Carg06831 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06831
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 1525517 .. 1526773 (+)
RNA-Seq ExpressionCarg06831
SyntenyCarg06831
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTCTCTTATTCTGATTTGTGATTCGATTTATGATGTCCGGTTCTTTAATCTGACATGCGATTCGATATTAGATATTGATATTTGATACATTTGTTGGGTCAATTCAGCTGGTTGATAGCTAGAGTTGAAGAATCGAGTCTATTTTATGTGCATTCCAGGCGGTAAAGGAGACGCCTGATGCTATGCAAACTAAGCTAGTGTTGGAAAACTTCGGTACTATCGTATTAGCCTACTGAATTGGGTTTCTGTTCAAGTTTTTCCTGATTCGTTATATAACTGAAGGCTTGTTAGGTCTAATAATCTATCGTTTTTCCGTATGTTACTGTTCTGGTCTTCTAAAGATTCGAATGGGCGTTATGAAATGTTGGGCTTTTCGTTCATGCATATTGTTGCTCATTTACCGATTGTAATTTATTACCGAGAAGAATCTTGTTGCCAGAGTTTTCCTATATGAATAAATTTCTTGGAGATAAATATACATTCTACTTGAGGGTCAGACTGCACGATGAAATGGAACCTCGTTCAGTAGCTAAAATATAGATTTCTCCGAAAATTTGGAGTTTCGGAGTTCAGTTATACCCTGAAAAGCACCTTATTAGCCTTGTTAGTGCTTGCTGAACACTTTGGTTTTCTATTATGTGTCTGCACTATTTAAACCGCGGAGCCATGAGCTCTATCCCTCTTAAGTTTCAGAACAAAACTCTTCATTTCATTCACCAAAACCCCAGCAGCCCTTGTGTTTTGGATGCTAGAGAAAGTTAACTATGTTCCTGAACGTTCCTCTAGCATTCTCCAGCCACTGCTCGTATACTATTGCAGTGCACCGACTATCACAACCATCATTGCCCAATGGAAACTAAGTTACTGACATATATATGATATGAAGATAGATTTCTTTATCTTTCTCTATGTTATATTAGATATTGTATATATGTGCCATCATATACACATGCATTGTTGGTTATGTTATTTCTGTATTTTATATTTATTTGTAACCAGAATTGTTCTTTCAATAAAGCTGTGTAAATCTAGGGCATGGCCTCCTGGAATGAATCGAGGAAGCTGAATTTTCATCTCCTCTATGCTGTCTGAAAGTTGATTATTCCACCATACGTTTTTATGACTTTTGAATACATGAACCTCAGGTTTTCAGTTGAGGGCTGAGCTTTCCATTGTTGGGCAATATTACCATCTGCAAGATGATCAACTGAACCTGAAGCTATCTGTAACTTCAAGTGCATGCTTTGGTTGA

mRNA sequence

ATGCGTTCTCTTATTCTGATTTGTGATTCGATTTATGATGTCCGCTGGTTGATAGCTAGAGTTGAAGAATCGAGTCTATTTTATGCGGTAAAGGAGACGCCTGATGCTATGCAAACTAAGCTAGTGTTGGAAAACTTCGGTTTTCAGTTGAGGGCTGAGCTTTCCATTGTTGGGCAATATTACCATCTGCAAGATGATCAACTGAACCTGAAGCTATCTGTAACTTCAAGTGCATGCTTTGGTTGA

Coding sequence (CDS)

ATGCGTTCTCTTATTCTGATTTGTGATTCGATTTATGATGTCCGCTGGTTGATAGCTAGAGTTGAAGAATCGAGTCTATTTTATGCGGTAAAGGAGACGCCTGATGCTATGCAAACTAAGCTAGTGTTGGAAAACTTCGGTTTTCAGTTGAGGGCTGAGCTTTCCATTGTTGGGCAATATTACCATCTGCAAGATGATCAACTGAACCTGAAGCTATCTGTAACTTCAAGTGCATGCTTTGGTTGA

Protein sequence

MRSLILICDSIYDVRWLIARVEESSLFYAVKETPDAMQTKLVLENFGFQLRAELSIVGQYYHLQDDQLNLKLSVTSSACFG
Homology
[Close]
BLAST of Carg06831 vs. NCBI nr
Match: KAG7012349.1 (hypothetical protein SDJN02_25101, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MRSLILICDSIYDVRWLIARVEESSLFYAVKETPDAMQTKLVLENFGFQLRAELSIVGQY 60
          MRSLILICDSIYDVRWLIARVEESSLFYAVKETPDAMQTKLVLENFGFQLRAELSIVGQY
Sbjct: 1  MRSLILICDSIYDVRWLIARVEESSLFYAVKETPDAMQTKLVLENFGFQLRAELSIVGQY 60

Query: 61 YHLQDDQLNLKLSVTSSACFG 82
          YHLQDDQLNLKLSVTSSACFG
Sbjct: 61 YHLQDDQLNLKLSVTSSACFG 81

[Close]
BLAST of Carg06831 vs. NCBI nr
Match: KAG6573165.1 (hypothetical protein SDJN03_27052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 5.3e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 41 LVLENFGFQLRAELSIVGQYYHLQDDQLNLKLSVTSSACFG 82
          L+ +  GFQLRAELSIVGQYYHLQDDQLNLKLSVTSSACFG
Sbjct: 57 LLWDLHGFQLRAELSIVGQYYHLQDDQLNLKLSVTSSACFG 97

The following BLAST results are available for this feature:
BLAST of Carg06831 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012349.11.1e-36100.00hypothetical protein SDJN02_25101, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573165.15.3e-1087.80hypothetical protein SDJN03_27052, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg06831 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06831 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06831 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06831-RACarg06831-RAmRNA