Carg06880 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06880
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LATERAL ROOT PRIMORDIUM 1-like
Location	Carg_Chr20: 496181 .. 497934 (+)
RNA-Seq Expression	Carg06880
Synteny	Carg06880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACCGTATATAGTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCTATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGTGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTATGTGGTCCGCCGCAGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCATGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGGTAAGAAAAATTGCCCCAAAATTTAGGGTTCCTTGTTTTTTCGGCGTTTCCCCCCCCCCCCCCCCCCATAAACTACGGATATTTTTTTATTCGTCGAATCGTTTGGTTCAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTCCCTAATGTATCGGAACTGAATTTGAGCGACGGTGGCGGTGGAGGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGGTTCTTCCCAGAATCAATCGGCAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCATCATCTTCTTGGACTGATT

mRNA sequence

AGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACCGTATATAGTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCTATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGTGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTATGTGGTCCGCCGCAGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCATGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTCCCTAATGTATCGGAACTGAATTTGAGCGACGGTGGCGGTGGAGGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCATCATCTTCTTGGACTGATT

Coding sequence (CDS)

ATGTGGTCCGCCGCAGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCATGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTCCCTAATGTATCGGAACTGAATTTGAGCGACGGTGGCGGTGGAGGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGA

Protein sequence

MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQIR

Homology

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: KAG7010293.1 (Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 731.9 bits (1888), Expect = 2.8e-207
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180
           SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR
Sbjct: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180

Query: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240
           GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT
Sbjct: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240

Query: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300
           TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK
Sbjct: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300

Query: 301 GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG 360
           GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG
Sbjct: 301 GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG 360

Query: 361 FLGGSNYGNQIR 373
           FLGGSNYGNQIR
Sbjct: 361 FLGGSNYGNQIR 372

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: XP_022944578.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 723.0 bits (1865), Expect = 1.3e-204
Identity = 370/373 (99.20%), Postives = 370/373 (99.20%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 373
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: XP_023512287.1 (protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 720.3 bits (1858), Expect = 8.5e-204
Identity = 368/373 (98.66%), Postives = 370/373 (99.20%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 57  LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 116

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 117 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 176

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 177 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 236

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 237 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 296

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 297 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 356

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSEL+LSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 357 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 416

Query: 361 GFLGGSNYGNQIR 373
           GFLGGSNYGNQIR
Sbjct: 417 GFLGGSNYGNQIR 429

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: KAG6570417.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 719.5 bits (1856), Expect = 1.4e-203
Identity = 366/367 (99.73%), Postives = 366/367 (99.73%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 59  MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 118

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLL SRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 119 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLASRSGSRGGGIQLWQQNQQSTQHYLKKTPS 178

Query: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180
           SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR
Sbjct: 179 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 238

Query: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240
           GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT
Sbjct: 239 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 298

Query: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300
           TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK
Sbjct: 299 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 358

Query: 301 GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG 360
           GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG
Sbjct: 359 GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG 418

Query: 361 FLGGSNY 368
           FLGGSNY
Sbjct: 419 FLGGSNY 425

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: XP_022987026.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima])

HSP 1 Score: 719.2 bits (1855), Expect = 1.9e-203
Identity = 367/372 (98.66%), Postives = 369/372 (99.19%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180
           SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR
Sbjct: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180

Query: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240
           GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT
Sbjct: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240

Query: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300
           TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK
Sbjct: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300

Query: 301 GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG 360
           GFLYDQGV+AGDGFPNVSEL+LSDGGGG RNNRNG SSAPFVDPSDVYN AASGNGGAPG
Sbjct: 301 GFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAPG 360

Query: 361 FLGGSNYGNQIR 373
           FLGGSNYGNQIR
Sbjct: 361 FLGGSNYGNQIR 371

[Close]

BLAST of Carg06880 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.2e-78
Identity = 190/351 (54.13%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTND 139
           G P   VE+   N LG+         + WQ N  + +             +LH  S TN 
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQ 120

Query: 140 LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPA 199
              G      G  S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 200 ARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPGSIDT 259
           ARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 260 SSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 319
           SSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 320 VEAGDGFPNVSELNLSDGGGGGRNNRNG-SSSAPFVDPSDVYNAAASGNGG 358
           +E  +GFP++S+L+L    GG  NN NG S+SAP +DP +V      G+GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of Carg06880 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-38
Identity = 114/259 (44.02%), Postives = 145/259 (55.98%), Query Frame = 0


Query: 107 NQQSTQHYLKKTPSSSL-DHHLHNASGTNDLI-GGGIGVFGGLASSSSATTTCQDCGNQA 166
           N  S+Q   +  P   L  HH H    + DL  G  I V     SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 167 KKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL---MAITGTAADGSSGSA--S 226
           KKDC+  RCRTCC+SRGFDC+THV+STW+P ARRRERQ    M+ +G      SG A   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 227 GTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAV 286
           G+  P+     T   TS+S+  P  S        +A F    PG++ + A+F+CV+++ V
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG--EASF----PGEVSSDALFRCVKMSGV 221

Query: 287 DDGED-EYAYQAVVKIGGHVFKGFLYDQGVEA---GDGFPNVSELNLSDGGGGGRNNRN- 346
           DDG D +YAYQ  V IGGH+FKG LYDQG E+     G       + S GGGGG +  N 
Sbjct: 222 DDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNP 281

[Close]

BLAST of Carg06880 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-34
Identity = 110/277 (39.71%), Postives = 143/277 (51.62%), Query Frame = 0


Query: 91  GSRSGSRGGGIQLW----------QQNQQSTQHYLKKTPSSSLDHHLHNASGTNDLIGGG 150
           G    S  G ++LW          QQ QQ  Q     T ++ L     N S   +  GG 
Sbjct: 47  GEAGPSYKGTLELWQHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRS-LIETSGGA 106

Query: 151 IGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRE 210
           + +    + S S   +CQDCGNQ+KKDCS  RCRTCC+SRG DC THVKSTWVPAA+RRE
Sbjct: 107 LMMM--RSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRE 166

Query: 211 RQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEE 270
           RQ    TG       GS    ++ R+ A      TS + T  P +   ++S  + G    
Sbjct: 167 RQQQLSTGQQPQQLGGSVPKRQRERIPARS----TSMAYTRIPSN---NTSGLEVG---N 226

Query: 271 LPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG-VEAGDGFPNVSE 330
            P ++ + AVF+CVRV++VDD E+EYAY+  V IGGHVFKG LYDQG  E          
Sbjct: 227 FPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQP 286

Query: 331 LNLSDGGGGG---------RNNRNGSSSAPFVDPSDV 348
           LNL   G             N   GS+S  ++DP+ +
Sbjct: 287 LNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASL 310

[Close]

BLAST of Carg06880 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 6.6e-34
Identity = 106/295 (35.93%), Postives = 144/295 (48.81%), Query Frame = 0


Query: 92  SRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLD--------------HHLHNASGTNDLI 151
           S S +  G ++LWQ + Q    +  +     LD              H+  + SG     
Sbjct: 60  SSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGETSTA 119

Query: 152 GGG-----IGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTW 211
           G G     + +  G +   S   +CQDCGNQAKKDCS  RCRTCC+SRGF+C+THV+STW
Sbjct: 120 GAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTW 179

Query: 212 VPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSH 271
           VPAA+RRERQ    T           S  K+ R     T+S    +       ++  +  
Sbjct: 180 VPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN-- 239

Query: 272 QDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGV-EAG 331
                    P ++ + AVF+CVRV++V+DGE+E+AYQ  V IGGH+FKG LYD G   +G
Sbjct: 240 --------FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSG 299

Query: 332 DGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN 367
            G  NV     S  GGGG    N       +    V  A AS +    G +G S+
Sbjct: 300 GGGYNVVAAGESSSGGGGAQQLN------LITAGSVTVATASSSTPNLGGIGSSS 338

[Close]

BLAST of Carg06880 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.2e-31
Identity = 103/273 (37.73%), Postives = 135/273 (49.45%), Query Frame = 0


Query: 105 QQNQQSTQH--------YLKKTPSSSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTT 164
           QQ QQ  QH             PS S  ++ +N S +           GG   +      
Sbjct: 65  QQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQGGMN 124

Query: 165 CQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSG 224
           CQDCGNQAKKDC   RCRTCC+SRGF C THVKSTWVPAA+RRER     +      SS 
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSR 184

Query: 225 SASGTKKPRLIASQTTSHTSTSNTTPPGS------IDTSSSHQDAGFKEELPGQIRAPAV 284
                K+ R  AS   ++    ++   GS      +  ++S+      + LP ++ +PA+
Sbjct: 185 ETQNAKRLR-EASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAI 244

Query: 285 FKCVRVTAVDDGEDE--YAYQAVVKIGGHVFKGFLYDQGVEAGDGF-----------PNV 344
           F+CVRV+++++ ED+  YAYQ  V IGGH+FKG LYDQG E  D              NV
Sbjct: 245 FRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTNV 304

Query: 345 SELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNA 351
            E       G   NN NG      +DPS +Y A
Sbjct: 305 EETATKTVTG---NNNNGL----MLDPSSLYPA 329

[Close]

BLAST of Carg06880 vs. ExPASy TrEMBL
Match: A0A6J1FY67 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448991 PE=3 SV=1)

HSP 1 Score: 723.0 bits (1865), Expect = 6.3e-205
Identity = 370/373 (99.20%), Postives = 370/373 (99.20%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 373
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of Carg06880 vs. ExPASy TrEMBL
Match: A0A6J1JCY6 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC111484595 PE=3 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 9.1e-204
Identity = 367/372 (98.66%), Postives = 369/372 (99.19%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180
           SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR
Sbjct: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180

Query: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240
           GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT
Sbjct: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240

Query: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300
           TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK
Sbjct: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300

Query: 301 GFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPG 360
           GFLYDQGV+AGDGFPNVSEL+LSDGGGG RNNRNG SSAPFVDPSDVYN AASGNGGAPG
Sbjct: 301 GFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAPG 360

Query: 361 FLGGSNYGNQIR 373
           FLGGSNYGNQIR
Sbjct: 361 FLGGSNYGNQIR 371

[Close]

BLAST of Carg06880 vs. ExPASy TrEMBL
Match: A0A5A7V0Q8 (Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00770 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 3.2e-164
Identity = 316/375 (84.27%), Postives = 330/375 (88.00%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLAVSN 
Sbjct: 55  MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 114

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 115 ATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 174

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGT N+LIGGGIG  GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 175 GSLDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 234

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGT-AADGSSGSASGTKKPRLIASQTTSHTSTS 240
           RGFDCATHVKSTWVPAARRRERQLMA+T T AADGSS S SG KKPRLI SQTTSHTSTS
Sbjct: 235 RGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTS 294

Query: 241 NTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
           NTTPP S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 295 NTTPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 354

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--GGGGGRNNRNGSSSAPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D  GGGG  NNRNGSSS+P VDPSDVYN AASG+G
Sbjct: 355 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 414

Query: 361 GAPGFLGGSNYGNQI 372
           G PGFLGGSNYGNQI
Sbjct: 415 GVPGFLGGSNYGNQI 419

[Close]

BLAST of Carg06880 vs. ExPASy TrEMBL
Match: A0A1S3BMJ0 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 3.2e-164
Identity = 316/375 (84.27%), Postives = 330/375 (88.00%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLAVSN 
Sbjct: 1   MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGT N+LIGGGIG  GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGT-AADGSSGSASGTKKPRLIASQTTSHTSTS 240
           RGFDCATHVKSTWVPAARRRERQLMA+T T AADGSS S SG KKPRLI SQTTSHTSTS
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTS 240

Query: 241 NTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
           NTTPP S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 NTTPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--GGGGGRNNRNGSSSAPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D  GGGG  NNRNGSSS+P VDPSDVYN AASG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 360

Query: 361 GAPGFLGGSNYGNQI 372
           G PGFLGGSNYGNQI
Sbjct: 361 GVPGFLGGSNYGNQI 365

[Close]

BLAST of Carg06880 vs. ExPASy TrEMBL
Match: A0A6J1H2U0 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459511 PE=3 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 6.0e-163
Identity = 310/373 (83.11%), Postives = 326/373 (87.40%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAA+QRSLNYGLGSEM MVGLRDV+VVAPA+SFNPNPHHHD NL+SD HSLAVSNS
Sbjct: 1   MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           ATAL    GVGVIPLLTAGPCLGVEEDNLL +RS +RGGGIQLWQQN     HYLKK P 
Sbjct: 61  ATAL----GVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKKMP- 120

Query: 121 SSLDHHLHNASGTND-LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHN S  N+ LI  GIG+ GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDC THVKSTWVPAARRRERQLM +T  AA GSS S SG KK RLIASQTTS TSTSN
Sbjct: 181 RGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKQRLIASQTTSRTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPP S+DTSSSHQDAGF E LPGQ+RAPAVFKCVRVTAVDDG+DEYAYQAVVKIGGH+F
Sbjct: 241 TTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNG-SSSAPFVDPSDVYNAAASGNGGA 360
           KGFLYDQGVE GD FPNVSEL+L DGGG  RNNRNG SSS+P VDPSDVYNAAA+G GGA
Sbjct: 301 KGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGA 360

Query: 361 PGFLGGSNYGNQI 372
           P FLGGSNYGNQI
Sbjct: 361 PCFLGGSNYGNQI 363

[Close]

BLAST of Carg06880 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-81
Identity = 196/365 (53.70%), Postives = 233/365 (63.84%), Query Frame = 0


Query: 11  SLNYGLGS-----EMGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATAL 70
           S+ YGL S     EMGMVGLRDV++VAPA       HH +  +IS  DH     NS  A 
Sbjct: 74  SVRYGLPSSAAATEMGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAA 133

Query: 71  GVGVGVGVIPLLTAG-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSS 130
              +GVGVIPLLTAG P   VE+   N LG+         + WQ N  + +         
Sbjct: 134 AAALGVGVIPLLTAGTPQQNVEDSDINFLGNN--------RRWQNNNNNHE--------- 193

Query: 131 SLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRG 190
               +LH  S TN    G      G  S +S T TCQDCGNQAKK+C + RCRTCC+SRG
Sbjct: 194 --TQYLHFKS-TNQTTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRG 253

Query: 191 FDCATHVKSTWVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSH 250
           FDC+THVKSTWV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSH
Sbjct: 254 FDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSH 313

Query: 251 TSTSNTTPPGSIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVK 310
           TSTSN TPP S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVK
Sbjct: 314 TSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVK 373

Query: 311 IGGHVFKGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNG-SSSAPFVDPSDVYNAAA 358
           IGGHVFKGFLYDQG+E  +GFP++S+L+L    GG  NN NG S+SAP +DP +V     
Sbjct: 374 IGGHVFKGFLYDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGG 403

[Close]

BLAST of Carg06880 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 295.0 bits (754), Expect = 8.2e-80
Identity = 190/351 (54.13%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTND 139
           G P   VE+   N LG+         + WQ N  + +             +LH  S TN 
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQ 120

Query: 140 LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPA 199
              G      G  S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 200 ARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPGSIDT 259
           ARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 260 SSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 319
           SSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 320 VEAGDGFPNVSELNLSDGGGGGRNNRNG-SSSAPFVDPSDVYNAAASGNGG 358
           +E  +GFP++S+L+L    GG  NN NG S+SAP +DP +V      G+GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of Carg06880 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 295.0 bits (754), Expect = 8.2e-80
Identity = 190/351 (54.13%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTND 139
           G P   VE+   N LG+         + WQ N  + +             +LH  S TN 
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQ 120

Query: 140 LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPA 199
              G      G  S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 200 ARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPGSIDT 259
           ARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 260 SSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 319
           SSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 320 VEAGDGFPNVSELNLSDGGGGGRNNRNG-SSSAPFVDPSDVYNAAASGNGG 358
           +E  +GFP++S+L+L    GG  NN NG S+SAP +DP +V      G+GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of Carg06880 vs. TAIR 10
Match: AT5G12330.3 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-42
Identity = 122/245 (49.80%), Postives = 144/245 (58.78%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTND 139
           G P   VE+   N LG+         + WQ N  + +             +LH  S TN 
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS-TNQ 120

Query: 140 LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPA 199
              G      G  S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 200 ARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPGSIDT 254
           ARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 214

[Close]

BLAST of Carg06880 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-39
Identity = 114/259 (44.02%), Postives = 145/259 (55.98%), Query Frame = 0


Query: 107 NQQSTQHYLKKTPSSSL-DHHLHNASGTNDLI-GGGIGVFGGLASSSSATTTCQDCGNQA 166
           N  S+Q   +  P   L  HH H    + DL  G  I V     SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 167 KKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL---MAITGTAADGSSGSA--S 226
           KKDC+  RCRTCC+SRGFDC+THV+STW+P ARRRERQ    M+ +G      SG A   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 227 GTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAV 286
           G+  P+     T   TS+S+  P  S        +A F    PG++ + A+F+CV+++ V
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG--EASF----PGEVSSDALFRCVKMSGV 221

Query: 287 DDGED-EYAYQAVVKIGGHVFKGFLYDQGVEA---GDGFPNVSELNLSDGGGGGRNNRN- 346
           DDG D +YAYQ  V IGGH+FKG LYDQG E+     G       + S GGGGG +  N 
Sbjct: 222 DDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNP 281

The following BLAST results are available for this feature:

BLAST of Carg06880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010293.1	2.8e-207	100.00	Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022944578.1	1.3e-204	99.20	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]	[more]
XP_023512287.1	8.5e-204	98.66	protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG6570417.1	1.4e-203	99.73	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987026.1	1.9e-203	98.66	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima]	[more]

BLAST of Carg06880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	1.2e-78	54.13	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	2.0e-38	44.02	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9XGX0	1.0e-34	39.71	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9SD40	6.6e-34	35.93	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9LQZ5	5.2e-31	37.73	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of Carg06880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FY67	6.3e-205	99.20	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1JCY6	9.1e-204	98.66	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114845...	[more]
A0A5A7V0Q8	3.2e-164	84.27	Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BMJ0	3.2e-164	84.27	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1H2U0	6.0e-163	83.11	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Carg06880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.4	1.9e-81	53.70	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.2	8.2e-80	54.13	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	8.2e-80	54.13	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.3	1.0e-42	49.80	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	1.4e-39	44.02	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 154..309 e-value: 1.4E-60 score: 204.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..256
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 20..371
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 156..198 e-value: 2.8E-25 score: 85.9
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 261..308 e-value: 3.5E-30 score: 101.7
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 20..371

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06880-RA	Carg06880-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding