Carg06838 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06838
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine repetitive matrix protein 1-like
Location	Carg_Chr18: 1570789 .. 1572507 (+)
RNA-Seq Expression	Carg06838
Synteny	Carg06838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAGGCATTATCAGCCCCCCAAGATCCCGATCTTCCCCCAGAGAAAGCAGACCATTCAACAACAATGGAGCCACCAATCCACCGTCCAGACCCAATTACATGTCCCCACGCCGCCGCCCAACGACACCCATTAACCCCAACGAGCTGCGAACCCATAGAAAAGAACCCCAACCCACCGTCGTGAAACGCCCAACCAAACCCACCGATAGATCTTCAAACCCTCCACGCATCGACCCATCAAGACCCAATTCAAAGCTTGCCCCCTCAAGGCCAGCAGCCCCAAGCCCAAATGAGAGGAAATTAGACACCAAAACAGCGCCTAAAACCACCACTAGATTCTCTTCCCCTCGCCCAACCAAACCAATAACTCCACCGCCGTCGAAGAGCAATGGAAAAGGAGCAAGTGGGTCTGGTTCAAGATCCGATTTTTCTCGTGCCAAACCAAGCGATTCTCAAAAGGGTACTCCCAAAAACTTGCGGAGCGGTCGGTTGAATGATCAGCAAGATGAACAAATTGTTCGTAGTTATTCGGATGGATCTTATGGTGCTCGTACTCTTAGCGACCCTGATGTTCATAAGTTACATCAGCTTTCTCTTGATGGTAAGCCTTTACCCATTTTCAGATTCAAAAGGTTTATGTATGTATTTTGGGTCGAGGATTGTTGGTAGAAAGTCCCATTCGCCAATTTAGAGAATGTCATATCTTCGTTGGTATGAGCAATATCGTACCAATGTAGAGATCTGCGATTCCTAACATGGTATCAAAGTCATGCCCTTAATTTAGTCATGTCAATAAAATCTTCAAGTATCGAACAAAGAAATTGCTAGTGTCGAAGGAGTCGTCAAAAGTGATTCATGTGTCGAACAAAGAGTGTACTTTGTTCGAGAGCTCCAGAGAAATGAGTCGAGTCTCGATTAAGGGGAAGTTGTTCGAGGGAAACATAGACCTCAAGGGAGGCTCTATGGTATACTTTGTTCGAGGGGAGTATTGTTGGGAGGGAGTCCCACATTGGCTAGTTTAGGGAATGATCGTGGATTTATAAGTAAAGAATATATCATACCAATGTGGAGATCCGTGATCCCTAACTTTCTTGAAAATTTTTTGTAGATAAGGATCTTGCGAACATCGTTCTTCATGCAAATTTGGTATACGAATCACTCGCCTCAGAAACAAACGAAGAAGAATGTTCTTCCCAAGGGAATAATAGTTCAAGAATGTTTCAAATTTACAAGGAAATTGCATCCCATCATCAAGGAAACTCATCCATTACATCTTACATTACAAAGCTGAAGGCTTTATGGGATGAACTCGAGGCCTACATTGACACCCCCAAATGTTCTTGCGGTTCAACACAGAAACAGAGTGAGGAAATTGAAAGGGAAAAAGTCATGCAATTTCTTATAGGATTAAACGATTCTTATTCCACCATTTGTGCTCAAATTCTTCATATGAAGCCATTTCCAACGGTGGAAAAAGCTTGTTGTGCAATACTTCGTGAAGAAAAACGCAGGGAATTGGTGTTGTCATTGGAGATTGTTGCGGCCAAAGTGATCCAAAACAATTGGCTTCTTCAAAATGGTCATTCGATCAATGGTGATAATGAAGAAGTTGATCATATGAATCTTCAGGACCTGAAAGCTGATCAAAACGAAGCTATGAGTATTCCCATTGAGCCATTGCTCATAGACCTTGGCTCTCCTGTTCGATGTTGA

mRNA sequence

ATGGTTCGAGGCATTATCAGCCCCCCAAGATCCCGATCTTCCCCCAGAGAAAGCAGACCATTCAACAACAATGGAGCCACCAATCCACCGTCCAGACCCAATTACATGTCCCCACGCCGCCGCCCAACGACACCCATTAACCCCAACGAGCTGCGAACCCATAGAAAAGAACCCCAACCCACCGTCGTGAAACGCCCAACCAAACCCACCGATAGATCTTCAAACCCTCCACGCATCGACCCATCAAGACCCAATTCAAAGCTTGCCCCCTCAAGGCCAGCAGCCCCAAGCCCAAATGAGAGGAAATTAGACACCAAAACAGCGCCTAAAACCACCACTAGATTCTCTTCCCCTCGCCCAACCAAACCAATAACTCCACCGCCGTCGAAGAGCAATGGAAAAGGAGCAAGTGGGTCTGGTTCAAGATCCGATTTTTCTCGTGCCAAACCAAGCGATTCTCAAAAGGGTACTCCCAAAAACTTGCGGAGCGGTCGGTTGAATGATCAGCAAGATGAACAAATTGTTCGTAGTTATTCGGATGGATCTTATGGTGCTCGTACTCTTAGCGACCCTGATGTTCATAAGTTACATCAGCTTTCTCTTGATGATAAGGATCTTGCGAACATCGTTCTTCATGCAAATTTGGTATACGAATCACTCGCCTCAGAAACAAACGAAGAAGAATGTTCTTCCCAAGGGAATAATAGTTCAAGAATGTTTCAAATTTACAAGGAAATTGCATCCCATCATCAAGGAAACTCATCCATTACATCTTACATTACAAAGCTGAAGGCTTTATGGGATGAACTCGAGGCCTACATTGACACCCCCAAATGTTCTTGCGGTTCAACACAGAAACAGAGTGAGGAAATTGAAAGGGAAAAAGTCATGCAATTTCTTATAGGATTAAACGATTCTTATTCCACCATTTGTGCTCAAATTCTTCATATGAAGCCATTTCCAACGGTGGAAAAAGCTTGTTGTGCAATACTTCGTGAAGAAAAACGCAGGGAATTGGTGTTGTCATTGGAGATTGTTGCGGCCAAAGTGATCCAAAACAATTGGCTTCTTCAAAATGGTCATTCGATCAATGGTGATAATGAAGAAGTTGATCATATGAATCTTCAGGACCTGAAAGCTGATCAAAACGAAGCTATGAGTATTCCCATTGAGCCATTGCTCATAGACCTTGGCTCTCCTGTTCGATGTTGA

Coding sequence (CDS)

ATGGTTCGAGGCATTATCAGCCCCCCAAGATCCCGATCTTCCCCCAGAGAAAGCAGACCATTCAACAACAATGGAGCCACCAATCCACCGTCCAGACCCAATTACATGTCCCCACGCCGCCGCCCAACGACACCCATTAACCCCAACGAGCTGCGAACCCATAGAAAAGAACCCCAACCCACCGTCGTGAAACGCCCAACCAAACCCACCGATAGATCTTCAAACCCTCCACGCATCGACCCATCAAGACCCAATTCAAAGCTTGCCCCCTCAAGGCCAGCAGCCCCAAGCCCAAATGAGAGGAAATTAGACACCAAAACAGCGCCTAAAACCACCACTAGATTCTCTTCCCCTCGCCCAACCAAACCAATAACTCCACCGCCGTCGAAGAGCAATGGAAAAGGAGCAAGTGGGTCTGGTTCAAGATCCGATTTTTCTCGTGCCAAACCAAGCGATTCTCAAAAGGGTACTCCCAAAAACTTGCGGAGCGGTCGGTTGAATGATCAGCAAGATGAACAAATTGTTCGTAGTTATTCGGATGGATCTTATGGTGCTCGTACTCTTAGCGACCCTGATGTTCATAAGTTACATCAGCTTTCTCTTGATGATAAGGATCTTGCGAACATCGTTCTTCATGCAAATTTGGTATACGAATCACTCGCCTCAGAAACAAACGAAGAAGAATGTTCTTCCCAAGGGAATAATAGTTCAAGAATGTTTCAAATTTACAAGGAAATTGCATCCCATCATCAAGGAAACTCATCCATTACATCTTACATTACAAAGCTGAAGGCTTTATGGGATGAACTCGAGGCCTACATTGACACCCCCAAATGTTCTTGCGGTTCAACACAGAAACAGAGTGAGGAAATTGAAAGGGAAAAAGTCATGCAATTTCTTATAGGATTAAACGATTCTTATTCCACCATTTGTGCTCAAATTCTTCATATGAAGCCATTTCCAACGGTGGAAAAAGCTTGTTGTGCAATACTTCGTGAAGAAAAACGCAGGGAATTGGTGTTGTCATTGGAGATTGTTGCGGCCAAAGTGATCCAAAACAATTGGCTTCTTCAAAATGGTCATTCGATCAATGGTGATAATGAAGAAGTTGATCATATGAATCTTCAGGACCTGAAAGCTGATCAAAACGAAGCTATGAGTATTCCCATTGAGCCATTGCTCATAGACCTTGGCTCTCCTGTTCGATGTTGA

Protein sequence

MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQPTVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRPTKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSDGSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC

Homology

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BLAST of Carg06838 vs. NCBI nr
Match: KAG7012356.1 (hypothetical protein SDJN02_25108, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 777.7 bits (2007), Expect = 4.8e-221
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD
Sbjct: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240
           GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF
Sbjct: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240

Query: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL 300
           QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL
Sbjct: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL 300

Query: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360
           IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG
Sbjct: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360

Query: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 404
           HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC
Sbjct: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 403

[Close]

BLAST of Carg06838 vs. NCBI nr
Match: KAG6573173.1 (hypothetical protein SDJN03_27060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 775.4 bits (2001), Expect = 2.4e-220
Identity = 401/403 (99.50%), Postives = 403/403 (100.00%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD
Sbjct: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240
           GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF
Sbjct: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240

Query: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL 300
           QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGST+KQSE+IEREKVMQFL
Sbjct: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTEKQSEQIEREKVMQFL 300

Query: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360
           IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG
Sbjct: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360

Query: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 404
           HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC
Sbjct: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 403

[Close]

BLAST of Carg06838 vs. NCBI nr
Match: XP_022954810.1 (serine/arginine repetitive matrix protein 1-like [Cucurbita moschata])

HSP 1 Score: 766.1 bits (1977), Expect = 1.5e-217
Identity = 399/403 (99.01%), Postives = 401/403 (99.50%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPIT PPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD
Sbjct: 121 TKPIT-PPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240
           GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASET EEECSSQGNNSSRMF
Sbjct: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETKEEECSSQGNNSSRMF 240

Query: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL 300
           QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGST+KQSE+IEREKVMQFL
Sbjct: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTEKQSEQIEREKVMQFL 300

Query: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360
           IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG
Sbjct: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360

Query: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 404
           HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC
Sbjct: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 402

[Close]

BLAST of Carg06838 vs. NCBI nr
Match: XP_023542694.1 (uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 764.6 bits (1973), Expect = 4.2e-217
Identity = 396/403 (98.26%), Postives = 399/403 (99.01%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPIN NELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINANELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKL PSRPAAPSPNERKLDTKTAPKTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLVPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD
Sbjct: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240
           GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASET EEECSSQGNNSSRMF
Sbjct: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETKEEECSSQGNNSSRMF 240

Query: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL 300
           QIYKEIASHHQGNSSITSYITKLKALWDELEAYID PKCSCGSTQKQSEEIEREKVMQFL
Sbjct: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDIPKCSCGSTQKQSEEIEREKVMQFL 300

Query: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360
           IGL+DSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG
Sbjct: 301 IGLDDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360

Query: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 404
           HSINGDNEEVDHMNLQ+LKADQNEAMS+PIEPLLIDLGSPVRC
Sbjct: 361 HSINGDNEEVDHMNLQELKADQNEAMSVPIEPLLIDLGSPVRC 403

[Close]

BLAST of Carg06838 vs. NCBI nr
Match: XP_022994450.1 (sporozoite surface protein 2-like [Cucurbita maxima])

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-88
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPS+PNYMSPRRRPTTPINPNELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSKPNYMSPRRRPTTPINPNELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKL PSRPAAPSPNE+KLDTKT  KTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLVPSRPAAPSPNEKKLDTKT--KTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPITPPPSKSN KGA+GSGSRSDFSRAKPSDS KG+PKNLRSGRL+DQQDEQIVRSYSD
Sbjct: 121 TKPITPPPSKSNVKGATGSGSRSDFSRAKPSDSHKGSPKNLRSGRLSDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDP 192
           GSYGA TLSDP
Sbjct: 181 GSYGAHTLSDP 189

[Close]

BLAST of Carg06838 vs. ExPASy TrEMBL
Match: A0A6J1GTG4 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456959 PE=4 SV=1)

HSP 1 Score: 766.1 bits (1977), Expect = 7.1e-218
Identity = 399/403 (99.01%), Postives = 401/403 (99.50%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPIT PPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD
Sbjct: 121 TKPIT-PPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSRMF 240
           GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASET EEECSSQGNNSSRMF
Sbjct: 181 GSYGARTLSDPDVHKLHQLSLDDKDLANIVLHANLVYESLASETKEEECSSQGNNSSRMF 240

Query: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTQKQSEEIEREKVMQFL 300
           QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGST+KQSE+IEREKVMQFL
Sbjct: 241 QIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGSTEKQSEQIEREKVMQFL 300

Query: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360
           IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG
Sbjct: 301 IGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNG 360

Query: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 404
           HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC
Sbjct: 361 HSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVRC 402

[Close]

BLAST of Carg06838 vs. ExPASy TrEMBL
Match: A0A6J1K179 (sporozoite surface protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111490168 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQP 60
           MVRGIISPPRSRSSPRESRPFNNNGATNPPS+PNYMSPRRRPTTPINPNELRTHRKEPQP
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSKPNYMSPRRRPTTPINPNELRTHRKEPQP 60

Query: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRP 120
           TVVKRPTKPTDRSSNPPRIDPSRPNSKL PSRPAAPSPNE+KLDTKT  KTTTRFSSPRP
Sbjct: 61  TVVKRPTKPTDRSSNPPRIDPSRPNSKLVPSRPAAPSPNEKKLDTKT--KTTTRFSSPRP 120

Query: 121 TKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSD 180
           TKPITPPPSKSN KGA+GSGSRSDFSRAKPSDS KG+PKNLRSGRL+DQQDEQIVRSYSD
Sbjct: 121 TKPITPPPSKSNVKGATGSGSRSDFSRAKPSDSHKGSPKNLRSGRLSDQQDEQIVRSYSD 180

Query: 181 GSYGARTLSDP 192
           GSYGA TLSDP
Sbjct: 181 GSYGAHTLSDP 189

[Close]

BLAST of Carg06838 vs. ExPASy TrEMBL
Match: A0A6J1C5Z8 (uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008588 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 219/428 (51.17%), Postives = 272/428 (63.55%), Query Frame = 0


Query: 2   VRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEPQPT 61
           +RG+ISPPRSRSSPR+ RP +NNGA NPPSRPNYMSPRRRPTT       +THRK P  T
Sbjct: 49  LRGLISPPRSRSSPRDFRP-HNNGAPNPPSRPNYMSPRRRPTT-AEQQHTQTHRK-PSAT 108

Query: 62  VVKRPTKPTDRSSNPPRIDPS-RPNSKLAPSRPAAPSP--NERKLDTKTAPKTTTRFSSP 121
             +   K      +PPRI PS +P + + PSR   P+   N++KLDTKT PK        
Sbjct: 109 ATRATKK------SPPRIRPSPKPTAPIVPSRRPNPNDLHNQKKLDTKTTPK----IGGA 168

Query: 122 RPTKPITPPPSKSNG----KG----------------ASGSGSRSDFSRAKPSDSQKGTP 181
           +P+ P T P    NG    +G                A  S SRSD   A  S S K  P
Sbjct: 169 KPSSPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSDSPAANSSPSSKHLP 228

Query: 182 KNLRSGRLNDQQDEQIVRSYSDGSYGARTLSDPDVHK-LHQLSLDDKDLANIVLHANLVY 241
            +  S + +D ++      YS G+Y    L+DP ++  L +LS+D KDLA+I+LHAN +Y
Sbjct: 229 -SPGSAQHHDMKNHS---PYSGGTY--TPLADPQLNNHLQRLSIDGKDLASIILHANSIY 288

Query: 242 ESLASETNEEECSSQGNNSSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYI-DT 301
           ES+ S+T EE   S   N+ R+FQIYK+IASH Q NSS+TSY TKLK LWDELE Y  D 
Sbjct: 289 ESIGSDTMEESFQS---NAPRIFQIYKDIASHRQENSSVTSYFTKLKILWDELETYSDDV 348

Query: 302 PK-CSCGSTQKQSEEIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEK 361
           P+ CSCG+ +K S  +EREKVMQFL+GLN+SYSTIC QIL ++PFPT+EKA   I+REEK
Sbjct: 349 PQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEKAYSIIIREEK 408

Query: 362 RRELVLSLEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLI 404
           R ELV SLE+VAAKV++N WLLQN  S NG ++ + H  +     D  E  S P E LLI
Sbjct: 409 RMELVTSLEMVAAKVMENKWLLQNDQSSNGYDDGI-HEEVNGNTEDNVEIPSFPNESLLI 453

[Close]

BLAST of Carg06838 vs. ExPASy TrEMBL
Match: A0A6J1C7L7 (uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008986 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-39
Identity = 142/338 (42.01%), Postives = 183/338 (54.14%), Query Frame = 0


Query: 3   RGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTP--INPNELRTHRKEPQP 62
           RG+ISPP+SR S  ES    NN A NPPS PNYMS  RR T    +NP + +T     +P
Sbjct: 7   RGLISPPKSRFSVTES-DSQNNAAANPPSMPNYMSATRRSTAARVVNPKQQQT--THTKP 66

Query: 63  TVVKRPTKPTDRSS-NPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPR 122
           T      + T  SS  P  + PSR     AP+ P   + N     T  A  TT+R S+  
Sbjct: 67  TFGSNAIRATKNSSPKPTPVVPSRRRPTWAPNNPNGHNDNSTTKLT-IAKITTSRNSNVN 126

Query: 123 PTKPITPPPSKSNGKGASGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYS 182
             +     P+  +    S  G                      SG   D  +  I     
Sbjct: 127 GVQQQPRGPTLISVASGSSHG----------------------SGHHQDANNNNIEGEEE 186

Query: 183 DGSYGARTLSDPDV-HKLHQLSLDDKDLANIVLHANLVYESLASETNEEECSSQGNNSSR 242
           D +     +  P V ++L QLS+D K  A +V  AN + ES+   T +EECS Q +N+ R
Sbjct: 187 DST---TVIGHPHVINQLQQLSIDGKHHAKMVFRANSMDESVGPYT-KEECSPQ-SNAER 246

Query: 243 MFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGST--QKQSEEIEREKV 302
           + +IYK+IASH QGNSSITSY TKL+ LW+ELE Y D P+C   S   QK S+ +EREKV
Sbjct: 247 ILEIYKDIASHRQGNSSITSYFTKLETLWEELETYSDLPQCCSYSATDQKPSKLVEREKV 306

Query: 303 MQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREE 335
           MQFL+GLNDSYSTIC+QIL ++PFPTVEKA   I+ +E
Sbjct: 307 MQFLVGLNDSYSTICSQILLIRPFPTVEKAYSIIIMQE 313

[Close]

BLAST of Carg06838 vs. ExPASy TrEMBL
Match: A0A6J1C6T8 (uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-36
Identity = 144/361 (39.89%), Postives = 192/361 (53.19%), Query Frame = 0


Query: 3   RGIISPPRSRSSPRESRPFNNNGATNPPSRPNY-MSPRRRPTTPINPNELRTHRKEPQPT 62
           RG+ISPPR+ S P       NN A NPP RPNY MSP  RPTT +NP+E   +    + T
Sbjct: 4   RGLISPPRAFSGP-------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLKAT 63

Query: 63  VVKRPTKPTDRSSNPPRIDPSRPNSKLAPSRPAAPSPNERKLDTKTAPKTTTRFSSPRPT 122
                      SSN  R       + +AP  P     +++KLD      ++T+ ++P PT
Sbjct: 64  ----------SSSNAIRA------THIAPPNPYDLQNHQKKLDHNNNNNSSTKTTAPPPT 123

Query: 123 K--------PITPPPSKSNGKGASGSGSRSD-----FSRAKPSDSQKGTPKNLRSGRLND 182
           +         +    +    KG + SGSRSD         K SDS   +  N  S   + 
Sbjct: 124 RHQRLRNGATLISNNTAPRPKGPTASGSRSDPLDANLIAPKFSDSPNNSSPNHLSIHGSG 183

Query: 183 QQDEQIVRSYSDGSYGARTLSDPDVHK-LHQLSL-----DDKDLA-------NIVLHANL 242
           Q+ + I    ++G     +L+ P ++  LH+LS      +D  +        +IVLH+  
Sbjct: 184 QR-QNISNVGNNGGTAYTSLAHPQLNNHLHKLSRGGSGGNDGKIPIYGGQDDHIVLHS-- 243

Query: 243 VYESLASETNEEECSSQGNNSSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYID 302
                       +CSSQ +N  R+F+IYK+IASH QGNSSITSY T+LK LWDELE Y D
Sbjct: 244 ------------KCSSQ-SNVPRIFEIYKDIASHRQGNSSITSYFTRLKTLWDELETYND 303

Query: 303 TPKCSCGSTQKQSEEIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEK 337
             +C C S     E +EREKVMQFL+GLND YSTIC QIL ++PFPTVEKA   ++REEK
Sbjct: 304 LSQC-CSS----GEHVEREKVMQFLVGLNDPYSTICHQILLIRPFPTVEKAYSIVIREEK 320

[Close]

BLAST of Carg06838 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-10
Identity = 30/96 (31.25%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 238 RMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCGS-----TQKQSEEIE 297
           +++Q+ + +A+  QG  S+  Y  KL  +W EL  Y   P+C CG      T++  E  E
Sbjct: 126 KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEARE 185

Query: 298 REKVMQFLIG--LNDSYSTICAQILHMKPFPTVEKA 327
           +E+  +FL+G  LN  +  +  +I+  KP P++ +A
Sbjct: 186 KEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEA 221

The following BLAST results are available for this feature:

BLAST of Carg06838 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012356.1	4.8e-221	100.00	hypothetical protein SDJN02_25108, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573173.1	2.4e-220	99.50	hypothetical protein SDJN03_27060, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954810.1	1.5e-217	99.01	serine/arginine repetitive matrix protein 1-like [Cucurbita moschata]	[more]
XP_023542694.1	4.2e-217	98.26	uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo]	[more]
XP_022994450.1	3.7e-88	94.24	sporozoite surface protein 2-like [Cucurbita maxima]	[more]

BLAST of Carg06838 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTG4	7.1e-218	99.01	serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1K179	1.8e-88	94.24	sporozoite surface protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111490168 PE...	[more]
A0A6J1C5Z8	1.9e-82	51.17	uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1C7L7	5.9e-39	42.01	uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1C6T8	2.1e-36	39.89	uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg06838 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	7.4e-10	31.25	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..49
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 200..345
None	No IPR available	PANTHER	PTHR34222:SF6	OS02G0671800 PROTEIN	coord: 200..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06838-RA	Carg06838-RA	mRNA