Carg06841 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06841
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionglycine-rich protein 5
LocationCarg_Chr18: 1609198 .. 1609575 (-)
RNA-Seq ExpressionCarg06841
SyntenyCarg06841
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGCCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCCGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGGCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGTGGGCTTGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGTGGTGGCAGTGGCGTTTTAGGTGGCGGAGCTGGAGGTGGAGGAGGAGCTGGCGGTGGATTTGGAGGTGGACTGCCTTGA

mRNA sequence

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGCCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCCGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGGCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGTGGGCTTGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGTGGTGGCAGTGGCGTTTTAGGTGGCGGAGCTGGAGGTGGAGGAGGAGCTGGCGGTGGATTTGGAGGTGGACTGCCTTGA

Coding sequence (CDS)

ATGGGTTCTTTTTTGGCTTTGAAATTCCTCTGCCTGCTGGTTCTGTTTGCACTAATCTGTGCCTCCGAGCCCAGAAGGCTTGTTGGCACTGGGGGAGGGTTTGGAAGTGAAAAGACAGGCTATTTCCAGTTCTTTCCTGGTTATGGCGGTGGGCTCGGCGGTGGTGGAGGGTTTGGTGGTGGTGGCGGCGGTGGATTAGGTGGTGGTTCGGGCTTTGGCAGTGGAGGTGGAGCGGGATTTGGGTCTGGAATTGGTGGGCTTGGCGGTGGTGGAGGTGGAGGGTTCGGCGGTGGTGGTGGTGGTGGCAGTGGCGTTTTAGGTGGCGGAGCTGGAGGTGGAGGAGGAGCTGGCGGTGGATTTGGAGGTGGACTGCCTTGA

Protein sequence

MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGFGGGLP
Homology
[Close]
BLAST of Carg06841 vs. NCBI nr
Match: KAG6573180.1 (hypothetical protein SDJN03_27067, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012359.1 hypothetical protein SDJN02_25111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60
           MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120
           GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF
Sbjct: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120

Query: 121 GGGLP 126
           GGGLP
Sbjct: 121 GGGLP 125

[Close]
BLAST of Carg06841 vs. NCBI nr
Match: XP_022954435.1 (glycine-rich protein 5 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 6.7e-36
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60
           MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYG GLGGGGGFGG
Sbjct: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGSGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120
           GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF
Sbjct: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120

Query: 121 GGGLP 126
           GGGLP
Sbjct: 121 GGGLP 125

[Close]
BLAST of Carg06841 vs. NCBI nr
Match: XP_022994117.1 (glycine-rich protein 5 [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 5.3e-33
Identity = 121/125 (96.80%), Postives = 121/125 (96.80%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60
           MGSFLALKFL LLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120
           GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGG GSGVLGGGA  GGGAGGGF
Sbjct: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGA--GGGAGGGF 120

Query: 121 GGGLP 126
           GGGLP
Sbjct: 121 GGGLP 123

[Close]
BLAST of Carg06841 vs. NCBI nr
Match: XP_023542188.1 (glycine-rich protein 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-32
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGF-G 60
           MGSFLALKFL LLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYG GLGGGGGF G
Sbjct: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGSGLGGGGGFGG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLGGGGGGGFGGGGG GSGVLGGGAGGGGGAGGG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGGGAGGG 120

Query: 121 FGGGLP 126
           FGGGLP
Sbjct: 121 FGGGLP 126

[Close]
BLAST of Carg06841 vs. NCBI nr
Match: XP_038895952.1 (glycine-rich cell wall structural protein-like [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 9.6e-19
Identity = 104/126 (82.54%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA KFL L+VL ALI ASEPR+LV T GG   SEKT  FQFFPG+GGGLGGGGG+G
Sbjct: 1   MGS-LAFKFLWLVVLCALIWASEPRKLVITNGGEIESEKTLAFQFFPGFGGGLGGGGGYG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGGGGG G+LGGGA  GGGAGGG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGGGGGILGGGA--GGGAGGG 120

Query: 121 FGGGLP 126
           FGGGLP
Sbjct: 121 FGGGLP 123

[Close]
BLAST of Carg06841 vs. ExPASy TrEMBL
Match: A0A6J1GSE7 (glycine-rich protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111456697 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60
           MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYG GLGGGGGFGG
Sbjct: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGSGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120
           GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF
Sbjct: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120

Query: 121 GGGLP 126
           GGGLP
Sbjct: 121 GGGLP 125

[Close]
BLAST of Carg06841 vs. ExPASy TrEMBL
Match: A0A6J1JUT9 (glycine-rich protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111489946 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 121/125 (96.80%), Postives = 121/125 (96.80%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60
           MGSFLALKFL LLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG
Sbjct: 1   MGSFLALKFLWLLVLFALICASEPRRLVGTGGGFGSEKTGYFQFFPGYGGGLGGGGGFGG 60

Query: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGGF 120
           GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGG GSGVLGGGA  GGGAGGGF
Sbjct: 61  GGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGSGSGVLGGGA--GGGAGGGF 120

Query: 121 GGGLP 126
           GGGLP
Sbjct: 121 GGGLP 123

[Close]
BLAST of Carg06841 vs. ExPASy TrEMBL
Match: A0A5D3BMG3 (Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005650 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 106/126 (84.13%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+L L+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGGGG  G+LGGGAGGGG  GGG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGG--GILGGGAGGGG--GGG 120

Query: 121 FGGGLP 126
           FGGGLP
Sbjct: 121 FGGGLP 121

[Close]
BLAST of Carg06841 vs. ExPASy TrEMBL
Match: E5GC63 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 106/126 (84.13%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+L L+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGGGG  G+LGGGAGGGG  GGG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGG--GILGGGAGGGG--GGG 120

Query: 121 FGGGLP 126
           FGGGLP
Sbjct: 121 FGGGLP 121

[Close]
BLAST of Carg06841 vs. ExPASy TrEMBL
Match: A0A1S3BEW4 (glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC103489125 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 106/126 (84.13%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MGSFLALKFLCLLVLFALICASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFG 60
           MGS LA K+L L+VL ALICASEPRRLV T GG   SEKT  FQFFPGYGGGLGGGGGFG
Sbjct: 1   MGS-LAFKYLWLVVLCALICASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFG 60

Query: 61  GGGGGGLGGGSGFGSGGGAGFGSGIGGLGGGGGGGFGGGGGGGSGVLGGGAGGGGGAGGG 120
           GGGGGGLGGGSGFGSGGG GFGSGIGGLG GGGGGFGGGGGG  G+LGGGAGGGG  GGG
Sbjct: 61  GGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGG--GILGGGAGGGG--GGG 120

Query: 121 FGGGLP 126
           FGGGLP
Sbjct: 121 FGGGLP 121

The following BLAST results are available for this feature:
BLAST of Carg06841 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573180.11.3e-36100.00hypothetical protein SDJN03_27067, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022954435.16.7e-3699.20glycine-rich protein 5 [Cucurbita moschata][more]
XP_022994117.15.3e-3396.80glycine-rich protein 5 [Cucurbita maxima][more]
XP_023542188.14.5e-3296.03glycine-rich protein 23 [Cucurbita pepo subsp. pepo][more]
XP_038895952.19.6e-1982.54glycine-rich cell wall structural protein-like [Benincasa hispida][more]
BLAST of Carg06841 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06841 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GSE73.2e-3699.20glycine-rich protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111456697 PE=4 SV=1[more]
A0A6J1JUT92.6e-3396.80glycine-rich protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111489946 PE=4 SV=1[more]
A0A5D3BMG34.7e-1984.13Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695... [more]
E5GC634.7e-1984.13Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A1S3BEW44.7e-1984.13glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC10348912... [more]
BLAST of Carg06841 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06841-RACarg06841-RAmRNA