Carg06968 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06968
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Glycine-rich RNA-binding protein 4
Location	Carg_Chr01: 4219625 .. 4222817 (+)
RNA-Seq Expression	Carg06968
Synteny	Carg06968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATGAAATGGGTACGATCCTCAATCTTCCAGATTACGAATTCCTGAAATTGTTTCACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACTGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGCTTCAGTCCATTGACTATAACGATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTAGCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCAATTTCAGACTCGCCGCTCTCTTCTGTGACCTGCGTCTCTTCTTCACCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGTTGATTTTCTTCCTCTCAATTGCGTATTTTTCCCTTCATTTAGGCGTAATTTTGCTATGTATGTAAATGCAATTTGGATTTATCGAATGGTTCCAATTCCATGAGTGTAGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGGTCGTCGACTGCTTCAATTGTGTATTATGAACGTTCCGTTTTGTCAATTAAGTGAAATTGTTGTTATTTGGCGCTAACTTTTATCAATTGTTATAAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGTACTTCAAATGTTTCCATAGTGCATATTATTGTTCTAAGTGTTCGCGGAAGCAGTACTATACTACCATTCACAATAGTTTTGAAAATTTTATTAAATCTCATTTGAGTTGGACAGTCTTAATGATCTTTTCTTGTTCACTGTGATTTGTAATGCATATACGACTCACTGCCTAAAGTATATTCCATTTAGTCTTCTCTAGCCTTAGAAAAATCCATCTATAAATATTCAAAATGACTATAATCTAGGAATTACCACGTTCAATTCCATCAACTGCCATCTTCAGCAAGCCTTTTTGGTACAAATAAATCTTCCTCTACTTCTGATATAAGATTATAGAATGCACAGCTCTATACAAAAAAATGTTACCTTCAATGGACTCCAATCTACGTATTTCACAAGCAGCAATAGACCTTCAAATTCTCTATAAATTTTGATACAGAGTATATGTGATGTCCCACATTGGTTGGGGAGGAGAATAAACCACCATTTATAAGGGTGTGGAAACCTTCCTCAGCAGACGCATTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGGCCCAAAGAGGACAATATCTGCTAGCGGTGAATCTGAGCCGTTACAAATGGTATCAGAGCCGGACACTGGACGCTGTGCCAGCCTTCTCGCTGTTTTCCGAGGGGGGGAGACACGAGGTGGTGTGCCAGTGAGGACGCTAGGCCCCAAAAGGGGGTGGATTTGGGGGCGGTCCCACATCGATTAGAGGAAGGAAAGAGTGCCAGCAAGGACGTTGGGCCCTGAAGGGGGGTGGATTGTGATGTCCCACATTGATTTGGGAGGAGAACAAAGGATTGTGATGTCCCACATTGATTTGGGAGGAGAACAAACCACCATTTATAAGGGCGTGAAAACATTTCCCTACCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGAAAAAGCCCAAAGAGGACAATATCTACTAGCTGTGGATCTGGGATATCCCAGTATATATCTTGATAGGAGGAGTTGGTTATAATAGATTCAAGGTAGCATTCCTCCAGATATTCCTAATCTTGCTTCCGTTCATTCAGTTATTTCTGGTCTTGCTTCGTGTTCTACCTTCTTCAAATGTCAAAATGAATTGTGTTGCTTGTGCAAGATGGCACAAATGCTTCAGTGGACATGTTTGTAGTTAAGATCTAAGCATTTGTTATACTGATAACTTCAGTTTTATTGTAAGTTTTTCAAGTTTTCAAAATTGTTCTTTATTAATTAAACAAACACTGCAGATTTTGTGAAATATTTTTAATGAATTCAAAGTACTGTTCATATTTAAAAGTCATCTCAAGCTCTTCCTAAGTATACCACAATTATATCTCCCCCAGCTCACTAGTCACTTCCACTGGCGGGCATTCTCCTTGCTCTCTGTCGCAAAGTAAATCATGTAGGAGGCTTAGGAAGCCTATAAAAGACTGCTGAAACCAAATTATCAAGCGCTTCTATAATATTCGGCTGTTCTACACAATTCATTGTTATGAAATTCTTAATATAGATTTGGAAGAGAACTGATTAGAGAAATTTCATGGCTAAACCGTAGTTACTAGCTTTACTTTGTCAGAAGACGATCACTGTTTATTGAACTTGTTATGAAAGGATTTCTTTTTATTGAACTCAAACAACATGAAATTCAATAATTCCATGTTTTTAGCGAACAATTCGTGTATACACGTTTCAGAATTGGCCAAAGTACTGTTAAATATGAGGCACTCTGTGGCAACTATATTTGTAGAAGTTAATAGTCAAAGAACTTATTCTGAGGTTTATTTAATGGATATAACCTCCCCACCTCCTCTCATTGACAAACATGCATTGATATGATATTCTTATCTCTGATTCCATGGATAAAATTCCGATGCCACCTGCTAGAGGAAAAGGCCACTTTTTAAAATCTTGCTTATATAGCTGGAGGGTATGAACTCTGCCATCTGATTATGGTTCTTTCTTTATTTCTCTTTGATATTTGATGATCCTGTTGTCTTAAATTTATTGGTGCATGTTAGTTTCAAGCCTCATAACTTCATGGGCTAATAGGGGCAACTTTGGTTTAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAGAGAACATTGTTTCCCTGGTATTCATTTTTCGAAGTGCTGTACTTTATCTTAGGAAAACATATATAATATATATGGACAGGCTTTGCGTTATTGTTATTGATGTGAGTAGGCTTTATCTTGTCCGTATGATATATAGTCAGTGTGTTTCAGGAGTCATATTATCTCTTGAAATTAATTGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGAGATATGGTCAAAGATC

mRNA sequence

AAAAATGAAATGGGTACGATCCTCAATCTTCCAGATTACGAATTCCTGAAATTGTTTCACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACTGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGCTTCAGTCCATTGACTATAACGATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTAGCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCAATTTCAGACTCGCCGCTCTCTTCTGTGACCTGCGTCTCTTCTTCACCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAGAGAACATTGTTTCCCTGGTATTCATTTTTCGAAGTGCTGTACTTTATCTTAGGAAAACATATATAATATATATGGACAGGCTTTGCGTTATTGTTATTGATGTGAGTAGGCTTTATCTTGTCCGTATGATATATAGTCAGTGTGTTTCAGGAGTCATATTATCTCTTGAAATTAATTGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGAGATATGGTCAAAGATC

Coding sequence (CDS)

ATGGGTACGATCCTCAATCTTCCAGATTACGAATTCCTGAAATTGTTTCACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACTGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGCTTCAGTCCATTGACTATAACGATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTAGCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCAATTTCAGACTCGCCGCTCTCTTCTGTGACCTGCGTCTCTTCTTCACCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAG

Protein sequence

MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP

Homology

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BLAST of Carg06968 vs. NCBI nr
Match: KAG6607420.1 (Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037088.1 Organelle RRM domain-containing protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60
           MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM
Sbjct: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60

Query: 61  RIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGL 120
           RIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGL
Sbjct: 61  RIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGL 120

Query: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180
           SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD
Sbjct: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180

Query: 181 GRVIFVEVAKSKWELRQGLKENSSP 206
           GRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 181 GRVIFVEVAKSKWELRQGLKENSSP 205

[Close]

BLAST of Carg06968 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 395.2 bits (1014), Expect = 3.4e-106
Identity = 203/205 (99.02%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60
           MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM
Sbjct: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60

Query: 61  RIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGL 120
           RIQSIQSKLAYSTTP PFFSVKKTRSISDSPL SVTCVSSSPSPSPRRYSPSTRLYVSGL
Sbjct: 61  RIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGL 120

Query: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180
           SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD
Sbjct: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180

Query: 181 GRVIFVEVAKSKWELRQGLKENSSP 206
           GRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 181 GRVIFVEVAKSKWELRQGLKENSSP 205

[Close]

BLAST of Carg06968 vs. NCBI nr
Match: XP_022998114.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 335.5 bits (859), Expect = 3.2e-88
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88
           MTAGLLFSA PIPFFQLQS DYN+IRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 177

[Close]

BLAST of Carg06968 vs. NCBI nr
Match: XP_023525166.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 172/177 (97.18%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88
           MTAGLLFSA P PFFQLQSIDYN+IRSTVTRMRIQSIQSKL YSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60

Query: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 177

[Close]

BLAST of Carg06968 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 150/178 (84.27%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFFQ Q   +N+IRST T  RI SI+S+LAYS+TPLPFFSV+KT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 89  ISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 148
           ISDSPL S+ C SSSPSPSPRRY+PSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 149 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGLKENSS
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of Carg06968 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 80  SVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQL 139
           S ++ R I    +SS     SS SP      P T+LYVSGLSFRTTE++LR+ F  FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 140 VEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGL 199
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK++ ++ +  
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163

Query: 200 KENSSP 206
                P
Sbjct: 164 PRRDFP 169

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BLAST of Carg06968 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-19
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 90  SPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKV 149
           S  S ++  + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V
Sbjct: 33  SRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRV 92

Query: 150 ANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 204
           +   +GF F+RYAT E+S K I GM GKFLDG VIF E A+ + + +    +N+
Sbjct: 93  SGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Carg06968 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 114 RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 173
           +L+++GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 174 MHGKFLDGRVIFVEVAKSK 193
           M+GK ++G +I V+VAK+K
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Carg06968 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-17
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 114 RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 173
           RL+V+GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 174 MHGKFLDGRVIFVEVAKSKWELRQ 198
           M+G+ ++G +I V+VAK +   RQ
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of Carg06968 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.0e-17
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 92  LSSVTCVSSSPSP-SPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVA 151
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF+  GQ+VE  +VMD+V+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 152 NRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQG 199
           +R +GF F+ +A+ +E+QKA+   +G+ L+GR IFV+ AK+K  L  G
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of Carg06968 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.7e-106
Identity = 203/205 (99.02%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60
           MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM
Sbjct: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60

Query: 61  RIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGL 120
           RIQSIQSKLAYSTTP PFFSVKKTRSISDSPL SVTCVSSSPSPSPRRYSPSTRLYVSGL
Sbjct: 61  RIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGL 120

Query: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180
           SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD
Sbjct: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180

Query: 181 GRVIFVEVAKSKWELRQGLKENSSP 206
           GRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 181 GRVIFVEVAKSKWELRQGLKENSSP 205

[Close]

BLAST of Carg06968 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88
           MTAGLLFSA PIPFFQLQS DYN+IRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 177

[Close]

BLAST of Carg06968 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFF LQ+  +N+IRST T MR QS QSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 148
           IS+SPL SV CVSS  SPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 149 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AK + ELRQGLKENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Carg06968 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.5e-70
Identity = 147/180 (81.67%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFFQLQ+  ++ I ST TRMRI+SIQSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSP--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 148
           ISDS L SV CVSSSP  S SPRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 149 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Carg06968 vs. ExPASy TrEMBL
Match: A0A6J1C991 (organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008629 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.1e-62
Identity = 135/176 (76.70%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88
           MTAGLL +AAP P F  Q+   N IR T   +RIQSI  +L Y  TPLPFF VK  ++  
Sbjct: 1   MTAGLLSAAAPRPLF--QTTLNNHIRRTEMHIRIQSIPYQLGYG-TPLPFFYVKVKKTHP 60

Query: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148
           +SPL SV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAF SFGQL+EVNLVMDK
Sbjct: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120

Query: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKS+WELRQG KENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173

[Close]

BLAST of Carg06968 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.3e-34
Identity = 71/126 (56.35%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 80  SVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQL 139
           S ++ R I    +SS     SS SP      P T+LYVSGLSFRTTE++LR+ F  FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 140 VEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGL 199
           + +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGKFLDGRVIFVE AK++ ++ +  
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163

Query: 200 KENSSP 206
                P
Sbjct: 164 PRRDFP 169

[Close]

BLAST of Carg06968 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-20
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 90  SPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKV 149
           S  S ++  + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V
Sbjct: 33  SRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRV 92

Query: 150 ANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 204
           +   +GF F+RYAT E+S K I GM GKFLDG VIF E A+ + + +    +N+
Sbjct: 93  SGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Carg06968 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-19
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 112 STRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAI 171
           S +L+VS LS  TT++SLR  F+ FGQ+ E  L+ D    RP+GF F+ + +E++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 172 EGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of Carg06968 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-19
Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 114 RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 173
           +L+++GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 174 MHGKFLDGRVIFVEVAKSK 193
           M+GK ++G +I V+VAK+K
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Carg06968 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-18
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 100 SSPSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFA 159
           SSPS   RR S   S RL+VSGLS  TT E L++AF SFGQLV+  ++ D+ + R +GF 
Sbjct: 19  SSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78

Query: 160 FLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKE 202
           F+ YAT E+++KA   M+ KFLDG VIFV+ A+ + E R+ L++
Sbjct: 79  FVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR-EPRRPLQQ 121

The following BLAST results are available for this feature:

BLAST of Carg06968 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607420.1	1.1e-107	100.00	Organelle RRM domain-containing protein 6, chloroplastic, partial [Cucurbita arg...	[more]
XP_022949592.1	3.4e-106	99.02	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
XP_022998114.1	3.2e-88	97.74	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima]	[more]
XP_023525166.1	1.2e-87	97.18	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo su...	[more]
XP_038895072.1	1.9e-72	84.27	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]

BLAST of Carg06968 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	1.2e-32	56.35	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	3.3e-19	44.74	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q8L440	1.4e-17	50.63	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	3.1e-17	48.81	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q9FFZ6	9.0e-17	43.52	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]

BLAST of Carg06968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCJ4	1.7e-106	99.02	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A6J1KDG6	1.6e-88	97.74	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A1S3AYF6	1.9e-70	82.58	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	9.5e-70	81.67	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A6J1C991	1.1e-62	76.70	organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia ...	[more]

BLAST of Carg06968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	8.3e-34	56.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	2.4e-20	44.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.2e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	9.9e-19	50.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	6.4e-18	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 114..187 e-value: 6.0E-4 score: 29.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 114..187 e-value: 2.1E-25 score: 100.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 115..184 e-value: 2.5E-18 score: 65.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..191 score: 19.655382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 80..197 e-value: 2.1E-29 score: 104.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 59..203
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 59..203
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 99..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06968-RA	Carg06968-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding