Carg06887 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06887
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 442494 .. 443704 (+)
RNA-Seq ExpressionCarg06887
SyntenyCarg06887
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAACGGAATAGAAATTCACACTCTTCATCGTCTTCTTCCTCCTGAATCTGTTGTTAACGTTGCCACCTGGCGCATCTTTGCCGCCGCCGCCGCCGCCGTCGTCGACGACCATTTGAAATTCCTTGTTTTTTTCTTCCAAACTCGGCAATCCGAGCAGATTTTCGCTTTGCCGCCAATTCAGTTCCCGCGACTCACAATTGGCGCCGACGATAGGAATAGGATAACTCTTAGCATGCGCGTTATTTCCATCTTGATAAGTTGAACTTCATTCTCTGTCGTGCTTGCTTTCTGAAGGTGAGGGACTTCTGTTTTCGATCATCTATTTCCCTCTGCCTCCCGATCGTTCATTCCGCCGTAATTTCGAAGCCTTTTTCTTAAGGATTCTGATTGTGGATTGGGAGTTTGTTTGAATGCTAGGGTTTTTTCTGGGAGGGGTTCGAGGGGTTTTAGCTTTCAAAATGTTTATCGGCATTAGCTTGTTGATCTGAATATTGCAGTGTGGAATATATTTTTAGCATTAGCTTTCTGCTTTATTTGAATTTGTCTCCCCTACCGATATCCTCGTGTTTAGAATTCGATGAAGGAATTTTCTTTCTGATTGATGAACGAATTGCTTAGTCTCGAGTCACGTCTGTACACTCACTCGGGCTTCGTCGCATGCTGCACCTTCAGCTTGGATTTTGCATAAAAGAAGTAACTTCAAATAGGAGCTGATTCGTACTAAACTGTGCGGTTCAATTCTATACATTTGCTTAATTCATCTTTTGTTTGAAATAATTGCTGTGGTTCACCTATAACTGTTTTCTGCTGAACAAAAGAAACTACAAGCTGGTTTGTTGAATGTATGAGGTAAGTCAAGTCATCCAATGTATTTTGGGAGTTTTAACAAGGAATCTACAATAAAGTGTGCAGGACGGTGCCTACCAAGCTTTTCTTATACTAGTTTCTTTCTTGGACATTTTCTTGAGATTCTTGTTCCCGCTTTCTGTATTGTTGCTTTTCTCATTCACCACCCTTAGTTTTCTGTCTTCCTGATACGGGATATTTTTATGTTTTTTAATCCTTGTCCTTTTATATGGAAAAGCTTAATTTTTCTCGTATATTACTTTCCAATTTGATTGAGATGAGATAGTATGATGTTTATCCTTGCCATCTTGTTTGAACATGTTCTTATTTCAGGATACAAAGCTTCTTTTTCACCAGCACTAA

mRNA sequence

TTAAACGGAATAGAAATTCACACTCTTCATCGTCTTCTTCCTCCTGAATCTGTTGTTAACGTTGCCACCTGGCGCATCTTTGCCGCCGCCGCCGCCGCCGTCGTCGACGACCATTTGAAATTCCTTGTTTTTTTCTTCCAAACTCGGCAATCCGAGCAGATTTTCGCTTTGCCGCCAATTCAGTTCCCGCGACTCACAATTGGCGCCGACGATAGGAATAGGATAACTCTTAGCATGCGCGATACAAAGCTTCTTTTTCACCAGCACTAA

Coding sequence (CDS)

TTAAACGGAATAGAAATTCACACTCTTCATCGTCTTCTTCCTCCTGAATCTGTTGTTAACGTTGCCACCTGGCGCATCTTTGCCGCCGCCGCCGCCGCCGTCGTCGACGACCATTTGAAATTCCTTGTTTTTTTCTTCCAAACTCGGCAATCCGAGCAGATTTTCGCTTTGCCGCCAATTCAGTTCCCGCGACTCACAATTGGCGCCGACGATAGGAATAGGATAACTCTTAGCATGCGCGATACAAAGCTTCTTTTTCACCAGCACTAA

Protein sequence

LNGIEIHTLHRLLPPESVVNVATWRIFAAAAAAVVDDHLKFLVFFFQTRQSEQIFALPPIQFPRLTIGADDRNRITLSMRDTKLLFHQH
Homology
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BLAST of Carg06887 vs. NCBI nr
Match: KAG7010286.1 (hypothetical protein SDJN02_27079, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 4.4e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  LNGIEIHTLHRLLPPESVVNVATWRIFAAAAAAVVDDHLKFLVFFFQTRQSEQIFALPPI 60
          LNGIEIHTLHRLLPPESVVNVATWRIFAAAAAAVVDDHLKFLVFFFQTRQSEQIFALPPI
Sbjct: 1  LNGIEIHTLHRLLPPESVVNVATWRIFAAAAAAVVDDHLKFLVFFFQTRQSEQIFALPPI 60

Query: 61 QFPRLTIGADDRNRITLSMRDTKLLFHQH 90
          QFPRLTIGADDRNRITLSMRDTKLLFHQH
Sbjct: 61 QFPRLTIGADDRNRITLSMRDTKLLFHQH 89

The following BLAST results are available for this feature:
BLAST of Carg06887 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010286.14.4e-42100.00hypothetical protein SDJN02_27079, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06887 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06887 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06887 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06887-RACarg06887-RAmRNA