Carg06865 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06865
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DRT111 protein
Location	Carg_Chr20: 571370 .. 573844 (-)
RNA-Seq Expression	Carg06865
Synteny	Carg06865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTTTTCTTTCTCCTCTTCTTATTTTCACTCTCTGCTGCAACCTTACGCCGCCACGCCAACCCCATCTTCTGCTGCAGCCCCCCATCAATCGGTCGGCTACCTTCAAAACTTGCTTGGATCAATTTTTTTTTTCTTTTTATTTCTTCGATTCAACCAAATTTGATTTAAAATATGATGCATTTTGAATTAGGCCAGTTTTGATTCAAAATTCTGCCAAATTTCATCTATTTTGGATGGAGATTTCTTTGTTTCTCCCTTTCTTTCCCGCAGTTTGTTTTCAATTTTATCTTGTGTTCTGTTTTCTATCTGTTTTTTCCCTTGGTATCGTCATTTATTCTTCTTGACCTCGAAGTTCTTTGCTTCTCAGTGATAAGATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGATGGATATGGAACCTGTAATGAACATGCGAAATATTAAGAAAGAAATTGAATTCCTCAGTAATTTCTCTTTTCCCCCTCAGAATTCAGCTCATTATTTGTGCATATATCTTTAGAGGGAGTTTCATTATTTCAATCGACGTTAAGAGATTAGTTTCTTTCTGAAATTATAGAGTATGTATGAAAGCCTTGGGTTCAATTTTCTCCTATTTTCTGGTTTTATGTGCCGTTATGATACGCGTGGAGTTTTACATTTGAAGAAAATATACCACAAATCTTATATGTCACATTGATTTTTCTATTTTGTGTACACTGATGGAAAACACAGAAACTATTTTATTTCAACGAAATCAATGGTTTAATTATTTCTTTCAATTGAGAATCTTTATATATTATTAGACTTTTATCAAAGAAGGATATGGTAGAGAATGAATCTTCTGAGCCTGTTAGAAATGTATGTCTGTACTAATTAATGTAGTGCTGGTGTAATATACTGAAGAGCTTTGGTCGTTTGGCTTTAGTGGCCGCTCATATTTGAGATTTGAGTCAAGATCCAAAGGAACTGAATAGATGTTGAAACTGTATGTAACTTGCATCCTCGCATTTCCTTTCAGATTCCATTTGTGTACAAGCTACTTTTTAAACATCTTCATGATCACACCTTTCCATAAGGTAGCTTCCCCGCTTTGACTTTAGATCCTTCCTCTGGTCTTATATCAATATTTATTGACCAAAATGTTTAGTAATTGTTTTGAATGATGTTTGTTTGTAAAGCCTCACCCTTTGTTCTGGGAAAATTTATAGTGCTATGACGTTCTTCTTCATACTCATTTCATTCCATATTTGTCATGTCATAGACGATGTATTACTTCATTTAATAGACTTAGACCCCACACCATTCTTAAATGCTTATGTTATGGCAAATATGCAAACAATGAATGGAGGTAGTTTGGAAATTTTCCATACTACCCTAGACTGTAGTACTAGAAAATTTCCCTGTGTGTGTGTGTGCAGTTTTTGGGTAATGAATATAAAAGGAGCAAGTATGAAGTAGCTAATTTGGTTTTTTGTTCTTTATATCAGCCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGGTACTATTACAAACTATGGATATGTTATTATGGTAAGCTGAATGAATGTAATTTATAAAGCTTACATCTGACTCTTGTGTTTACCATCGTGCAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGGTAAGGAAATCCATAAGATGGGTTACTTTGCTTTTTTCTTTTCTTTTGCCTACATCCACTCCTGTTGTTTGCAGCATTGGAATGTTAGTCAATTTGGCGGGACGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAGCGCAAACCCGAGAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACACGGTGTGCTTGATGTCAAGCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGGTAGAAGAAAAGGAGGGAAAAAGAAGAACAACAAAAGTAACAAAAAGGGTGGCGGTAAGAAGCGCCATTGAAATCATTCATCACCTACAACATTCCTGTTTTACAATGGAATATGGATATCCTTTTGTCATATCAGATGCAATTCAATGAAATCTTGCATACCCTTGTTTTGCATATAAATTTATTACGTCCATCTATCCATTGAATGAAATTTTTATTTTGATTTTGTTTTTTTGTTGGATTGGAACCCATTTGTACTTTTCGGCTTCATCTTGCCTTTTTACTTTTTTGTCGAGCTCCATCTTCTTTGTCGGGAAAGCATGAAAGACGCATTTTAAAGCCTTGAGAGAAAGCTTGAAAGGGAAAGCCCAATCTGTGATATCCCACATTGGTTGGAGAGGAGAATGAAACACCAGAGTGTGAAAACCTTTCTCTAGCAGACCTTTC

mRNA sequence

CCACTTTTCTTTCTCCTCTTCTTATTTTCACTCTCTGCTGCAACCTTACGCCGCCACGCCAACCCCATCTTCTGCTGCAGCCCCCCATCAATCGTGATAAGATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGATGGATATGGAACCTGTAATGAACATGCGAAATATTAAGAAAGAAATTGAATTCCTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGCATTGGAATGTTAGTCAATTTGGCGGGACGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAGCGCAAACCCGAGAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACACGGTGTGCTTGATGTCAAGCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGGTAGAAGAAAAGGAGGGAAAAAGAAGAACAACAAAAGTAACAAAAAGGGTGGCGGTAAGAAGCGCCATTGAAATCATTCATCACCTACAACATTCCTGTTTTACAATGGAATATGGATATCCTTTTGTCATATCAGATGCAATTCAATGAAATCTTGCATACCCTTGTTTTGCATATAAATTTATTACGTCCATCTATCCATTGAATGAAATTTTTATTTTGATTTTGTTTTTTTGTTGGATTGGAACCCATTTGTACTTTTCGGCTTCATCTTGCCTTTTTACTTTTTTGTCGAGCTCCATCTTCTTTGTCGGGAAAGCATGAAAGACGCATTTTAAAGCCTTGAGAGAAAGCTTGAAAGGGAAAGCCCAATCTGTGATATCCCACATTGGTTGGAGAGGAGAATGAAACACCAGAGTGTGAAAACCTTTCTCTAGCAGACCTTTC

Coding sequence (CDS)

ATGCATTCCAGAGATAAAAGTGCAAAAGCGGGATCATCTAGGAACTCGATGGATATGGAACCTGTAATGAACATGCGAAATATTAAGAAAGAAATTGAATTCCTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATTGAGAGTAGGAAAATTGTTTCTTTGGGTGGAAAGCCTCAAAAGAAACAAAGATTGCCTCTAAGTGTAGCACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTACAAGAGCATTGGAATGTTAGTCAATTTGGCGGGACGGCTAGTAGTAACCACTCTAGAAACTCGTTGGGGAAGCGCAAACCCGAGAACCAGGTTCTTAAGTCGAGTGAAGGCTTTTTCAAACACGGTGTGCTTGATGTCAAGCATCTACTACGCCCAGCTCCTTCTAGGAATAGTGACTTCGGAAACGAAATGGCCGGCAAAGGTAGAAGAAAAGGAGGGAAAAAGAAGAACAACAAAAGTAACAAAAAGGGTGGCGGTAAGAAGCGCCATTGA

Protein sequence

MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH

Homology

[Close]

BLAST of Carg06865 vs. NCBI nr
Match: KAG7010308.1 (hypothetical protein SDJN02_27101 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
           SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH
Sbjct: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 176

[Close]

BLAST of Carg06865 vs. NCBI nr
Match: XP_022944773.1 (uncharacterized protein LOC111449125 [Cucurbita moschata])

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-87
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDKSAKAGSSRNS DMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
           SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH
Sbjct: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 176

[Close]

BLAST of Carg06865 vs. NCBI nr
Match: XP_023511857.1 (uncharacterized protein LOC111776750 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 3.7e-85
Identity = 172/176 (97.73%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDKSAKAGSSRNS D+EPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKSAKAGSSRNSTDVEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGG ASSNHSRNSLGKRKPENQVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPENQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
           SEGFFKHGVLDV HLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH
Sbjct: 121 SEGFFKHGVLDVNHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 176

[Close]

BLAST of Carg06865 vs. NCBI nr
Match: XP_022985670.1 (uncharacterized protein LOC111483659 [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 2.4e-84
Identity = 171/176 (97.16%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDKSAKAGSSRNS DMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPI+KKQKEREQKMVQEHWNVSQFGG ASSNHSRNSLGKRKPE QVLKS
Sbjct: 61  QKKQRLPLSVARPIIKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPEKQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
           SEGFFKHGVLDVKHLLRPAPSRNSD GNEMAGKGRRKGGKKKNNKSNKKGGGKKRH
Sbjct: 121 SEGFFKHGVLDVKHLLRPAPSRNSDIGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 176

[Close]

BLAST of Carg06865 vs. NCBI nr
Match: KAG6570433.1 (Proteasome adapter and scaffold protein ECM29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-75
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1    MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
            MHSRDKSAKAGSSRNS DMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGK 
Sbjct: 1840 MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKS 1899

Query: 61   QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
            QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS
Sbjct: 1900 QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 1959

Query: 121  SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK 154
            SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK
Sbjct: 1960 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGK 1992

[Close]

BLAST of Carg06865 vs. ExPASy TrEMBL
Match: A0A6J1FZ06 (uncharacterized protein LOC111449125 OS=Cucurbita moschata OX=3662 GN=LOC111449125 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.3e-87
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDKSAKAGSSRNS DMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
           SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH
Sbjct: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 176

[Close]

BLAST of Carg06865 vs. ExPASy TrEMBL
Match: A0A6J1JBZ2 (uncharacterized protein LOC111483659 OS=Cucurbita maxima OX=3661 GN=LOC111483659 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 171/176 (97.16%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDKSAKAGSSRNS DMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKSAKAGSSRNSTDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPI+KKQKEREQKMVQEHWNVSQFGG ASSNHSRNSLGKRKPE QVLKS
Sbjct: 61  QKKQRLPLSVARPIIKKQKEREQKMVQEHWNVSQFGGMASSNHSRNSLGKRKPEKQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPAPSRNSDFGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 177
           SEGFFKHGVLDVKHLLRPAPSRNSD GNEMAGKGRRKGGKKKNNKSNKKGGGKKRH
Sbjct: 121 SEGFFKHGVLDVKHLLRPAPSRNSDIGNEMAGKGRRKGGKKKNNKSNKKGGGKKRH 176

[Close]

BLAST of Carg06865 vs. ExPASy TrEMBL
Match: A0A1S3BNE0 (uncharacterized protein LOC103491457 OS=Cucumis melo OX=3656 GN=LOC103491457 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.3e-71
Identity = 155/188 (82.45%), Postives = 162/188 (86.17%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDK AKAGSSR+S DME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKRAKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGG ASS++SR S GKR+PE QVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHSSVRQFGGMASSSNSRKSSGKRRPEEQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPA------------PSRNSDFGNEMAGKGRRKGGKKKNNKSNK 177
           SEGFFKHGVLDVKHLLRP+            P RN+DFGNEM GKGRRKGGKKKNNKS K
Sbjct: 121 SEGFFKHGVLDVKHLLRPSSSRNNGPSRNSDPFRNTDFGNEMGGKGRRKGGKKKNNKSKK 180

[Close]

BLAST of Carg06865 vs. ExPASy TrEMBL
Match: A0A0A0KEY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429080 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.2e-70
Identity = 154/188 (81.91%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MHSRDK AKAGSSR+S DME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP
Sbjct: 1   MHSRDKRAKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQRLPLSVARPIMKKQKEREQKMVQEH +V QFGG ASS++SR S GKR+PE QVLKS
Sbjct: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHSSVRQFGGMASSSNSRKSSGKRRPEEQVLKS 120

Query: 121 SEGFFKHGVLDVKHLLRPA------------PSRNSDFGNEMAGKGRRKGGKKKNNKSNK 177
           SEGFFKHGVLDVKHLLRP+            P RN+DFGNEM G GRRKGGKKKNNKS K
Sbjct: 121 SEGFFKHGVLDVKHLLRPSSSRNNGHSRNSDPFRNTDFGNEMGGLGRRKGGKKKNNKSKK 180

[Close]

BLAST of Carg06865 vs. ExPASy TrEMBL
Match: A0A6J1DHM3 (uncharacterized protein LOC111020577 OS=Momordica charantia OX=3673 GN=LOC111020577 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57
Identity = 133/184 (72.28%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MHSRDKSAKAGSSRNSMDMEPVMNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKP 60
           MH RDKS + GSS  S D+EP MN+RNI KEI FLTSSHMSWKDKKEIE+RKIVSLGGKP
Sbjct: 1   MHFRDKSTRMGSSSCSTDVEPDMNIRNIMKEINFLTSSHMSWKDKKEIENRKIVSLGGKP 60

Query: 61  QKKQRLPLSVARPIMKKQKEREQKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKS 120
           QKKQ+LPLSVARPIMKKQKEREQKM++E  N+    G +S N+SR S+GKRKPE+QVL+ 
Sbjct: 61  QKKQKLPLSVARPIMKKQKEREQKMMEERLNL----GQSSGNNSRRSMGKRKPEDQVLRP 120

Query: 121 SEGFFKHGVLDVKHLLRPAPS--------RNSDFGNEMAGKGRRKGGKKKNNKSNKKGGG 177
           SEG F++GVLDVKHLL  AP+        RN+DFGN+M GKGRRKGGKKK NKS KKGGG
Sbjct: 121 SEGIFRNGVLDVKHLLHRAPTRNTDFAPIRNTDFGNDMVGKGRRKGGKKK-NKSKKKGGG 179

[Close]

BLAST of Carg06865 vs. TAIR 10
Match: AT2G44820.2 (unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-31
Identity = 85/172 (49.42%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 23  MNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKERE 82
           ++ +NI K++    SSHM+WKDKK +E +K+ +LGGK QK  RLPLSVAR  MKKQK+RE
Sbjct: 23  LSFKNIMKDVALFGSSHMTWKDKKALEDKKVTALGGKAQKMHRLPLSVARVQMKKQKDRE 82

Query: 83  QKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSR 142
           +KM++++  + +FGG  SS+  + +  KR PE +VLKS+ G FK GVLDVKHLLR  PS 
Sbjct: 83  EKMLEQNVILGRFGGGGSSSR-KPAERKRTPEERVLKSTGGIFKGGVLDVKHLLRSGPSS 142

Query: 143 NSD-------------------FGNEMAGKGRRKGGKKKNNKSNKKGGGKKR 176
           +SD                    G  +  KG++KGGK K NK  KKGGGKKR
Sbjct: 143 SSDRDFKTKKPSRVEKNLGGGGDGGGIKSKGKKKGGKNK-NKGKKKGGGKKR 192

[Close]

BLAST of Carg06865 vs. TAIR 10
Match: AT2G44820.1 (unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-31
Identity = 85/172 (49.42%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 23  MNMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKERE 82
           ++ +NI K++    SSHM+WKDKK +E +K+ +LGGK QK  RLPLSVAR  MKKQK+RE
Sbjct: 23  LSFKNIMKDVALFGSSHMTWKDKKALEDKKVTALGGKAQKMHRLPLSVARVQMKKQKDRE 82

Query: 83  QKMVQEHWNVSQFGGTASSNHSRNSLGKRKPENQVLKSSEGFFKHGVLDVKHLLRPAPSR 142
           +KM++++  + +FGG  SS+  + +  KR PE +VLKS+ G FK GVLDVKHLLR  PS 
Sbjct: 83  EKMLEQNVILGRFGGGGSSSR-KPAERKRTPEERVLKSTGGIFKGGVLDVKHLLRSGPSS 142

Query: 143 NSD-------------------FGNEMAGKGRRKGGKKKNNKSNKKGGGKKR 176
           +SD                    G  +  KG++KGGK K NK  KKGGGKKR
Sbjct: 143 SSDRDFKTKKPSRVEKNLGGGGDGGGIKSKGKKKGGKNK-NKGKKKGGGKKR 192

The following BLAST results are available for this feature:

BLAST of Carg06865 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010308.1	1.4e-87	100.00	hypothetical protein SDJN02_27101 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022944773.1	6.8e-87	99.43	uncharacterized protein LOC111449125 [Cucurbita moschata]	[more]
XP_023511857.1	3.7e-85	97.73	uncharacterized protein LOC111776750 [Cucurbita pepo subsp. pepo]	[more]
XP_022985670.1	2.4e-84	97.16	uncharacterized protein LOC111483659 [Cucurbita maxima]	[more]
KAG6570433.1	2.7e-75	98.69	Proteasome adapter and scaffold protein ECM29, partial [Cucurbita argyrosperma s...	[more]

BLAST of Carg06865 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ06	3.3e-87	99.43	uncharacterized protein LOC111449125 OS=Cucurbita moschata OX=3662 GN=LOC1114491...	[more]
A0A6J1JBZ2	1.2e-84	97.16	uncharacterized protein LOC111483659 OS=Cucurbita maxima OX=3661 GN=LOC111483659...	[more]
A0A1S3BNE0	3.3e-71	82.45	uncharacterized protein LOC103491457 OS=Cucumis melo OX=3656 GN=LOC103491457 PE=...	[more]
A0A0A0KEY3	2.2e-70	81.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429080 PE=4 SV=1	[more]
A0A6J1DHM3	1.6e-57	72.28	uncharacterized protein LOC111020577 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Carg06865 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44820.2	1.5e-31	49.42	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bac...	[more]
AT2G44820.1	1.5e-31	49.42	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027973	Protein of unknown function DUF4602	PFAM	PF15375	DUF4602	coord: 5..106 e-value: 7.0E-17 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..120
None	No IPR available	PANTHER	PTHR28096	PROTEIN FAF1	coord: 4..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06865-RA	Carg06865-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005730	nucleolus