Carg06902 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06902
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	heterogeneous nuclear ribonucleoprotein F-like
Location	Carg_Chr20: 371640 .. 372797 (+)
RNA-Seq Expression	Carg06902
Synteny	Carg06902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGGTCCTAAACTTTTTAGATATTTCCACATGTGAAACTCCAAATTAAACACATTTAAAAAGTTGCAGGCAAGATTTGTATTCCCTTTCCGTATTAGCAGTTGAGTTAGAAATTGAAGCATCTGGCTTTGTTTTTTCTTGTATATATCTTCTATGTGTTCTGAAAATAGTGAACCTTCCCCACGTTTTATGTATATGGGAAACTTGAAATTGCAGATCTATATTTTTATAGCCAAGAAAGAAGTAGATGCGCATAGGAACCATGTCCTCATTTTTAGCATAGAGAAATATTTTTCTTAGATATTCGAAACATTGATTTTTTGATCTCTTAGGATGGTGTATTGACAAGGTTTCGGTTTTTGTGAATTTCATGTTTCTGTTTGGACTGAAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTTCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

mRNA sequence

ATGAGGAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTTCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Coding sequence (CDS)

ATGAGGAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGGGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTTCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MRSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR

Homology

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BLAST of Carg06902 vs. NCBI nr
Match: KAG7010271.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 524.6 bits (1350), Expect = 4.7e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MRSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRG 60
           MRSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRG
Sbjct: 1   MRSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRG 60

Query: 61  LPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRY 120
           LPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRY
Sbjct: 61  LPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRY 120

Query: 121 VEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAG 180
           VEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAG
Sbjct: 121 VEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAG 180

Query: 181 KDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIEL 240
           KDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIEL
Sbjct: 181 KDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIEL 240

Query: 241 FPSSHEELDEAISRGR 257
           FPSSHEELDEAISRGR
Sbjct: 241 FPSSHEELDEAISRGR 256

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BLAST of Carg06902 vs. NCBI nr
Match: XP_022944575.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata])

HSP 1 Score: 518.5 bits (1334), Expect = 3.4e-143
Identity = 252/255 (98.82%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVF+ASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFEASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

[Close]

BLAST of Carg06902 vs. NCBI nr
Match: KAG6570397.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 516.9 bits (1330), Expect = 9.8e-143
Identity = 252/255 (98.82%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

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BLAST of Carg06902 vs. NCBI nr
Match: XP_023511865.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP_023511866.1 heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.2 bits (1328), Expect = 1.7e-142
Identity = 251/255 (98.43%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEA+SRGR
Sbjct: 244 PSSHEELDEALSRGR 258

[Close]

BLAST of Carg06902 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 511.1 bits (1315), Expect = 5.4e-141
Identity = 248/255 (97.25%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVD+LFVHKNGKFTGEGFCVLGYPLQ+DF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK FILSEDSIHLT NSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

[Close]

BLAST of Carg06902 vs. ExPASy Swiss-Prot
Match: Q8R4X3 (RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-25
Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 0


Query: 56  VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNR 115
           V + G+PF  ME DV EFFHGL  D V +L  H  G+  G G      P     +L+RNR
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR 365

Query: 116 QNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPRSKLTDEVKDSAEHT 175
             M +RYVEV  +  +++  A  +  F  S G       P +T PRSK     K S   +
Sbjct: 366 MLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 425

Query: 176 G-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDS 235
                  + L+GLP+ A    ++DFFK   + EDSI++     G+ +GE FVEF N+ D 
Sbjct: 426 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 485

Query: 236 KAAMSKDRMTLGSRYIELFPSSHEELDEAI 253
           KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 486 KAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]

BLAST of Carg06902 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-25
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = 0


Query: 55  VVRLRGLPFDCMETDVVEFFHGLDVVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFSL 114
           VV+LRGLP+ C   DV  F     + D    + F++ + G+ +GE F  LG    V  +L
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 115 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 174
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 175 LRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKD 234
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+F+++  ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 235 RMTLGSRYIELFPSSHEEL 249
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Carg06902 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-25
Identity = 70/199 (35.18%), Postives = 114/199 (57.29%), Query Frame = 0


Query: 55  VVRLRGLPFDCMETDVVEFFHGLDVVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFSL 114
           VV+LRGLP+ C   DV  F     + D    + F++ + G+ +GE F  LG    V  +L
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 115 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 174
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 175 LRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKD 234
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+F+++  ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 235 RMTLGSRYIELFPSSHEEL 249
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Carg06902 vs. ExPASy Swiss-Prot
Match: Q9NTZ6 (RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-25
Identity = 77/224 (34.38%), Postives = 115/224 (51.34%), Query Frame = 0


Query: 48  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVL 107
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 108 GYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPR 167
             P     +L+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPR 411

Query: 168 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRP 227
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 228 SGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 253
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]

BLAST of Carg06902 vs. ExPASy Swiss-Prot
Match: Q8SQ27 (RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-25
Identity = 77/224 (34.38%), Postives = 115/224 (51.34%), Query Frame = 0


Query: 48  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVL 107
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 108 GYPLQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPR 167
             P     +L+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPR 411

Query: 168 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRP 227
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 228 SGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 253
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]

BLAST of Carg06902 vs. ExPASy TrEMBL
Match: A0A6J1FYR3 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111448988 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.6e-143
Identity = 252/255 (98.82%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVF+ASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFEASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

[Close]

BLAST of Carg06902 vs. ExPASy TrEMBL
Match: A0A6J1J8B6 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111484376 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.6e-141
Identity = 248/255 (97.25%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R PYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLDVVD+LFVHKNGKFTGEGFCVLGYPLQ+DF+LQRNRQNMGRRYV
Sbjct: 64  PFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGRRYV 123

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK FILSEDSIHLT NSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 184 DDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 243

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 244 PSSHEELDEAISRGR 258

[Close]

BLAST of Carg06902 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.3e-136
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGL
Sbjct: 6   RGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 65

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 66  PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 125

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           E+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 126 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 185

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 186 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 245

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 246 PSSHEELDEAISRGR 260

[Close]

BLAST of Carg06902 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.3e-136
Identity = 241/255 (94.51%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61
           R  YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGL
Sbjct: 6   RGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 65

Query: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121
           PFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 66  PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 125

Query: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181
           E+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 126 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGK 185

Query: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241
           DDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELF
Sbjct: 186 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 245

Query: 242 PSSHEELDEAISRGR 257
           PSSHEELDEAISRGR
Sbjct: 246 PSSHEELDEAISRGR 260

[Close]

BLAST of Carg06902 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.2e-135
Identity = 240/252 (95.24%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 5   YADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFD 64
           YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA V+QPPPFPVVRLRGLPFD
Sbjct: 59  YADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFD 118

Query: 65  CMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVEVF 124
           CMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYVE+F
Sbjct: 119 CMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIF 178

Query: 125 RSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDI 184
           RSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGKDDI
Sbjct: 179 RSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDI 238

Query: 185 LDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSS 244
           LDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELFPSS
Sbjct: 239 LDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 298

Query: 245 HEELDEAISRGR 257
           HEELDEAISRGR
Sbjct: 299 HEELDEAISRGR 310

[Close]

BLAST of Carg06902 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 366.3 bits (939), Expect = 2.0e-101
Identity = 186/287 (64.81%), Postives = 212/287 (73.87%), Query Frame = 0


Query: 5   YADGGDGREMGAKRQRIVDQG--SSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLP 64
           Y DG DGREMG KRQR++DQG    +YG  P SGFMYN   +     PPPFP VRLRGLP
Sbjct: 6   YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLP 65

Query: 65  FDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVE 124
           FDC E DVVEFFHGLDVVD+LFVH+N K TGE FCVLGYPLQVDF+LQ+NRQNMGRRYVE
Sbjct: 66  FDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVE 125

Query: 125 VFRSNRQEYYKAVANEVFD------ASGG---------------------------SPRR 184
           VFRS +QEYYKA+ANEV +      ASGG                           SPRR
Sbjct: 126 VFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRR 185

Query: 185 TAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPS 244
              R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFKDF LSED +H+T+N EGRP+
Sbjct: 186 HVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPT 245

Query: 245 GEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 257
           GEAFVEF N  DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 246 GEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Carg06902 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.9 bits (546), Expect = 7.4e-56
Identity = 115/255 (45.10%), Postives = 163/255 (63.92%), Query Frame = 0


Query: 8   GGDGREMGAKRQRIVDQGSSY--YGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDC 67
           G  G E+G+KRQR++ Q + Y   GT P S        +        FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS--------FPPFGYAGGFPVVRLRGLPFNC 69

Query: 68  METDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYVEVFR 127
            + D+ EFF GL++VD+L V KNGKF+GE F V   P+QV+ +LQR+R NMGRRYVEVFR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 128 SNRQEYYKAVANE----VFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 187
            ++Q+YY AVA E     ++     P     R+K   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 188 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 247
             I++FF  + + +  + +    +G+ +GEAFVEF    +++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 248 PSSHEELDEAISRGR 257
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]

BLAST of Carg06902 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-33
Identity = 69/158 (43.67%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 103 LQVDFSLQRNRQNMGRRYVEVFRSNRQEYYKAVANE----VFDASGGSPRRTAPRSKLTD 162
           +QV+ +LQR+R NMGRRYVEVFR ++Q+YY AVA E     ++     P     R+K   
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60

Query: 163 EVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSN 222
           E K+  E+T VL++RGLPYS  K  I++FF  + + +  + +    +G+ +GEAFVEF  
Sbjct: 61  E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 223 EHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 257
             +++ AM+KD+M++GSRY+ELFP++ EE   A +R R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of Carg06902 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 42.7 bits (99), Expect = 5.0e-04
Identity = 28/94 (29.79%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 160 VKDSAEHTGVLRLRGLPYSAGKDDILDFFKDF-ILSEDSIHLTLNSEGRPS-GEAFVEFS 219
           V D    TG L +R LPY+A ++++++ F  F  +SE  +HL L+ E + S G A++ + 
Sbjct: 286 VSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE--VHLVLDKETKRSRGIAYILYL 345

Query: 220 NEHDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 251
               +  AM + D  +   R + + P+ H E  +
Sbjct: 346 IPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

The following BLAST results are available for this feature:

BLAST of Carg06902 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010271.1	4.7e-145	100.00	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]
XP_022944575.1	3.4e-143	98.82	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata]	[more]
KAG6570397.1	9.8e-143	98.82	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]
XP_023511865.1	1.7e-142	98.43	heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022986707.1	5.4e-141	97.25	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]	[more]

BLAST of Carg06902 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R4X3	1.0e-25	35.71	RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3	[more]
P52597	3.9e-25	35.18	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	3.9e-25	35.18	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9NTZ6	3.9e-25	34.38	RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1	[more]
Q8SQ27	3.9e-25	34.38	RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1	[more]

BLAST of Carg06902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYR3	1.6e-143	98.82	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J8B6	2.6e-141	97.25	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L205	4.3e-136	94.51	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]
A0A1S3BMM3	4.3e-136	94.51	heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150...	[more]
A0A5A7TH86	1.2e-135	95.24	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]

BLAST of Carg06902 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	2.0e-101	64.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	7.4e-56	45.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	6.7e-33	43.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	5.0e-04	29.79	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 55..124 e-value: 0.37 score: 10.4 coord: 169..241 e-value: 6.8E-7 score: 38.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 171..238 e-value: 1.8E-8 score: 34.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..256 score: 10.240801
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 151..255 e-value: 1.6E-29 score: 104.0 coord: 44..143 e-value: 4.7E-19 score: 70.2
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..256
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 6..256
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 55..124 e-value: 1.1236E-20 score: 81.0643
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 169..241 e-value: 5.43159E-30 score: 105.332
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 162..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06902-RA	Carg06902-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding