Carg06909 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06909
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 341780 .. 342633 (-)
RNA-Seq ExpressionCarg06909
SyntenyCarg06909
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTGGAGGAGAGCTATAGACGTAAGGACGCGGTGGTGATGGAGATGGTGGTGGAGGAGAGCTATAGATGTACGGAGGCGGTGGTGATGGAGATGGTGGAGGAGGAGACTTGTAAACGTAGGGAGGTGGTGGCGATGGAGAAAGTGGTGGAGGAGAGCTATAGACGTAAGGAGGTGGTGGAGGAGGAGATGCGTAGACATAGGGGGGTGGTGGAGGAGACTTATAAATATACGGAGGTGGTGGTGGAGACTTGTAGACGTATAGTGGTGGTGGCGGTGGAGATTTGTAGATGTACGGAGGAGGTGAAGGAGACTTGTAGAGGTATGGTGGTGGAGGTGGAGACTTGTAAATGTAAGTTGGCGGTGGCGGAGACTTGTAGACATAAGAAGTTGGTGGTGGTGGAGAGTTATAAACATAGGATGGTGGTGGTGGAGAGTTATAAAATATATCAGAACATCACCTTGTTGATACTAAGCCACTTGGTCCTGCAACTGGTATGATACCTATGTTTGCATGGTAGAGTAATCCTTTGGTCTCCACATTTTGTATTCCATTTGGTATATCACACACCTATGTACAAATCAAGACTGATACAATCAGATGTAACAATGCATGAGTTAGAGACAAATTATCTATTTTGGCCGGTTACATATAGCCGTCAGCTTTATTATTTTTAAAACGCATTTATTAGGGACGTGGAAGCTCATACATTGCTCCTGAAGTTGGAGCATCTGCTTTTAGACCCAATCTCTGCGCTCCTCCCATTGGAACTTTGTTGGATCCAAAAGAGAAACATCAACTTGACCTTCAAATTCATTTTGTGCAACAGAGTCACTGTCACTGTGATTAG

mRNA sequence

ATGGGGGTGGAGGAGAGCTATAGACGTAAGGACGCGGTGGTGATGGAGATGGTGGTGGAGGAGAGCTATAGATGTACGGAGGCGGTGGTGATGGAGATGGTGGAGGAGGAGACTTGTAAACGTAGGGAGGTGGTGGCGATGGAGAAAGTGGTGGAGGAGAGCTATAGACGTAAGGAGGTGGTGGAGGAGGAGATGCGTAGACATAGGGGGGTGGTGGAGGAGACTTATAAATATACGGAGGTGGTGGTGGAGACTTGTAGACGTATAGTGGTGGTGGCGGTGGAGATTTGTAGATGTACGGAGGAGGTGAAGGAGACTTGTAGAGGTATGGTGGTGGAGGTGGAGACTTGTAAATGTAAGTTGGCGGTGGCGGAGACTTGTAGACATAAGAAGTTGGTGGTGGTGGAGAGTTATAAACATAGGATGGTGGTGGTGGAGAGTTATAAAATATATCAGAACATCACCTTGTTGATACTAAGCCACTTGGTCCTGCAACTGGGACGTGGAAGCTCATACATTGCTCCTGAAGTTGGAGCATCTGCTTTTAGACCCAATCTCTGCGCTCCTCCCATTGGAACTTTGTTGGATCCAAAAGAGAAACATCAACTTGACCTTCAAATTCATTTTGTGCAACAGAGTCACTGTCACTGTGATTAG

Coding sequence (CDS)

ATGGGGGTGGAGGAGAGCTATAGACGTAAGGACGCGGTGGTGATGGAGATGGTGGTGGAGGAGAGCTATAGATGTACGGAGGCGGTGGTGATGGAGATGGTGGAGGAGGAGACTTGTAAACGTAGGGAGGTGGTGGCGATGGAGAAAGTGGTGGAGGAGAGCTATAGACGTAAGGAGGTGGTGGAGGAGGAGATGCGTAGACATAGGGGGGTGGTGGAGGAGACTTATAAATATACGGAGGTGGTGGTGGAGACTTGTAGACGTATAGTGGTGGTGGCGGTGGAGATTTGTAGATGTACGGAGGAGGTGAAGGAGACTTGTAGAGGTATGGTGGTGGAGGTGGAGACTTGTAAATGTAAGTTGGCGGTGGCGGAGACTTGTAGACATAAGAAGTTGGTGGTGGTGGAGAGTTATAAACATAGGATGGTGGTGGTGGAGAGTTATAAAATATATCAGAACATCACCTTGTTGATACTAAGCCACTTGGTCCTGCAACTGGGACGTGGAAGCTCATACATTGCTCCTGAAGTTGGAGCATCTGCTTTTAGACCCAATCTCTGCGCTCCTCCCATTGGAACTTTGTTGGATCCAAAAGAGAAACATCAACTTGACCTTCAAATTCATTTTGTGCAACAGAGTCACTGTCACTGTGATTAG

Protein sequence

MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEVVEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGASAFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD
Homology
BLAST of Carg06909 vs. NCBI nr
Match: KAG7010264.1 (hypothetical protein SDJN02_27057, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418.3 bits (1074), Expect = 4.0e-113
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0

Query: 1   MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV 60
           MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV
Sbjct: 1   MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV 60

Query: 61  VEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCK 120
           VEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCK
Sbjct: 61  VEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCK 120

Query: 121 LAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGAS 180
           LAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGAS
Sbjct: 121 LAVAETCRHKKLVVVESYKHRMVVVESYKIYQNITLLILSHLVLQLGRGSSYIAPEVGAS 180

Query: 181 AFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD 219
           AFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD
Sbjct: 181 AFRPNLCAPPIGTLLDPKEKHQLDLQIHFVQQSHCHCD 218

BLAST of Carg06909 vs. NCBI nr
Match: KAG7592940.1 (Extensin domain, partial [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-12
Identity = 79/167 (47.31%), Postives = 89/167 (53.29%), Query Frame = 0

Query: 3   VEESYRRKDAVV--MEMVVEESYRCTEAVVMEM---VE------EETCKRREVVAMEKVV 62
           VE SY   +     ME  VE SYR TE     M   VE      EETCK      ME VV
Sbjct: 52  VESSYIHMEEACKHMEPAVESSYRHTEEACKHMEPAVESSYRHMEETCKH-----MEPVV 111

Query: 63  EESYRRKEVVEEEMR---------RHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEE 122
           E SYRRKEVVEE  +         RH+ VV ET K  E VV TC+ + VV VE C+  EE
Sbjct: 112 ESSYRRKEVVEETCKHMEEVVVNCRHKEVVVETCKRKEEVVATCKHMEVV-VETCKHMEE 171

Query: 123 VKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVVESYK 150
           V  +CR   V VETC     V  TC+H  + V ESYKH  VVVESY+
Sbjct: 172 VVASCRHKEVVVETCIHMEEVVATCKH-MVEVEESYKHMEVVVESYR 211

BLAST of Carg06909 vs. NCBI nr
Match: KAG5390519.1 (hypothetical protein IGI04_032060 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-12
Identity = 78/156 (50.00%), Postives = 91/156 (58.33%), Query Frame = 0

Query: 3   VEESYRRKDAVVME----MVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRK 62
           V ESYRR + V       +VV ESYR  E V      EETC+      M +VV ESYRR 
Sbjct: 129 VVESYRRMEVVEETCRHMVVVVESYRRMEVV------EETCRH-----MVEVV-ESYRRM 188

Query: 63  EVVEEEMR---------RHRGVVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRG 122
           EVVEE  R         R   VVEET ++T VVVETC+ +VVV VE  R  E V+ETCR 
Sbjct: 189 EVVEETCRHTEEVVESYRRMEVVEETCRHTVVVVETCKHMVVV-VESYRHMEVVEETCRH 248

Query: 123 MVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVV 146
           MVV VE  + +  V ETCRH + VVVESY+   VVV
Sbjct: 249 MVVVVENYRRREVVEETCRHME-VVVESYRRMEVVV 270

BLAST of Carg06909 vs. NCBI nr
Match: XP_018451394.1 (PREDICTED: uncharacterized protein LOC108822736, partial [Raphanus sativus])

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-12
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 0

Query: 17  MVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEVV-------EEEMRRHR 76
           +VV ESYR  E V      EETC+  EVVA      ESY+RKEVV       EE +  +R
Sbjct: 2   VVVAESYRRMEVV------EETCRHMEVVA------ESYKRKEVVVASCKHMEEAVESYR 61

Query: 77  G---VVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAET 136
               VV E+Y++ EVVVE+ RR  VV  EIC+  EE   +CR   V  ETCK    V  +
Sbjct: 62  HMVVVVVESYRHMEVVVESYRRREVVE-EICKHMEEAVGSCRHKEVVEETCKHMEVVVGS 121

Query: 137 CRHKKLVVVESYKHRMVVVESYK 150
           CRHK+ VV E+Y+H MVVVESYK
Sbjct: 122 CRHKE-VVEETYRHTMVVVESYK 130

BLAST of Carg06909 vs. NCBI nr
Match: GEW14514.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-11
Identity = 74/172 (43.02%), Postives = 94/172 (54.65%), Query Frame = 0

Query: 1   MGVEESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEV 60
           MG EE+    +AV M    EE+    E V M M E+ETC  +EVV M    EE+   KEV
Sbjct: 125 MGEEETCIHMEAVGMVTEEEETCIHMEVVGMVMGEDETCTHKEVVGMVTEEEETCTHKEV 184

Query: 61  VEEEMR-----RHRGVVEETYKYT-----------------EVVVETCRRIVVVAVEICR 120
           V   +      +H   VEETY+YT                 +VVVETC R V V VEIC+
Sbjct: 185 VGMVILGVVTCKHM-EVEETYRYTNEEKILGDKVDVAICVSKVVVETCTRNVKVVVEICK 244

Query: 121 C-TEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESYKHRMVVVESYK 150
           C  + V ETC+  VV VETCK  + V  TC+H  +VVV++ KH +VVVE+ K
Sbjct: 245 CNVKVVVETCKHNVVVVETCKRNVMVVVTCKH-GVVVVQTCKHNVVVVETCK 294

BLAST of Carg06909 vs. ExPASy TrEMBL
Match: A0A6J0KWC5 (uncharacterized protein LOC108822736 OS=Raphanus sativus OX=3726 GN=LOC108822736 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 0

Query: 17  MVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRKEVV-------EEEMRRHR 76
           +VV ESYR  E V      EETC+  EVVA      ESY+RKEVV       EE +  +R
Sbjct: 2   VVVAESYRRMEVV------EETCRHMEVVA------ESYKRKEVVVASCKHMEEAVESYR 61

Query: 77  G---VVEETYKYTEVVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAET 136
               VV E+Y++ EVVVE+ RR  VV  EIC+  EE   +CR   V  ETCK    V  +
Sbjct: 62  HMVVVVVESYRHMEVVVESYRRREVVE-EICKHMEEAVGSCRHKEVVEETCKHMEVVVGS 121

Query: 137 CRHKKLVVVESYKHRMVVVESYK 150
           CRHK+ VV E+Y+H MVVVESYK
Sbjct: 122 CRHKE-VVEETYRHTMVVVESYK 130

BLAST of Carg06909 vs. ExPASy TrEMBL
Match: A0A1P8AQ67 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 76/198 (38.38%), Postives = 106/198 (53.54%), Query Frame = 0

Query: 3   VEESYRRKDAVVMEM-----VVEESYRCTEAVVM-----EMVEE---------ETCKRRE 62
           +EE+Y+  + VV+       VVEE+ +  E VV+     E+VEE          +CK  E
Sbjct: 66  MEEAYKHMEPVVVSSYRRMEVVEETCKHMEEVVVKYRHKEVVEETYIHMEEAVASCKHME 125

Query: 63  VVA----MEKVVEESYRRKEVVEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRC 122
           VV       +VVE SYRR+EVV EE+ +H+ VV  +  + E VVE CR + VV VE CR 
Sbjct: 126 VVVASYIRREVVEASYRRREVV-EEICKHKEVVVVSCTHKEAVVEICRHMEVV-VENCRR 185

Query: 123 TEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESY----------KHRMVVVESYK 168
            E V ETC+ M   VE+ + K  V E CRH ++V VESY          +H  VVVE Y+
Sbjct: 186 KEVVAETCKHMEEVVESYRHKEEVEEICRHMEVVEVESYIRKEVVEEIGRHMAVVVEDYR 245

BLAST of Carg06909 vs. ExPASy TrEMBL
Match: A0A1P8AQ91 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 76/198 (38.38%), Postives = 106/198 (53.54%), Query Frame = 0

Query: 3   VEESYRRKDAVVMEM-----VVEESYRCTEAVVM-----EMVEE---------ETCKRRE 62
           +EE+Y+  + VV+       VVEE+ +  E VV+     E+VEE          +CK  E
Sbjct: 30  MEEAYKHMEPVVVSSYRRMEVVEETCKHMEEVVVKYRHKEVVEETYIHMEEAVASCKHME 89

Query: 63  VVA----MEKVVEESYRRKEVVEEEMRRHRGVVEETYKYTEVVVETCRRIVVVAVEICRC 122
           VV       +VVE SYRR+EVV EE+ +H+ VV  +  + E VVE CR + VV VE CR 
Sbjct: 90  VVVASYIRREVVEASYRRREVV-EEICKHKEVVVVSCTHKEAVVEICRHMEVV-VENCRR 149

Query: 123 TEEVKETCRGMVVEVETCKCKLAVAETCRHKKLVVVESY----------KHRMVVVESYK 168
            E V ETC+ M   VE+ + K  V E CRH ++V VESY          +H  VVVE Y+
Sbjct: 150 KEVVAETCKHMEEVVESYRHKEEVEEICRHMEVVEVESYIRKEVVEEIGRHMAVVVEDYR 209

BLAST of Carg06909 vs. ExPASy TrEMBL
Match: A0A0A0LZN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 69/169 (40.83%), Postives = 94/169 (55.62%), Query Frame = 0

Query: 4   EESYRRKDAVVMEMVVEESYRCTEAVVMEMVEEETCKRREVVAMEKVVEESYRRK----- 63
           EE+Y+ K+ V MEMV EE+Y+  E V MEMVEEET K +EVV ME V EE  + +     
Sbjct: 68  EETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGEVVM 127

Query: 64  EVVEEEMRRHRGVVEETYKYTEVVVETCRRIV-VVAVEICRCTEEVKETCRGMVVEVETC 123
           E+VEEE+ +HRG VEE  +  E   E C+ +V VV V+    T   KE    ++V V  C
Sbjct: 128 EMVEEEICKHRGEVEEVMEMVE--EEICKHMVAVVMVKAEEATYRHKEVVEKVMVGVVIC 187

Query: 124 K------CKLAVAETCRHKKLV-----VVESYKHRMV---VVESYKIYQ 153
           K       +    ET RH ++V     V E Y++  V   V+E  +IY+
Sbjct: 188 KHMEEVEMETVGEETYRHTEVVEMVMEVEEIYRYTEVVEMVMEVEEIYR 234

BLAST of Carg06909 vs. ExPASy TrEMBL
Match: A0A5S9VZJ1 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS2584 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 79/216 (36.57%), Postives = 105/216 (48.61%), Query Frame = 0

Query: 3   VEESYRRKDAVVMEM-----VVEESYRCTEAVVM-----EMVEE---------ETCKRRE 62
           +EE+Y+  + VV+       VVEE+ +  E VV+     E+VEE          +CK  E
Sbjct: 84  MEEAYKHMEPVVVSSYRRMEVVEETCKHMEEVVVKYRHKEVVEETYIHMEEAVASCKHME 143

Query: 63  VVA----MEKVVEESYRRKEVVEE-------------------EMRRHRGVVEETYKYTE 122
           VV       +VVE SYRR+EVVEE                   E+ RH  VV E  +  E
Sbjct: 144 VVVASYIRREVVEASYRRREVVEEICKHKEVVVVSCTHKEAVVEICRHMEVVVENCRRKE 203

Query: 123 VVVETCRRIVVVAVEICRCTEEVKETCRGMVVEVETCKCKLAVAETCRHK---------K 168
           VVVETC+ +  V VE  R  EEV+E CR M V VE  + K+    TCRHK         K
Sbjct: 204 VVVETCKHMEEV-VESYRHKEEVEEICRHMEVVVEKSRRKVVEEATCRHKEEEVESYIRK 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7010264.14.0e-113100.00hypothetical protein SDJN02_27057, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7592940.11.1e-1247.31Extensin domain, partial [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG5390519.14.0e-1250.00hypothetical protein IGI04_032060 [Brassica rapa subsp. trilocularis][more]
XP_018451394.15.2e-1248.95PREDICTED: uncharacterized protein LOC108822736, partial [Raphanus sativus][more]
GEW14514.12.0e-1143.02hypothetical protein [Tanacetum cinerariifolium][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J0KWC52.5e-1248.95uncharacterized protein LOC108822736 OS=Raphanus sativus OX=3726 GN=LOC108822736... [more]
A0A1P8AQ671.2e-0938.38Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1[more]
A0A1P8AQ911.2e-0938.38Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g26255 PE=4 SV=1[more]
A0A0A0LZN44.5e-0940.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613460 PE=4 SV=1[more]
A0A5S9VZJ11.1e-0736.57Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS2584 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06909-RACarg06909-RAmRNA