Carg07052 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07052
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SAGA-associated factor 11
Location	Carg_Chr01: 3681282 .. 3684503 (-)
RNA-Seq Expression	Carg07052
Synteny	Carg07052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAATCTTCTTTTTACTTCCTAGTTCTTCCCCTTTATGCAGTCATGTCGGCTCCCAATTAGCTTGGATTTGTAGTCGCTATCCACATCAGTAAGTTCAGCGATTGCTTTCTGCACTTGTCTCCGTTTCCATTGATTTGCCTGATTTCACGAACTTTCTTGTATAATCAATTTTCCAGAAATGCTTGCGTTTGATACTAGTTTGCATGATTTTAGAATGTTAATATATATATTGCTTTACTTGTTTGGTTTGGTGACCTTTACATGTTTGATAATTTAAGAATTTGTTAATCCTTCTACCGGTTCTTGCGTACTTCGATTTCGTCTTTTATTCAATTTCGGTTATTGAATGGAATGATGATTCTATAAATTGGTTTAGTCATTGTGCTGCAACATTTTTCCTGGTTATAATGTTTCCAGGTCTGTATTGAAACTCTTCCTTCTTCTAGATCCATGTCAATGCCTGATGAGGACAATGCATCATCCCAGGTAGCCTTTTCCTATATATTTGTTCTTCTTTTTCTTATTTTTATTTAGCACGTTAGTATATGAATAATGAGAAATGAAGGCAACAGCTACAATGTCTTTGTTTATGTTTATGGTATAGAACCAAAGCCTGATTTAATTGCTGAGATGAAATATGCAAAGACAAGAGTACCATGGTCTAATATCACTGTTATAAACGGTTTACAAGCCTTACAGTCTAACTAGAATAACTGACAAGCAATTAATTAATCTTCACTTAATTAGCCCAATCAGTTCCTAACTAACCAAAAAGAACCTTCCCAACTGGTAAGCTCTATTTCACAGATTTCCCCCACCTCAGTTTGATGATAGTCGACCAAATTGGTTTCTAGATATGAGGAAAAGCACCCGAACTCCATTTTTTTTGTTTTTGTGATTATATCTGCACCAAAGTGTATGTGTCTATGTAAATGGATTAGAATTTCTTTAAAGGGAAAAAAAAAAAAAAAAGATTTCTAATACGTTACTCTTTGCAGTAAATTTTCTTAATTGTCGTTGGCATTTTCCAGAAATAGAATTGTCAAAAATGTGAAGTCTTGTGTGTACAATATATGATATTTCTCCCTTGATTGCTTGGATGAGTGATGTGCGTCTGCTTTTGATAGATCTTATTATGTTAGCAGCGGTCTGTCAACACCTAAACCAACATGTCAAACTCAATGAATTATTTGAAAGCTCTGTCTAACTATTTTCACGTGTGAGAAAAGGCTGGTCTAATGCTAATATAAGCTTAGACATCTATATTTTCTTTAAGAGGTCATAGGTTTGAATTTCTCTACCCTACTTACGATGTCATCAAGGTTTTTAAAAGGATAAAGGTGTGACCTTAAGGCTTTTTCTCTTGAAGAGGCAAGATGTAAGCCTCAAGGCCACAAAAGGGGTAGACCTCAACTTTATTTGAAAACATTATACAAATCCTAAGTTTGTATGATGAACTAGAAATTATATAGAAGTATAAAAAAAAACCACCCCTATAAATAGCAACTTAACCCAAAATTCTAAAAGGATATTTTTAACATGATTACTATTATCAATAATATGATTGACTTGTTCCATAGTTTTTGTCATCTATGTTTTTGAAGCATGAGTAGTAAAAGTAGTAATAATTTATAATGTCACAACTCAAACTTTTATATCTTTTGAAGAATGGGACAAATTAATATTATTCCTCCAATCATTGCATGTGGCATAAAGCCTTTAAGCCTCAATGCATTTTCACGAAGGTGTAAGTCTCTTATGGTCCATAGATGACACAAATCTTGAGGCTATAAGTTAGAGTCTTACCTCAAAGCAACCTTTTATAACATTGAATGTAGTATTCTTAAAAAAGGGCTTGCCGGAGTATGCTTGATGTGTCAAACATGCCATGAAGCACAAGTATGGTAGTAGTGGTATTAGTGATCGCTTTTAACTTCCTTTTTTCAGGACACAGAACTAACAGAACGGGTACTTCTGTTGCTTTCTGCTTATATTTGCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAATGCCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCGGCACAGGCGCGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGAAAAAATCATCCTTCTGTTGCAAGCGAAATATTTGATTGCATGAATTGTGGTCGATCAATCGTGGCTGGGAGATTTGCCCCGCATTTGGAGAAATGCATGGGAAGGGTAACTTTCTACCCCTTAATTGATATATGTTTTGTTCACACATTCTGCTTCTATTTTTTAAATCTCTTTTCACTCTACTCATCAACTGTCTAATCTATACTATAGGGTAGAAAGGCTCGTCTCAAAGTGACAAGAAGTAGTACAGCTACACAGAGCCGGTATTCACGAGGCAGTTCTGTTTCTGCATATTCTCCTTATCCTAATTCCACCAGCACAAATCGCTTACCTAATGGAACATCTAGTCTTGCAGGGGGCGAGTACTCAAACGGTCCATCCGGAGAGCCATGAACAACAGTGCAATGGCTGAGTTATTTCAATTTAGGAAAACATACTGTAATCTGAATGTGCTCGCAGGAATTTAATGATATCTCCTGTCATGTTTTTATTTTACATGACTTCTTTGTATGGGTTATCATTACATGGGAAAAAATATGTTCTGTTTGGAATCTGGATGTATTATGGGTTCATTACTTTTGTCTGTTCCAAATTTTGACGCTGAAGATCTTGTACAGAAGTTCGAAGAAAGGAAGTTAAGTGCGACTCTAATGTCATTTCTTCAACCTTGAAATGTAATTAGAAAATTGAGTTCAATTGGTCAATCTGGATATTATTTCGATGTGGGGATCAATCTTTGATGGCTACCTGTCTAGAACATATATAATTTTTTCAATGTTTCAGATATTGTAAGATTGAGTAGAACGTGAGGATCATTTAAAAGTAGAGTATCTAGCTCCAAGTGTATCAAATATTTCCATTTGGTTCCATAAAACTTGAGTCCTTATCATACTGGATCTTCTGAAAGGGGCCACAAAGATTATAAAGACGGTTGAACTCGTTCTGTGTTCATTGTCTGACATTTCCCAAGATATTCAGCTCTTTTGCTTGTAATTCTTTTAACAATTTTATG

mRNA sequence

GATGAATCTTCTTTTTACTTCCTAGTTCTTCCCCTTTATGCAGTCATGTCGGCTCCCAATTAGCTTGGATTTGTAGTCGCTATCCACATCAGTCTGTATTGAAACTCTTCCTTCTTCTAGATCCATGTCAATGCCTGATGAGGACAATGCATCATCCCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAATGCCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCGGCACAGGCGCGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGAAAAAATCATCCTTCTGTTGCAAGCGAAATATTTGATTGCATGAATTGTGGTCGATCAATCGTGGCTGGGAGATTTGCCCCGCATTTGGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTGACAAGAAGTAGTACAGCTACACAGAGCCGGTATTCACGAGGCAGTTCTGTTTCTGCATATTCTCCTTATCCTAATTCCACCAGCACAAATCGCTTACCTAATGGAACATCTAGTCTTGCAGGGGGCGAGTACTCAAACGGTCCATCCGGAGAGCCATGAACAACAGTGCAATGGCTGAGTTATTTCAATTTAGGAAAACATACTGTAATCTGAATGTGCTCGCAGGAATTTAATGATATCTCCTGTCATGTTTTTATTTTACATGACTTCTTTGTATGGGTTATCATTACATGGGAAAAAATATGTTCTGTTTGGAATCTGGATGTATTATGGGTTCATTACTTTTGTCTGTTCCAAATTTTGACGCTGAAGATCTTGTACAGAAGTTCGAAGAAAGGAAGTTAAGTGCGACTCTAATGTCATTTCTTCAACCTTGAAATGTAATTAGAAAATTGAGTTCAATTGGTCAATCTGGATATTATTTCGATGTGGGGATCAATCTTTGATGGCTACCTGTCTAGAACATATATAATTTTTTCAATGTTTCAGATATTGTAAGATTGAGTAGAACGTGAGGATCATTTAAAAGTAGAGTATCTAGCTCCAAGTGTATCAAATATTTCCATTTGGTTCCATAAAACTTGAGTCCTTATCATACTGGATCTTCTGAAAGGGGCCACAAAGATTATAAAGACGGTTGAACTCGTTCTGTGTTCATTGTCTGACATTTCCCAAGATATTCAGCTCTTTTGCTTGTAATTCTTTTAACAATTTTATG

Coding sequence (CDS)

ATGTCAATGCCTGATGAGGACAATGCATCATCCCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAATGCCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCGGCACAGGCGCGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGAAAAAATCATCCTTCTGTTGCAAGCGAAATATTTGATTGCATGAATTGTGGTCGATCAATCGTGGCTGGGAGATTTGCCCCGCATTTGGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTGACAAGAAGTAGTACAGCTACACAGAGCCGGTATTCACGAGGCAGTTCTGTTTCTGCATATTCTCCTTATCCTAATTCCACCAGCACAAATCGCTTACCTAATGGAACATCTAGTCTTGCAGGGGGCGAGTACTCAAACGGTCCATCCGGAGAGCCATGA

Protein sequence

MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP

Homology

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BLAST of Carg07052 vs. NCBI nr
Match: KAG7037006.1 (Ataxin-7-like protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.0 bits (868), Expect = 2.5e-89
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60
           MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV
Sbjct: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60

Query: 61  RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 61  RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

[Close]

BLAST of Carg07052 vs. NCBI nr
Match: XP_022949027.1 (SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata] >XP_023523179.1 SAGA-associated factor 11 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.4 bits (864), Expect = 7.3e-89
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60
           MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV
Sbjct: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60

Query: 61  RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           RVADSSNSSEANGKYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 61  RVADSSNSSEANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

[Close]

BLAST of Carg07052 vs. NCBI nr
Match: XP_022998744.1 (SAGA-associated factor 11 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 3.1e-87
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60
           MSMPDEDNASSQL+SNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV
Sbjct: 25  MSMPDEDNASSQLASNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 84

Query: 61  RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           R+ADSSNSSEAN KYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 85  RIADSSNSSEANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 144

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYS+GSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 145 RLKVTRSSTATQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 200

[Close]

BLAST of Carg07052 vs. NCBI nr
Match: XP_022949028.1 (SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 11  SQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE 70
           +QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE
Sbjct: 3   AQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE 62

Query: 71  ANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 130
           ANGKYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
Sbjct: 63  ANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 122

Query: 131 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 123 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

[Close]

BLAST of Carg07052 vs. NCBI nr
Match: XP_022998746.1 (SAGA-associated factor 11 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 311.2 bits (796), Expect = 5.6e-81
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 11  SQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE 70
           +QL+SNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVR+ADSSNSSE
Sbjct: 3   AQLASNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRIADSSNSSE 62

Query: 71  ANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 130
           AN KYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
Sbjct: 63  ANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 122

Query: 131 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           TQSRYS+GSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 123 TQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

[Close]

BLAST of Carg07052 vs. ExPASy Swiss-Prot
Match: Q94BV2 (SAGA-associated factor 11 OS=Arabidopsis thaliana OX=3702 GN=SGF11 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.4e-55
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 6   EDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVA 65
           EDN SS  QLSS  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +AR ++A
Sbjct: 5   EDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIA 64

Query: 66  DSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLK 125
           D SN+ E N KYVVDIFG+ HP VASE+F+CMNCGR IVAGRFAPHLEKCMG+GRKAR K
Sbjct: 65  DPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAK 124

Query: 126 VTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSN 171
            TRS+TA Q+R +R S    YSPYPNS S N+L +G+  +AG + SN
Sbjct: 125 TTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASGSPGVAGEDCSN 171

[Close]

BLAST of Carg07052 vs. ExPASy Swiss-Prot
Match: B1PM81 (SAGA-associated factor 11 homolog OS=Musca domestica OX=7370 GN=Sgf11 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-07
Identity = 46/143 (32.17%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 12  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEA 71
           + ++  +  LLD  +V V  E H + + G   NL   +      ++   R+ D  N    
Sbjct: 59  EAANYLYQSLLDDAVVGVFLEIHHLRKTG---NLTAMDGVNEDESETSFRIVDMPN---- 118

Query: 72  NGKYVVDIFGKNHPSVASEIFDCM--NCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSST 131
                 DIFG    S A +  DC   NC R + A RFAPHLEKCMG GR +    +R   
Sbjct: 119 -----FDIFG---ISTAKKPMDCTCPNCDRPVSAARFAPHLEKCMGMGRISSRIASRRLA 178

Query: 132 ATQSRYSRGSSVSAYSPYPNSTS 153
             +S  +  SS S+Y    N+ S
Sbjct: 179 TKESNSASSSSSSSYLQTTNAGS 186

[Close]

BLAST of Carg07052 vs. ExPASy Swiss-Prot
Match: B4KY72 (SAGA-associated factor 11 homolog OS=Drosophila mojavensis OX=7230 GN=Sgf11 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-07
Identity = 44/141 (31.21%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 6   EDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADS 65
           E       ++  F  LLD V+  +  E H + + G    L+   EE   +A++  R+ + 
Sbjct: 42  EPKGLEDAANYLFQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEE---NAESAYRICEM 101

Query: 66  SNSSEANGKYVVDIFGKNHPSVASEIFDCM--NCGRSIVAGRFAPHLEKCMGRGRKARLK 125
            N         +DIFG    S A +  DC   +C R + A RFAPHLEKCMG GR +   
Sbjct: 102 PN---------LDIFG---ISTAKKPMDCTCPHCDRLVAAARFAPHLEKCMGMGRISSRI 161

Query: 126 VTRSSTATQSRYSRGSSVSAY 145
            +R     +   +  SS S Y
Sbjct: 162 ASRRLATKEGASASSSSTSTY 167

[Close]

BLAST of Carg07052 vs. ExPASy Swiss-Prot
Match: A1L209 (Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 43/141 (30.50%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 1   MSMPDEDNASSQ-LSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR 60
           MS+   DN   + L+ + + DL++   + +  E HR  + G    L+E ++E        
Sbjct: 6   MSLSGLDNTKLEALAHDVYSDLVEDACLGLCFEVHRAVKQGY-FFLDETDQE-------- 65

Query: 61  VRVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRK 120
                S    E   +  VDIFG+ +    ++   C NC RSI A RFAPHLEKC+G GR 
Sbjct: 66  -----SMKDFEIVDQPGVDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHLEKCLGMGRN 125

Query: 121 ARLKVTRSSTATQSRYSRGSS 141
           +  ++     A+ +  S+  S
Sbjct: 126 SS-RIANRRIASSNNTSKSES 131

[Close]

BLAST of Carg07052 vs. ExPASy Swiss-Prot
Match: B4LDA6 (SAGA-associated factor 11 homolog OS=Drosophila virilis OX=7244 GN=Sgf11 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 46/151 (30.46%), Postives = 68/151 (45.03%), Query Frame = 0


Query: 6   EDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADS 65
           E       ++  F  LLD V+  +  E H + + G    L+   EE   +A++  R+ + 
Sbjct: 21  EPKGLDDAANYLFQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEE---NAESAYRICEM 80

Query: 66  SNSSEANGKYVVDIFGKNHPSVASEIFDCM--NCGRSIVAGRFAPHLEKCMGRGRKARLK 125
            N         +DIFG    S A +  DC   NC R + A RFAPHLEKCMG GR +   
Sbjct: 81  PN---------LDIFG---ISTAKKPMDCTCPNCDRLVAATRFAPHLEKCMGMGRISSRI 140

Query: 126 VTRSSTATQSRYSRGSSVSAYSPYPNSTSTN 155
            +R     +   +  +S S Y    N+  T+
Sbjct: 141 ASRRLATKEGSSASSTSTSTYLQSGNTGGTD 156

[Close]

BLAST of Carg07052 vs. ExPASy TrEMBL
Match: A0A6J1GAV8 (SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.5e-89
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60
           MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV
Sbjct: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60

Query: 61  RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           RVADSSNSSEANGKYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 61  RVADSSNSSEANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

[Close]

BLAST of Carg07052 vs. ExPASy TrEMBL
Match: A0A6J1KF62 (SAGA-associated factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111493317 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MSMPDEDNASSQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 60
           MSMPDEDNASSQL+SNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV
Sbjct: 25  MSMPDEDNASSQLASNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARV 84

Query: 61  RVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 120
           R+ADSSNSSEAN KYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA
Sbjct: 85  RIADSSNSSEANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKA 144

Query: 121 RLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           RLKVTRSSTATQSRYS+GSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 145 RLKVTRSSTATQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 200

[Close]

BLAST of Carg07052 vs. ExPASy TrEMBL
Match: A0A6J1GAY0 (SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.5e-83
Identity = 164/166 (98.80%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 11  SQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE 70
           +QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE
Sbjct: 3   AQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE 62

Query: 71  ANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 130
           ANGKYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
Sbjct: 63  ANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 122

Query: 131 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 123 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

[Close]

BLAST of Carg07052 vs. ExPASy TrEMBL
Match: A0A6J1KB30 (SAGA-associated factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111493317 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 11  SQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSE 70
           +QL+SNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVR+ADSSNSSE
Sbjct: 3   AQLASNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRIADSSNSSE 62

Query: 71  ANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 130
           AN KYVVDIFG+NHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA
Sbjct: 63  ANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA 122

Query: 131 TQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           TQSRYS+GSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP
Sbjct: 123 TQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

[Close]

BLAST of Carg07052 vs. ExPASy TrEMBL
Match: A0A1S3C599 (SAGA-associated factor 11 OS=Cucumis melo OX=3656 GN=LOC103497054 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 162/178 (91.01%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MSMPDEDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60
           MSMP+EDNASS  QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA
Sbjct: 1   MSMPNEDNASSQTQLSSNLFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQA 60

Query: 61  RVRVADSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGR 120
           RVRVADSSNSSEANGKYVVDIFG+ HPSVA+EIFDCMNCGRSI+AGRFAPHLEKCMGRGR
Sbjct: 61  RVRVADSSNSSEANGKYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGR 120

Query: 121 KARLKVTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 177
           KAR KVTRSSTA QSRYSRG+ VSAYSPYPNSTSTNRLPNGTSSLAG EYSNG S +P
Sbjct: 121 KARPKVTRSSTAAQSRYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Carg07052 vs. TAIR 10
Match: AT5G58575.1 (CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 214.5 bits (545), Expect = 6.6e-56
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 6   EDNASS--QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVA 65
           EDN SS  QLSS  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +AR ++A
Sbjct: 5   EDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKIA 64

Query: 66  DSSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLK 125
           D SN+ E N KYVVDIFG+ HP VASE+F+CMNCGR IVAGRFAPHLEKCMG+GRKAR K
Sbjct: 65  DPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARAK 124

Query: 126 VTRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSN 171
            TRS+TA Q+R +R S    YSPYPNS S N+L +G+  +AG + SN
Sbjct: 125 TTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASGSPGVAGEDCSN 171

The following BLAST results are available for this feature:

BLAST of Carg07052 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037006.1	2.5e-89	100.00	Ataxin-7-like protein 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022949027.1	7.3e-89	99.43	SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata] >XP_023523179....	[more]
XP_022998744.1	3.1e-87	97.16	SAGA-associated factor 11 homolog isoform X1 [Cucurbita maxima]	[more]
XP_022949028.1	1.3e-82	98.80	SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata]	[more]
XP_022998746.1	5.6e-81	96.39	SAGA-associated factor 11 homolog isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg07052 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94BV2	9.4e-55	67.66	SAGA-associated factor 11 OS=Arabidopsis thaliana OX=3702 GN=SGF11 PE=1 SV=1	[more]
B1PM81	4.3e-07	32.17	SAGA-associated factor 11 homolog OS=Musca domestica OX=7370 GN=Sgf11 PE=2 SV=1	[more]
B4KY72	7.3e-07	31.21	SAGA-associated factor 11 homolog OS=Drosophila mojavensis OX=7230 GN=Sgf11 PE=3...	[more]
A1L209	9.5e-07	30.50	Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1	[more]
B4LDA6	9.5e-07	30.46	SAGA-associated factor 11 homolog OS=Drosophila virilis OX=7244 GN=Sgf11 PE=3 SV...	[more]

BLAST of Carg07052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAV8	3.5e-89	99.43	SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=...	[more]
A0A6J1KF62	1.5e-87	97.16	SAGA-associated factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111493317 PE=3 SV=1	[more]
A0A6J1GAY0	6.5e-83	98.80	SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=...	[more]
A0A6J1KB30	2.7e-81	96.39	SAGA-associated factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111493317 PE=3 SV=1	[more]
A0A1S3C599	1.5e-79	91.01	SAGA-associated factor 11 OS=Cucumis melo OX=3656 GN=LOC103497054 PE=3 SV=1	[more]

BLAST of Carg07052 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58575.1	6.6e-56	67.66	CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR01324...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013246	SAGA complex, Sgf11 subunit	PFAM	PF08209	Sgf11	coord: 89..119 e-value: 3.2E-17 score: 61.8
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 91..119 e-value: 3.3E-10 score: 41.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..176
None	No IPR available	PANTHER	PTHR47674	SAGA-ASSOCIATED FACTOR 11	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07052-RA	Carg07052-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0035616	histone H2B conserved C-terminal lysine deubiquitination
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0071819	DUBm complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0070461	SAGA-type complex
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding