Carg07032 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07032
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U2 small nuclear ribonucleoprotein B
Location	Carg_Chr01: 3802142 .. 3804901 (-)
RNA-Seq Expression	Carg07032
Synteny	Carg07032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTCGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGGTGATTCTGTTCGCTTTTTGCTCATCTCTTGTGTAAATGATTTTTCTTCTGTTAAATAAGTAGATAGCTTGGACTTGAACTGATCTGCGTGACATTTTATTATTTTCGTTTCGCCTTCAGCTCTCAAAATTCATGCTACTGTCCGGGGGGGGGGGGGTGGAGGGTTTTATTTGGGCGAAGTTTGGCTTGTTTTTGTTACGGTTCTTAATATTTCTGATTGCCACACAGTGATTACTCGAGAATGTGGATATTACAGTTGGAATTTTTTTTTTAGGGTGAGGGACCTGATGACTTGAAATTTTAGTCTGGATAATCAGACGGCGTCTTGCTTTCCCGTGGCATTTTGGATTTTGTTTACTGTCTTGGTTGATTAGCCCCCTTTTTTTATAACGATTTGGACTTTAGTTTTTGGGTTTTGAAAATTAAGCTGGTAAACACAACTTCCACATTGTTTTCTTTGTTTTTCCGTCTACTTCTTATGTATGTTCTCGAAATTCAAGCTAAAATTTGGAAACTAAGAAAAGTTAATTTTTAAAAACATGTTTTTGTTCTTGGAATTTGGCATGTATATTTGGAAAGATGAAGGCCATTATAAAGAAATGAAGAGAAAACAAGCACAATTTTCAAAAATCAAAAACTAAAAAGCAAATGGTTAATCATACATGGCCTTAATATTTAGTTTTTGACAATGTTGCATCACATGTGAAGTGTGGGTTTCAATCCTATGGCTTCTTAATGTTCGGATTTGATGGTATACTGAATTTCTCCTGTTGGACAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAACCTATGGTTCGTTTCTAGCTGATCACATTTTTTGAACTTGCTTTTCATAGTCTTTTCGTGGACTTTCATCTATGGGCTGTTCCAGTACGCTTCGAAGTTCTTTGGGTAACTGTGGATAGTTTGCTGGTCAGGGACTTGAAGTAATCCTGAGTGTTATGTGAAGAGCGTCATGTGAATATCTATACACAACAACACTTCCATTATGACAGTTTAGCTGCTTTGCATATCCAAAATTATGTCTTTTATCTTTTTGAATATGCAGGCTTATTATATTGGCTATATGCCTTCTTTGATCATTTTGAGATCTTCATTTGCAACTCCTGTCTATTGACATTTCTTCTGTCAATGTATGCCATCATACTTATGTAGTGCTTAAAATGTTGTCGACACACTAAATCTTGATATTGATTGTAAACTATGCGAAGGGATTTTTTTTCTCGTTTTTCTAACATAACCACAGACGTATCCATAATTCTATTTGGTACAAACAAGTATTGTTACTATCTTTTCTTCTAAACAAATCAGTTAGTTTTTGTTTCATCTTGAAAATTTGTGTATTGTCTTGTTGCCCATTCATACAATTTTCTGATATTGGATATGTAGATGACTTTATGTTGCCTATCCCAAAAGTTTGAAATGACTATTTTTCTTTTGTGCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATTGTAACTCTTAGTACTCTTTCTAAATTTCTTTTGAACTTCGTTGGTGGACATAATCTTGAAGTTGGTGGGGGGACAGTTGTAATTAAACTATGAAACATTGTTTCAGGGAACTGGTTGGAAATAACCTCTCATTTTCCAATTGCACTGCTTTTAGGAATTTGCAAGGTTTTTAAACTGTGTTCCTTATTATCTTTTAATTTGTATATCCAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGTAAGTGTCTTCACTCTTTTTCTTTTTTGGTTTGCTTTTGTTTTTGTGATGTCAAATGGTTATTTTTCTTCTCCATATGAGCTGTATTGTATTAATTGCTACTCTAGAAGTGGTCCTGAGCATTAATTGTATTGAGTCTTTTTGGATGGCGTGGTTCTCTGGTTAGTTGTTTTTTCCTCTCATCAGTTTTTAAAGACATTGGTGTCTATTTCAATTAGATTTCATGTTAGTGCCCCTTAGATCAGGCATTGTTATTCAACTTTTTTTCACAATTATTTATGCTAAGAACGCCTCTTCATTGTGTGCAGGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

mRNA sequence

TGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTCGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Coding sequence (CDS)

ATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATATGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAACTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCCAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA

Protein sequence

MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

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BLAST of Carg07032 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449.5 bits (1155), Expect = 1.7e-122
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Carg07032 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 448.4 bits (1152), Expect = 3.9e-122
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           +ETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Carg07032 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 2.0e-118
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Carg07032 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Carg07032 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 221/231 (95.67%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           E++HQSAMPNG T ENG SNATFRHANPSAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Carg07032 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.5e-94
Identity = 179/232 (77.16%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Carg07032 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 5.8e-89
Identity = 170/235 (72.34%), Postives = 199/235 (84.68%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +A NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Carg07032 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.7e-86
Identity = 172/233 (73.82%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 TEETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQ 180
            EE  QS  PN A   NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Carg07032 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 6.0e-86
Identity = 171/233 (73.39%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEK-AERKRR 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS  P+EK+KKQEEK AE+KRR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 TEETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQ 180
            EE  QS  PN A   NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Carg07032 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.3e-66
Identity = 137/234 (58.55%), Postives = 176/234 (75.21%), Query Frame = 0


Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQ- 126
            A++ MQ+FPF++KPMRIQYAKTKSD +AKADG+FVPRE++K+ +EK E+K++ E+ H  
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 127 SAMPNGATAENGGSNATFRHANPSA-------PE-ATPNNILFIENLPHETSSMMLQVLF 186
           S +  G  A  G   A      P A       PE   PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Carg07032 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.4e-123
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Carg07032 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.4e-123
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Carg07032 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 9.6e-119
Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGSFVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Carg07032 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.2e-118
Identity = 222/231 (96.10%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEKAE+KRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Carg07032 vs. ExPASy TrEMBL
Match: A0A6J1DLJ9 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Momordica charantia OX=3673 GN=LOC111022049 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.2e-118
Identity = 221/231 (95.67%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAKADGSFVPREKKKKQEEKAERKRR 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           E++HQSAMPNG T ENG SNATFRHANPSAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Carg07032 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 345.9 bits (886), Expect = 2.5e-95
Identity = 179/232 (77.16%), Postives = 202/232 (87.07%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQ 180
           EET Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+Q
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQ 180

Query: 181 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           YPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 YPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Carg07032 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 343.2 bits (879), Expect = 1.6e-94
Identity = 177/231 (76.62%), Postives = 199/231 (86.15%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180
           EET Q +MPNGAT +NG           + P   PNNILFI NLP ET+SMMLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPPPFQPSGQDTMP---PNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Carg07032 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 328.6 bits (841), Expect = 4.1e-90
Identity = 170/235 (72.34%), Postives = 199/235 (84.68%), Query Frame = 0


Query: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+FVP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVL 180
            +   T      NG +A NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+L
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQLL 180

Query: 181 FQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           F+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 FEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Carg07032 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-77
Identity = 150/197 (76.14%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 36  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVA 95
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  KADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEA-T 155
           KA+GSFVP+EKK KQEEK ERKR  EET Q +MPNGAT +NG     F+   PS  +   
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMP 126

Query: 156 PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 215
           PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQ
Sbjct: 127 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQ 186

Query: 216 GFKIDPQHPMAISFAKK 232
           GFKI PQ+PM +SFAKK
Sbjct: 187 GFKITPQNPMVVSFAKK 200

[Close]

BLAST of Carg07032 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 251.1 bits (640), Expect = 8.4e-67
Identity = 140/239 (58.58%), Postives = 177/239 (74.06%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETH 124
           AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPREK+K+ EEK   K++ ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 ---QSAMP-NGATAENGGSNATFRHA------NPSAPE--ATPNNILFIENLPHETSSMM 184
              Q  MP N A     G+              P+ PE  A PNNILF++NLPHET+ M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of Carg07032 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949507.1	1.7e-122	100.00	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_023525708.1	3.9e-122	99.57	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_004137370.1	2.0e-118	96.54	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_008457301.1	1.3e-117	96.10	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_022154903.1	1.3e-117	95.67	U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]	[more]

BLAST of Carg07032 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	3.5e-94	77.16	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	5.8e-89	72.34	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	2.7e-86	73.82	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	6.0e-86	73.39	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2Y0J7	5.3e-66	58.55	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]

BLAST of Carg07032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA04	8.4e-123	100.00	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	8.4e-123	100.00	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0LPT7	9.6e-119	96.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]
A0A5D3BF51	6.2e-118	96.10	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1DLJ9	6.2e-118	95.67	U2 small nuclear ribonucleoprotein B'' 2-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Carg07032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	2.5e-95	77.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	1.6e-94	76.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	4.1e-90	72.34	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	1.1e-77	76.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	8.4e-67	58.58	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 158..227 e-value: 3.6E-10 score: 49.8 coord: 11..85 e-value: 8.9E-13 score: 58.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 12..82 e-value: 5.3E-9 score: 35.8 coord: 159..219 e-value: 2.8E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 14.368207
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 157..231 score: 13.293717
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..118 e-value: 2.0E-31 score: 110.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 146..231 e-value: 5.8E-22 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..152
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 5..231
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 5..231
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 155..227 e-value: 4.06403E-38 score: 125.374
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 11..88 e-value: 1.89761E-51 score: 159.616
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07032-RA	Carg07032-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding