Sbjct: 184 SAYLSAIKSEVETHGDFVNWLIKEVETIAPRDISEVERFVKWLDGKLASLVDERAVLKYF 243

Query: 242 PRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLE 301
           PRWPE KADALREAAFSY+DLK LE     S V    +  K+   V  +  + L+  R+E
Sbjct: 244 PRWPEAKADALREAAFSYRDLKGLE-----SKVCMFRDNPKEEMNVVLKRAQALQ-DRVE 303

Query: 302 QSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNET 361
           QSVSN+ERTREFNC+KY  FQIPCQWM DS LP Q+K+S+LRL KE M RIT+E+Q  ET
Sbjct: 304 QSVSNMERTREFNCRKYQAFQIPCQWMFDSALPTQIKMSTLRLAKEYMIRITRELQSTET 363

Query: 362 PQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
           PQ ENLFLQG RFAYRVHQYAGGFDSE I AFEG+K+ GL  +QRK
Sbjct: 364 PQRENLFLQGARFAYRVHQYAGGFDSETIEAFEGLKKAGLS-SQRK 402

[Close]

BLAST of Carg07057 vs. ExPASy TrEMBL
Match: A0A1S3C4V9 (protein CHUP1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497059 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 2.5e-146
Identity = 291/406 (71.67%), Postives = 327/406 (80.54%), Query Frame = 0


Query: 2   EEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSILW 61
           E+DEELAMEI  LK++LEISLQKS FLE+ENQEL+ EL R KS +QSLK  NN+RKSILW
Sbjct: 4   EKDEELAMEIDCLKKDLEISLQKSIFLERENQELRLELNRLKSQIQSLKALNNERKSILW 63

Query: 62  KKFHNSMD--VAGNDSTPQSP--PATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPP 121
           KKFH+SMD  VAG DS P +P   A DK E T+  KQS+W  VKE+QRM A   +  PPP
Sbjct: 64  KKFHSSMDMAVAGADSPPLNPATAAGDKREVTKFPKQSSWDDVKESQRMTAVPASAPPPP 123

Query: 122 PPPLPTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENR 181
           PPPLP KLLGGSKAVRRVPEVL+LYR +TKRDAQKENK A+GG P VAFTKNMIGEIENR
Sbjct: 124 PPPLPKKLLGGSKAVRRVPEVLDLYRTLTKRDAQKENKVAHGGAPVVAFTKNMIGEIENR 183

Query: 182 SAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHF 241
           SAYLSAIKSEVETHGEFVN LI+EVE  APRDI+E E+FVKWLD +LASLVDERAVLKHF
Sbjct: 184 SAYLSAIKSEVETHGEFVNWLIKEVEMIAPRDISEAEKFVKWLDVKLASLVDERAVLKHF 243

Query: 242 PRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLE 301
           PRWPE KADALREAAFSY+DLKSLE     S V    +  K+   V  +  + L+  R+E
Sbjct: 244 PRWPEAKADALREAAFSYRDLKSLE-----SKVCMFRDNPKEEMNVVLKRAQALQ-DRVE 303

Query: 302 QSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNET 361
           QSVSN+ERTREFNCKKY  FQIPCQWM DS LP Q+KLS+LRL KE M RIT+E++  ET
Sbjct: 304 QSVSNMERTREFNCKKYQAFQIPCQWMFDSALPTQIKLSTLRLAKEYMIRITRELRSTET 363

Query: 362 PQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQVGLQLNQRK 404
            Q ENLFLQGVRFAYRVHQYAGGFDSEAI AFEG+K+ GL  +QRK
Sbjct: 364 SQAENLFLQGVRFAYRVHQYAGGFDSEAIEAFEGLKKAGLS-SQRK 402

[Close]

BLAST of Carg07057 vs. TAIR 10
Match: AT1G07120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 323.9 bits (829), Expect = 1.8e-88
Identity = 185/394 (46.95%), Postives = 256/394 (64.97%), Query Frame = 0


Query: 2   EEDEELAMEIHALKRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSILW 61
           E+D +L      L +EL+  L +++ LEKEN EL+QE+AR ++ V +LK H N+RKS+LW
Sbjct: 6   EDDSDLL----RLVKELQAYLVRNDKLEKENHELRQEVARLRAQVSNLKSHENERKSMLW 65

Query: 62  KKFHNSMDVAGNDSTPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPPL 121
           KK  +S D +  D +    P + K   T+ Q+  N         +   +    PPPPPPL
Sbjct: 66  KKLQSSYDGSNTDGSNLKAPESVK-SNTKGQEVRN---PNPKPTIQGQSTATKPPPPPPL 125

Query: 122 PTKLLGGSKAVRRVPEVLELYRLVTKRDAQKENKAANGGFPAVAFTKNMIGEIENRSAYL 181
           P+K   G ++VRR PEV+E YR +TKR++   NK    G  + AF +NMIGEIENRS YL
Sbjct: 126 PSKRTLGKRSVRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFNRNMIGEIENRSKYL 185

Query: 182 SAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRWP 241
           S IKS+ + H + ++ LI +VEAA   DI+EVE FVKW+D EL+SLVDERAVLKHFP+WP
Sbjct: 186 SDIKSDTDRHRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLVDERAVLKHFPKWP 245

Query: 242 EGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSVS 301
           E K D+LREAA +YK  K+L G  + S   +  + + Q+ +    L+      RLE+SV+
Sbjct: 246 ERKVDSLREAACNYKRPKNL-GNEILSFKDNPKDSLTQALQRIQSLQD-----RLEESVN 305

Query: 302 NVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNETPQTE 361
           N E+ R+   K+Y  FQIP +WMLD+GL  Q+K SSLRL +E M+RI KE++ N + +  
Sbjct: 306 NTEKMRDSTGKRYKDFQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIAKELESNGSGKEG 365

Query: 362 NLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMKQV 396
           NL LQGVRFAY +HQ+AGGFD E +  F  +K++
Sbjct: 366 NLMLQGVRFAYTIHQFAGGFDGETLSIFHELKKI 385

[Close]

BLAST of Carg07057 vs. TAIR 10
Match: AT4G18570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 233.0 bits (593), Expect = 4.1e-61
Identity = 156/388 (40.21%), Postives = 214/388 (55.15%), Query Frame = 0


Query: 15  KRELEISLQKSNFLEKENQELKQELARFKSHVQSLKVHNNDRKSILWKKFHNSMDVAGND 74
           K E+E   + SN    E       L+  +S V  +      R   L     N  D     
Sbjct: 251 KDEIESYSRSSN---SEELTESSSLSTVRSRVPRVPKPPPKRSISLGDSTENRADPPPQK 310

Query: 75  STPQSPPATDKWETTRTQKQSNWAVVKENQRMAAAAPTPAPPPPPPLPTKLLGGSKAVRR 134
           S P  PP                 ++++     + +  P PPPPPP P  L   S  VRR
Sbjct: 311 SIPPPPPPPPP------------PLLQQPPPPPSVSKAPPPPPPPPPPKSLSIASAKVRR 370

Query: 135 VPEVLELYRLVTKRDAQKENKAANGGFPAVA-------FTKNMIGEIENRSAYLSAIKSE 194
           VPEV+E Y  + +RD+    + + GG  A A         ++MIGEIENRS YL AIK++
Sbjct: 371 VPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRSVYLLAIKTD 430

Query: 195 VETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGELASLVDERAVLKHFPRWPEGKADA 254
           VET G+F+  LI+EV  AA  DI +V  FVKWLD EL+ LVDERAVLKHF  WPE KADA
Sbjct: 431 VETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHF-EWPEQKADA 490

Query: 255 LREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVTDELEKCLELCRLEQSVSNVERTR 314
           LREAAF Y DLK L  E  +       +  + S     +++   E  +LE  V ++ R R
Sbjct: 491 LREAAFCYFDLKKLISEASR----FREDPRQSSSSALKKMQALFE--KLEHGVYSLSRMR 550

Query: 315 EFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKECMRRITKEVQLNE--TPQTENLFL 374
           E    K+  FQIP  WML++G+ +Q+KL+S++L  + M+R++ E++  E   P+ E L +
Sbjct: 551 ESAATKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGGGPEEEELIV 610

Query: 375 QGVRFAYRVHQYAGGFDSEAIVAFEGMK 394
           QGVRFA+RVHQ+AGGFD+E + AFE ++
Sbjct: 611 QGVRFAFRVHQFAGGFDAETMKAFEELR 616

[Close]

BLAST of Carg07057 vs. TAIR 10
Match: AT3G25690.1 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-60
Identity = 136/293 (46.42%), Postives = 188/293 (64.16%), Query Frame = 0


Query: 111 PTPAPPPPPPLPTKL---LGGSKAVRRVPEVLELYRLVTKRDAQKE---NKAANGGFPAV 170
           P   PPPPPP P  L    GG   V R PE++E Y+ + KR+++KE   +  ++G   + 
Sbjct: 694 PGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSS 753

Query: 171 AFTKNMIGEIENRSAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGEL 230
           A   NMIGEIENRS +L A+K++VET G+FV  L  EV A++  DI ++  FV WLD EL
Sbjct: 754 AARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEEL 813

Query: 231 ASLVDERAVLKHFPRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVT 290
           + LVDERAVLKHF  WPEGKADALREAAF Y+DL  LE    + V   V +         
Sbjct: 814 SFLVDERAVLKHFD-WPEGKADALREAAFEYQDLMKLE----KQVTSFVDDPNLSCEPAL 873

Query: 291 DELEKCLELCRLEQSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKEC 350
            ++ K LE  ++EQSV  + RTR+    +Y +F IP  W+ D+G+  ++KLSS++L K+ 
Sbjct: 874 KKMYKLLE--KVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKY 933

Query: 351 MRRITKEVQ----LNETPQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMK 394
           M+R+  E+      ++ P  E L LQGVRFA+RVHQ+AGGFD+E++ AFE ++
Sbjct: 934 MKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 979

[Close]

BLAST of Carg07057 vs. TAIR 10
Match: AT3G25690.2 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-60
Identity = 136/293 (46.42%), Postives = 188/293 (64.16%), Query Frame = 0


Query: 111 PTPAPPPPPPLPTKL---LGGSKAVRRVPEVLELYRLVTKRDAQKE---NKAANGGFPAV 170
           P   PPPPPP P  L    GG   V R PE++E Y+ + KR+++KE   +  ++G   + 
Sbjct: 694 PGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSS 753

Query: 171 AFTKNMIGEIENRSAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGEL 230
           A   NMIGEIENRS +L A+K++VET G+FV  L  EV A++  DI ++  FV WLD EL
Sbjct: 754 AARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEEL 813

Query: 231 ASLVDERAVLKHFPRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVT 290
           + LVDERAVLKHF  WPEGKADALREAAF Y+DL  LE    + V   V +         
Sbjct: 814 SFLVDERAVLKHFD-WPEGKADALREAAFEYQDLMKLE----KQVTSFVDDPNLSCEPAL 873

Query: 291 DELEKCLELCRLEQSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKEC 350
            ++ K LE  ++EQSV  + RTR+    +Y +F IP  W+ D+G+  ++KLSS++L K+ 
Sbjct: 874 KKMYKLLE--KVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKY 933

Query: 351 MRRITKEVQ----LNETPQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMK 394
           M+R+  E+      ++ P  E L LQGVRFA+RVHQ+AGGFD+E++ AFE ++
Sbjct: 934 MKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 979

[Close]

BLAST of Carg07057 vs. TAIR 10
Match: AT3G25690.3 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-60
Identity = 136/293 (46.42%), Postives = 188/293 (64.16%), Query Frame = 0


Query: 111 PTPAPPPPPPLPTKL---LGGSKAVRRVPEVLELYRLVTKRDAQKE---NKAANGGFPAV 170
           P   PPPPPP P  L    GG   V R PE++E Y+ + KR+++KE   +  ++G   + 
Sbjct: 553 PGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSS 612

Query: 171 AFTKNMIGEIENRSAYLSAIKSEVETHGEFVNRLIREVEAAAPRDIAEVERFVKWLDGEL 230
           A   NMIGEIENRS +L A+K++VET G+FV  L  EV A++  DI ++  FV WLD EL
Sbjct: 613 AARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEEL 672

Query: 231 ASLVDERAVLKHFPRWPEGKADALREAAFSYKDLKSLEGEHVQSVVFHVSNKVKQSWEVT 290
           + LVDERAVLKHF  WPEGKADALREAAF Y+DL  LE    + V   V +         
Sbjct: 673 SFLVDERAVLKHFD-WPEGKADALREAAFEYQDLMKLE----KQVTSFVDDPNLSCEPAL 732

Query: 291 DELEKCLELCRLEQSVSNVERTREFNCKKYNKFQIPCQWMLDSGLPAQMKLSSLRLVKEC 350
            ++ K LE  ++EQSV  + RTR+    +Y +F IP  W+ D+G+  ++KLSS++L K+ 
Sbjct: 733 KKMYKLLE--KVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKY 792

Query: 351 MRRITKEVQ----LNETPQTENLFLQGVRFAYRVHQYAGGFDSEAIVAFEGMK 394
           M+R+  E+      ++ P  E L LQGVRFA+RVHQ+AGGFD+E++ AFE ++
Sbjct: 793 MKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 838

The following BLAST results are available for this feature:

BLAST of Carg07057 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037002.1	7.2e-225	100.00	Protein CHUP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6607325.1	1.0e-202	93.30	Protein CHUP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948306.1	8.0e-200	92.06	protein CHUP1, chloroplastic [Cucurbita moschata]	[more]
XP_023523072.1	3.7e-197	90.86	protein CHUP1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235230...	[more]
XP_022998607.1	1.7e-194	90.12	protein CHUP1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg07057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LI74	2.2e-59	46.42	Protein CHUP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHUP1 PE=1 SV=1	[more]

BLAST of Carg07057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8X0	3.9e-200	92.06	protein CHUP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452021 PE=4 ...	[more]
A0A6J1K8G4	8.4e-195	90.12	protein CHUP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493194 PE=4 SV...	[more]
A0A6J1DC83	1.4e-149	72.35	protein CHUP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018994 PE=4...	[more]
A0A0A0LVK7	3.1e-149	71.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532360 PE=4 SV=1	[more]
A0A1S3C4V9	2.5e-146	71.67	protein CHUP1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497059 ...	[more]

BLAST of Carg07057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07120.1	1.8e-88	46.95	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G18570.1	4.1e-61	40.21	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G25690.1	1.6e-60	46.42	Hydroxyproline-rich glycoprotein family protein	[more]
AT3G25690.2	1.6e-60	46.42	Hydroxyproline-rich glycoprotein family protein	[more]
AT3G25690.3	1.6e-60	46.42	Hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..94
None	No IPR available	PANTHER	PTHR31342:SF48	CHUP1-LIKE PROTEIN	coord: 2..396
IPR040265	Protein CHUP1-like	PANTHER	PTHR31342	PROTEIN CHUP1, CHLOROPLASTIC	coord: 2..396

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07057-RA	Carg07057-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
cellular_component	GO:0009707	chloroplast outer membrane