Carg06856 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06856
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Patatin
Location	Carg_Chr18: 1699587 .. 1700033 (-)
RNA-Seq Expression	Carg06856
Synteny	Carg06856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

mRNA sequence

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

Coding sequence (CDS)

ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATTCTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAG

Protein sequence

MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM

Homology

[Close]

BLAST of Carg06856 vs. NCBI nr
Match: KAG7012374.1 (hypothetical protein SDJN02_25126, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.5 bits (776), Expect = 9.8e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTV 60
           MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTV
Sbjct: 1   MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTV 60

Query: 61  GSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT 120
           GSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT
Sbjct: 61  GSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT 120

Query: 121 GICFVPKMNRISGFGYTILRNDFHSFHM 149
           GICFVPKMNRISGFGYTILRNDFHSFHM
Sbjct: 121 GICFVPKMNRISGFGYTILRNDFHSFHM 148

[Close]

BLAST of Carg06856 vs. NCBI nr
Match: KAG6573198.1 (hypothetical protein SDJN03_27085, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.5 bits (776), Expect = 9.8e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTV 60
           MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTV
Sbjct: 18  MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTV 77

Query: 61  GSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT 120
           GSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT
Sbjct: 78  GSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT 137

Query: 121 GICFVPKMNRISGFGYTILRNDFHSFHM 149
           GICFVPKMNRISGFGYTILRNDFHSFHM
Sbjct: 138 GICFVPKMNRISGFGYTILRNDFHSFHM 165

[Close]

BLAST of Carg06856 vs. NCBI nr
Match: KAG7019678.1 (hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.0 bits (393), Expect = 2.5e-34
Identity = 87/133 (65.41%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHR 88
           H KP STTF +S +KMAA  TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R
Sbjct: 3   HNKP-STTFCKSHEKMAA--TASVAIGTRGTIGSLIKKEIDYFAKIELERC--SSRSSQR 62

Query: 89  TQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-------------MNRISGFG 148
            Q PDMA+S CSS PPTFW S+MSWRRKKKR+   FVPK             MN+ISGF 
Sbjct: 63  PQAPDMATSGCSSLPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFN 122

[Close]

BLAST of Carg06856 vs. NCBI nr
Match: KAG6584077.1 (hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-31
Identity = 76/113 (67.26%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 108
           TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSSSPPTFW 
Sbjct: 4   TASVAIGTRGTIGSLIKKEIDYFAKIELERC--SSRSSQRPQAPDMATSGCSSSPPTFWH 63

Query: 109 SIMSWRRKKKRTGICFVPK-------------MNRISGFGYTILRNDFHSFHM 149
           S+MSWRRKKKR+   FVPK             MN+ISGF YTIL+N+FHS HM
Sbjct: 64  SVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHM 114

[Close]

BLAST of Carg06856 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 7.9e-28
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 108
           TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQ
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQ 63

Query: 109 SIMSWRRKKKRTGICFVPK------------MNRISGFGYTILRNDFHSFHM 149
           SIMSWRRKKK T   F+ K            MN+ISG  YTIL+NDFHS H+
Sbjct: 64  SIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Carg06856 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHR 88
           H KP++ TF++S   MAA   APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R
Sbjct: 3   HNKPTN-TFYKSHYGMAA--IAPVAIGTRGTIGSLVKKEIDYFAKIELE----TSISSQR 62

Query: 89  TQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK------------MNRISGFGY 148
           +Q P+MASS C SSPPTFWQS+MSWRRK K T   FV K            MN+ISG  Y
Sbjct: 63  SQGPEMASSGCRSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSY 122

[Close]

BLAST of Carg06856 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 49  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 108
           TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQ
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQ 63

Query: 109 SIMSWRRKKKRTGICFVPK------------MNRISGFGYTILRNDFHSFHM 149
           SIMSWRRKKK T   F+ K            MN+ISG  YTIL+NDFHS H+
Sbjct: 64  SIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Carg06856 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 79/133 (59.40%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHR 88
           H KP STTF +  ++MAA  TAPVAIGTRGTVGSLVK EIDY+AKIE ERC  +      
Sbjct: 3   HSKP-STTFCKFLEEMAA--TAPVAIGTRGTVGSLVKKEIDYFAKIEFERCSGN------ 62

Query: 89  TQRPDMASSS-CSSSPPTFWQSIMSWRRKKKRTGICFVPK------------MNRISGFG 148
               DMASSS  SSSPPTFW ++MSWRRKKKR G  F+ K            +N+ISGF 
Sbjct: 63  ----DMASSSRRSSSPPTFWHTVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFN 122

[Close]

BLAST of Carg06856 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.7e-24
Identity = 67/100 (67.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 29  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHR 88
           H KP++ TF++S   MAA  TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R
Sbjct: 3   HNKPNN-TFYKSHYGMAA--TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQR 62

Query: 89  TQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPKM 129
           +Q P+MASS C SSPPTFWQSIMSWRRKKK T   F+ KM
Sbjct: 63  SQGPEMASSGCRSSPPTFWQSIMSWRRKKKLTSNRFITKM 95

[Close]

BLAST of Carg06856 vs. ExPASy TrEMBL
Match: A0A314Z3X1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_12060 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 28  LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSS-S 87
           + YK SSTT  +  +       AP+AIGTRGTVGSLV+ EI+Y++K+EL+R   SSSS  
Sbjct: 1   MQYKASSTTEIKFPETNTMAAPAPIAIGTRGTVGSLVRKEIEYFSKLELDRLRGSSSSRK 60

Query: 88  HRTQRPDMASSSCS-SSPPTFWQSIMSWRRKKKR------TGICFVPK------MNRISG 146
            + Q  DM SSSC+ SS P+FW  IM+W+RKK+R      + IC   K      +N I G
Sbjct: 61  PQGQIVDMTSSSCTHSSKPSFWFLIMTWKRKKRRSSRRFLSSICSATKVAETNRLNCIPG 120

[Close]

BLAST of Carg06856 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 48  VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSS 107
           + AP+AIGTRGT+GSLV+ EIDY+            R  +S  + +  ++ D +SS   S
Sbjct: 1   MAAPIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGS 60

Query: 108 SPPTFWQSIMSWRRKKKRT---GICFVPKM---------NRISGFGYTILRND 143
                W S   WR+KK++T   G  F P M         NR+ GF Y IL++D
Sbjct: 61  -----WFSKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENRVPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Carg06856 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012374.1	9.8e-79	100.00	hypothetical protein SDJN02_25126, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573198.1	9.8e-79	100.00	hypothetical protein SDJN03_27085, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019678.1	2.5e-34	65.41	hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6584077.1	7.6e-31	67.26	hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_016898893.1	7.9e-28	64.29	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]

BLAST of Carg06856 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX43	1.2e-29	61.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A1S4DSE9	3.8e-28	64.29	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A6J1CHB1	2.5e-27	59.40	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7UTL1	9.7e-24	67.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A314Z3X1	3.0e-17	46.21	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_120...	[more]

BLAST of Carg06856 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	1.0e-09	37.17	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 30..146
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 30..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06856-RA	Carg06856-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm