Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTGGAGGAGAGCTATAGACGTAAGGACGCGGTGGTGATGGAGATGGTGGTGGAGGAGAGCTATAGATGTACGGAGGCGGTGGTGATGGAGATGGTGGAGGAGGAGACTTGTAAACGTAGGGAGGTGGTGGCGATGGAGAAAGTGGTGGAGGAGAGCTATAGACGTAAGGAGGTGGTGGAGGAGGAGATGCGTAGACATAGGGGGGTGGTGGAGGAGACTTATAAATATACGGAGGTGGTGGTGGAGACTTGTAGACGTATAGTGGTGGTGGCGGTGGAGATTTGTAGATGTACGGAGGAGGTGAAGGAGACTTGTAGAGGTATGGTGGTGGAGGTGGAGACTTGTAAATGTAAGTTGGCGGTGGCGGAGACTTGTAGACATAAGAAGTTGGTGGTGGTGGAGAGTTATAAACATAGGATGGTGGTGGTGGAGAGTTATAAAATATATCAGAACATCACCTTGTTGATACTAAGCCACTTGGTCCTGCAACTGGTATGATACCTATGTTTGCATGGTAGAGTAATCCTTTGGTCTCCACATTTTGTATTCCATTTGGTATATCACACACCTATGTACAAATCAAGACTGATACAATCAGATGTAACAATGCATGAGTTAGAGACAAATTATCTATTTTGGCCGGTTACATATAGCCGTCAGCTTTATTATTTTTAAAACGCATTTATTAGGGACGTGGAAGCTCATACATTGCTCCTGAAGTTGGAGCATCTGCTTTTAGACCCAATCTCTGCGCTCCTCCCATTGGAACTTTGTTGGATCCAAAAGAGAAACATCAACTTGACCTTCAAATTCATTTTGTGCAACAGAGTCACTGTCACTGTGATTAG
mRNA sequence
ATGGGGGTGGAGGAGAGCTATAGACGTAAGGACGCGGTGGTGATGGAGATGGTGGTGGAGGAGAGCTATAGATGTACGGAGGCGGTGGTGATGGAGATGGTGGAGGAGGAGACTTGTAAACGTAGGGAGGTGGTGGCGATGGAGAAAGTGGTGGAGGAGAGCTATAGACGTAAGGAGGTGGTGGAGGAGGAGATGCGTAGACATAGGGGGGTGGTGGAGGAGACTTATAAATATACGGAGGTGGTGGTGGAGACTTGTAGACGTATAGTGGTGGTGGCGGTGGAGATTTGTAGATGTACGGAGGAGGTGAAGGAGACTTGTAGAGGTATGGTGGTGGAGGTGGAGACTTGTAAATGTAAGTTGGCGGTGGCGGAGACTTGTAGACATAAGAAGTTGGTGGTGGTGGAGAGTTATAAACATAGGATGGTGGTGGTGGAGAGTTATAAAATATATCAGAACATCACCTTGTTGATACTAAGCCACTTGGTCCTGCAACTGGGACGTGGAAGCTCATACATTGCTCCTGAAGTTGGAGCATCTGCTTTTAGACCCAATCTCTGCGCTCCTCCCATTGGAACTTTGTTGGATCCAAAAGAGAAACATCAACTTGACCTTCAAATTCATTTTGTGCAACAGAGTCACTGTCACTGTGATTAG
Coding sequence (CDS)
ATGGGGGTGGAGGAGAGCTATAGACGTAAGGACGCGGTGGTGATGGAGATGGTGGTGGAGGAGAGCTATAGATGTACGGAGGCGGTGGTGATGGAGATGGTGGAGGAGGAGACTTGTAAACGTAGGGAGGTGGTGGCGATGGAGAAAGTGGTGGAGGAGAGCTATAGACGTAAGGAGGTGGTGGAGGAGGAGATGCGTAGACATAGGGGGGTGGTGGAGGAGACTTATAAATATACGGAGGTGGTGGTGGAGACTTGTAGACGTATAGTGGTGGTGGCGGTGGAGATTTGTAGATGTACGGAGGAGGTGAAGGAGACTTGTAGAGGTATGGTGGTGGAGGTGGAGACTTGTAAATGTAAGTTGGCGGTGGCGGAGACTTGTAGACATAAGAAGTTGGTGGTGGTGGAGAGTTATAAACATAGGATGGTGGTGGTGGAGAGTTATAAAATATATCAGAACATCACCTTGTTGATACTAAGCCACTTGGTCCTGCAACTGGGACGTGGAAGCTCATACATTGCTCCTGAAGTTGGAGCATCTGCTTTTAGACCCAATCTCTGCGCTCCTCCCATTGGAACTTTGTTGGATCCAAAAGAGAAACATCAACTTGACCTTCAAATTCATTTTGTGCAACAGAGTCACTGTCACTGTGATTAG
Protein sequence
MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEVVEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGASAFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD
Homology
BLAST of Carg06909 vs. NCBI nr
Match:
KAG7010264.1 (hypothetical protein SDJN02_27057, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 418.3 bits (1074), Expect = 4.0e-113
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query: 1 MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV 60
MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV
Sbjct: 1 MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV 60
Query: 61 VEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCK 120
VEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCK
Sbjct: 61 VEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCK 120
Query: 121 LAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGAS 180
LAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGAS
Sbjct: 121 LAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGAS 180
Query: 181 AFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD 219
AFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD
Sbjct: 181 AFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD 218
BLAST of Carg06909 vs. NCBI nr
Match:
KAG7592940.1 (Extensin domain, partial [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 84.7 bits (208), Expect = 1.1e-12
Identity = 79/167 (47.31%), Postives = 89/167 (53.29%), Query Frame = 0
Query: 3 VEESYRRKDAVV--MEMVVEESYRCTEAVVMEM---VE------EETCKRREVVAMEKVV 62
VE SY + ME VE SYR TE M VE EETCK ME VV
Sbjct: 52 VESSYIHMEEACKHMEPAVESSYRHTEEACKHMEPAVESSYRHMEETCKH-----MEPVV 111
Query: 63 EESYRRKEVVEEEMR---------RHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEE 122
E SYRRKEVVEE + RH+ VV ET K E VV TC+ + VV VE C+ EE
Sbjct: 112 ESSYRRKEVVEETCKHMEEVVVNCRHKEVVVETCKRKEEVVATCKHMEVV-VETCKHMEE 171
Query: 123 VKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVVESYK 150
V +CR V VETC V TC+H + V ESYKH VVVESY+
Sbjct: 172 VVASCRHKEVVVETCIHMEEVVATCKH-MVEVEESYKHMEVVVESYR 211
BLAST of Carg06909 vs. NCBI nr
Match:
KAG5390519.1 (hypothetical protein IGI04_032060 [Brassica rapa subsp. trilocularis])
HSP 1 Score: 82.8 bits (203), Expect = 4.0e-12
Identity = 78/156 (50.00%), Postives = 91/156 (58.33%), Query Frame = 0
Query: 3 VEESYRRKDAVVME----MVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRK 62
V ESYRR + V +VV ESYR E V EETC+ M +VV ESYRR
Sbjct: 129 VVESYRRMEVVEETCRHMVVVVESYRRMEVV------EETCRH-----MVEVV-ESYRRM 188
Query: 63 EVVEEEMR---------RHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRG 122
EVVEE R R VVEET ++T VVVETC+ +VVV VE R E V+ETCR
Sbjct: 189 EVVEETCRHTEEVVESYRRMEVVEETCRHTVVVVETCKHMVVV-VESYRHMEVVEETCRH 248
Query: 123 MVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVV 146
MVV VE + + V ETCRH + VVVESY+ VVV
Sbjct: 249 MVVVVENYRRREVVEETCRHME-VVVESYRRMEVVV 270
BLAST of Carg06909 vs. NCBI nr
Match:
XP_018451394.1 (PREDICTED: uncharacterized protein LOC108822736, partial [Raphanus sativus])
HSP 1 Score: 82.4 bits (202), Expect = 5.2e-12
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 0
Query: 17 MVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEVV-------EEEMRRHR 76
+VV ESYR E V EETC+ EVVA ESY+RKEVV EE + +R
Sbjct: 2 VVVAESYRRMEVV------EETCRHMEVVA------ESYKRKEVVVASCKHMEEAVESYR 61
Query: 77 G---VVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAET 136
VV E+Y++ EVVVE+ RR VV EIC+ EE +CR V ETCK V +
Sbjct: 62 HMVVVVVESYRHMEVVVESYRRREVVE-EICKHMEEAVGSCRHKEVVEETCKHMEVVVGS 121
Query: 137 CRHKKLVVVESYKHRMVVVESYK 150
CRHK+ VV E+Y+H MVVVESYK
Sbjct: 122 CRHKE-VVEETYRHTMVVVESYK 130
BLAST of Carg06909 vs. NCBI nr
Match:
GEW14514.1 (hypothetical protein [Tanacetum cinerariifolium])
HSP 1 Score: 80.5 bits (197), Expect = 2.0e-11
Identity = 74/172 (43.02%), Postives = 94/172 (54.65%), Query Frame = 0
Query: 1 MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV 60
MG EE+ +AV M EE+ E V M M E+ETC +EVV M EE+ KEV
Sbjct: 125 MGEEETCIHMEAVGMVTEEEETCIHMEVVGMVMGEDETCTHKEVVGMVTEEEETCTHKEV 184
Query: 61 VEEEMR-----RHRGVVEETYKYT-----------------EVVVETCRRIVVVAVEICR 120
V + +H VEETY+YT +VVVETC R V V VEIC+
Sbjct: 185 VGMVILGVVTCKHM-EVEETYRYTNEEKILGDKVDVAICVSKVVVETCTRNVKVVVEICK 244
Query: 121 C-TEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVVESYK 150
C + V ETC+ VV VETCK + V TC+H +VVV++ KH +VVVE+ K
Sbjct: 245 CNVKVVVETCKHNVVVVETCKRNVMVVVTCKH-GVVVVQTCKHNVVVVETCK 294
BLAST of Carg06909 vs. ExPASy TrEMBL
Match:
A0A6J0KWC5 (uncharacterized protein LOC108822736 OS=Raphanus sativus OX=3726 GN=LOC108822736 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 0
Query: 17 MVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEVV-------EEEMRRHR 76
+VV ESYR E V EETC+ EVVA ESY+RKEVV EE + +R
Sbjct: 2 VVVAESYRRMEVV------EETCRHMEVVA------ESYKRKEVVVASCKHMEEAVESYR 61
Query: 77 G---VVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAET 136
VV E+Y++ EVVVE+ RR VV EIC+ EE +CR V ETCK V +
Sbjct: 62 HMVVVVVESYRHMEVVVESYRRREVVE-EICKHMEEAVGSCRHKEVVEETCKHMEVVVGS 121
Query: 137 CRHKKLVVVESYKHRMVVVESYK 150
CRHK+ VV E+Y+H MVVVESYK
Sbjct: 122 CRHKE-VVEETYRHTMVVVESYK 130
BLAST of Carg06909 vs. ExPASy TrEMBL
Match:
A0A1P8AQ67 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 76/198 (38.38%), Postives = 106/198 (53.54%), Query Frame = 0
Query: 3 VEESYRRKDAVVMEM-----VVEESYRCTEAVVM-----EMVEE---------ETCKRRE 62
+EE+Y+ + VV+ VVEE+ + E VV+ E+VEE +CK E
Sbjct: 66 MEEAYKHMEPVVVSSYRRMEVVEETCKHMEEVVVKYRHKEVVEETYIHMEEAVASCKHME 125
Query: 63 VVA----MEKVVEESYRRKEVVEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRC 122
VV +VVE SYRR+EVV EE+ +H+ VV + + E VVE CR + VV VE CR
Sbjct: 126 VVVASYIRREVVEASYRRREVV-EEICKHKEVVVVSCTHKEAVVEICRHMEVV-VENCRR 185
Query: 123 TEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESY----------KHRMVVVESYK 168
E V ETC+ M VE+ + K V E CRH ++V VESY +H VVVE Y+
Sbjct: 186 KEVVAETCKHMEEVVESYRHKEEVEEICRHMEVVEVESYIRKEVVEEIGRHMAVVVEDYR 245
BLAST of Carg06909 vs. ExPASy TrEMBL
Match:
A0A1P8AQ91 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 76/198 (38.38%), Postives = 106/198 (53.54%), Query Frame = 0
Query: 3 VEESYRRKDAVVMEM-----VVEESYRCTEAVVM-----EMVEE---------ETCKRRE 62
+EE+Y+ + VV+ VVEE+ + E VV+ E+VEE +CK E
Sbjct: 30 MEEAYKHMEPVVVSSYRRMEVVEETCKHMEEVVVKYRHKEVVEETYIHMEEAVASCKHME 89
Query: 63 VVA----MEKVVEESYRRKEVVEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRC 122
VV +VVE SYRR+EVV EE+ +H+ VV + + E VVE CR + VV VE CR
Sbjct: 90 VVVASYIRREVVEASYRRREVV-EEICKHKEVVVVSCTHKEAVVEICRHMEVV-VENCRR 149
Query: 123 TEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESY----------KHRMVVVESYK 168
E V ETC+ M VE+ + K V E CRH ++V VESY +H VVVE Y+
Sbjct: 150 KEVVAETCKHMEEVVESYRHKEEVEEICRHMEVVEVESYIRKEVVEEIGRHMAVVVEDYR 209
BLAST of Carg06909 vs. ExPASy TrEMBL
Match:
A0A0A0LZN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613460 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 69/169 (40.83%), Postives = 94/169 (55.62%), Query Frame = 0
Query: 4 EESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRK----- 63
EE+Y+ K+ V MEMV EE+Y+ E V MEMVEEET K +EVV ME V EE + +
Sbjct: 68 EETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGEVVM 127
Query: 64 EVVEEEMRRHRGVVEETYKYTEVVVETCRRIV-VVAVEICRCTEEVKETCRGMVVEVETC 123
E+VEEE+ +HRG VEE + E E C+ +V VV V+ T KE ++V V C
Sbjct: 128 EMVEEEICKHRGEVEEVMEMVE--EEICKHMVAVVMVKAEEATYRHKEVVEKVMVGVVIC 187
Query: 124 K------CKLAVAETCRHKKLV-----VVESYKHRMV---VVESYKIYQ 153
K + ET RH ++V V E Y++ V V+E +IY+
Sbjct: 188 KHMEEVEMETVGEETYRHTEVVEMVMEVEEIYRYTEVVEMVMEVEEIYR 234
BLAST of Carg06909 vs. ExPASy TrEMBL
Match:
A0A5S9VZJ1 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS2584 PE=4 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 79/216 (36.57%), Postives = 105/216 (48.61%), Query Frame = 0
Query: 3 VEESYRRKDAVVMEM-----VVEESYRCTEAVVM-----EMVEE---------ETCKRRE 62
+EE+Y+ + VV+ VVEE+ + E VV+ E+VEE +CK E
Sbjct: 84 MEEAYKHMEPVVVSSYRRMEVVEETCKHMEEVVVKYRHKEVVEETYIHMEEAVASCKHME 143
Query: 63 VVA----MEKVVEESYRRKEVVEE-------------------EMRRHRGVVEETYKYTE 122
VV +VVE SYRR+EVVEE E+ RH VV E + E
Sbjct: 144 VVVASYIRREVVEASYRRREVVEEICKHKEVVVVSCTHKEAVVEICRHMEVVVENCRRKE 203
Query: 123 VVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAETCRHK---------K 168
VVVETC+ + V VE R EEV+E CR M V VE + K+ TCRHK K
Sbjct: 204 VVVETCKHMEEV-VESYRHKEEVEEICRHMEVVVEKSRRKVVEEATCRHKEEEVESYIRK 263
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7010264.1 | 4.0e-113 | 100.00 | hypothetical protein SDJN02_27057, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG7592940.1 | 1.1e-12 | 47.31 | Extensin domain, partial [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
KAG5390519.1 | 4.0e-12 | 50.00 | hypothetical protein IGI04_032060 [Brassica rapa subsp. trilocularis] | [more] |
XP_018451394.1 | 5.2e-12 | 48.95 | PREDICTED: uncharacterized protein LOC108822736, partial [Raphanus sativus] | [more] |
GEW14514.1 | 2.0e-11 | 43.02 | hypothetical protein [Tanacetum cinerariifolium] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J0KWC5 | 2.5e-12 | 48.95 | uncharacterized protein LOC108822736 OS=Raphanus sativus OX=3726 GN=LOC108822736... | [more] |
A0A1P8AQ67 | 1.2e-09 | 38.38 | Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1 | [more] |
A0A1P8AQ91 | 1.2e-09 | 38.38 | Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1 | [more] |
A0A0A0LZN4 | 4.5e-09 | 40.83 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613460 PE=4 SV=1 | [more] |
A0A5S9VZJ1 | 1.1e-07 | 36.57 | Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS2584 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |