Carg06801 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06801
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionthylakoid lumenal 17.9 kDa protein, chloroplastic
LocationCarg_Chr18: 1338595 .. 1340761 (-)
RNA-Seq ExpressionCarg06801
SyntenyCarg06801
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAACAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCCTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGTACGCTCTCAGTTCTTCTCTTTAATCTCTGCATTTCTTCTGTAATTTCTCTTGATTGTCTCGCTCACAGCATGAACTGTCGCCAATTTCTTTCTGCCCTAATTTTGCATTCGTTTTCTTAACTGAATCATTGATAATTTAGCTAAATGTTGTCTTGACATTGCAGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTATACTGGGAATCCGATTCAGGTTTTAGTTCGCTTAAAGCTCTGTATCACTTGCTTGAATGCTGGTTTACGTTAGTGGCTTCTTATAGTGTTGTCTTTCATGATTCTGCTCTACTTCGTTTATTTGCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTAATTGAACTGAAATTATCAATAGTTTATTTGAAATTTACATTACAAATTGATATACCTCCTTATGTTCTAATTGAACTGCTGAGATAGAAATGAGAATGGACTCTGTTTATTAGTGAGCCAACCCATCTGGCTTGTTCTTTTGAATTTCGTAGTGTTTTGACATAGTGACAGAAGTGAATCCTTGTTTTGATCCCGAAACACTTAAGAACGTAGTTAATAGGTCCTTAAACTTTCAAGGTGACATCTCGTAAGTTTCTAAACCGTAAAAAGTGTCTAATGAATGGAACGGTTCACGTTTCACGTTTCAAGTTTGTGTTTAAACTTTAAAAGTCTCGAAAATCATGTACATTTGGCACAAAAGCGAAAGTTTGTTTGTTACCTTTTAAATACAAAATCACTTTTAGTTCATAAGTGTGAGATCCCACGTCGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGAGTGTGGAAACCTCTTCCTAGTAGACACGTTTTAAAATTGTGAGGTTGACGGCAATATGTAACGGGTCATAGCGGATAATATCTGCTAGCAGTGGGCTTGGGTTGTTACAAATGGTATCAGAGCCAAACACTGGGAGGTGTGCTAGCAAGGACGCTGGGTCCCAAGGGTGGTAGATTCTGAGACCCCACATTGGTTGGAGAGGAGAACGAAACATTCCTTATAAAGATGTGGAAACCTCTCTCTAGCAGACGTGTTTTAAAACTGTGAGGCTGATGCCGATACGTAACGGGTCAAAGCGGATAATATCTGTTAGCGGTGGCCTTGAGCTATTACAATAAGCCTATTAAATGTTTTTGTAGTTCAAGAACTCATTAGAAGGCATAAATTTCATACAATTTAGCTTGAATCCCATGGGATGTCACTTCCTCTCGTGTAGATCTCATGTTAATATCTCGAGCGTAACGCATAAGATAGAGATCCTTATACAAGAACATGCAGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGAGGAGCTCATATGTATGATCAGCTCGAGTTTAGCTCGGTTCAATTGGTTAAGACATCTTCCAAAAGTTGTATTACTATTTTTGACATTTGATTCATGTTTCAAAACTACCCTTGAAGTGAAAATACACGTCGGAATGAATGTCAGGTTTTTCAAACTG

mRNA sequence

ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAACAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCCTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTATACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAATCCAAATCCTGTTTGTTTCTTCTATATTCTTTGTTTTCTTCCCATTCCTTTGTAGTCACTACACTTGAGGAGCTCATATGTATGATCAGCTCGAGTTTAGCTCGGTTCAATTGGTTAAGACATCTTCCAAAAGTTGTATTACTATTTTTGACATTTGATTCATGTTTCAAAACTACCCTTGAAGTGAAAATACACGTCGGAATGAATGTCAGGTTTTTCAAACTG

Coding sequence (CDS)

ATGAGTTCGCTCCATTTTCGCCCCGCCCTGGTTTCGCCATGGAAGAAGAAGAAGAACAACAACCAGTTCCTCTCTGCCGTCCTCAATCGAACCTCTCCTCCTTCCATGGCGGCTCTTCCAAATCCAAACCACAAACCAATTTTCATCTCTCATCTCCTTTCTTTCGCCCTCTCCATAACCCTTACTTCGCCATTTCCTTCCCTCGCAATCCCTTCCTTCAACTCCCTCTCCTCTCCCCTTTCTCCCACCACTCCCTTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGTAAGATTAGGCCCTGTCCTTCAACCAATCCGTCGTGTGTTTCTACAAATCCCAAATCGTCATCGTTTGCTTTCCCTTTAAGCATTCCTGAGAGTTATACTGGGAATCCGATTCAGAAGCTGCAGGAAGTGATCCTTGAAACGCAGAGGAATGCAAAGATTCAGATGGTGGAAGATACCCCATATGGTCAGTACATGGAAGCTGAGGTTGATGGGAACTTTGGGCGGGACGTGATTGAGTTTTTGGTGAGAGGAGATGTGGCTGCTTACAGGATAATGGCAGCAAAAGTGACTTATGTGTATCCTTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGCATGAAGAAGATCATAGAGGAGTTGGATTGGTATTCTCCAACCTTTGAATCTATGGTTGACTAA

Protein sequence

MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Homology
[Close]
BLAST of Carg06801 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_022955221.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 459.9 bits (1182), Expect = 1.3e-125
Identity = 231/234 (98.72%), Postives = 232/234 (99.15%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKK NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.0 bits (1177), Expect = 4.9e-125
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKK NNNQFLSAVLNRTSPPSMAALPN NHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: XP_022994453.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 6.4e-125
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK  NNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. NCBI nr
Match: KAG6573135.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.8 bits (1166), Expect = 9.3e-124
Identity = 230/235 (97.87%), Postives = 231/235 (98.30%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKK-NNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSI 60
           MSSLHFRPALVSPWKKKK NNNQFLSAVLNRTSPPSMAALPNP HKPIFISHLLSFALSI
Sbjct: 1   MSSLHFRPALVSPWKKKKNNNNQFLSAVLNRTSPPSMAALPNPKHKPIFISHLLSFALSI 60

Query: 61  TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSS 120
           TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSS
Sbjct: 61  TLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSS 120

Query: 121 SFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180
           SFAFPLSIPES+TGNPIQKLQEVILETQ NAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF
Sbjct: 121 SFAFPLSIPESFTGNPIQKLQEVILETQSNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEF 180

Query: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 LVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235

[Close]
BLAST of Carg06801 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.6e-64
Identity = 132/206 (64.08%), Postives = 163/206 (79.13%), Query Frame = 0 

Query: 28  LNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPSTNP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

[Close]
BLAST of Carg06801 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.3e-126
Identity = 231/234 (98.72%), Postives = 232/234 (99.15%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKK NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAF LSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. ExPASy TrEMBL
Match: A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.1e-125
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK  NNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

[Close]
BLAST of Carg06801 vs. ExPASy TrEMBL
Match: A0A6J1GUJ9 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 231/242 (95.45%), Postives = 232/242 (95.87%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKKKK NNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPY--------GQYMEAEVDGNF 180
           FAF LSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPY        GQYMEAEVDGNF
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAGQYMEAEVDGNF 180

Query: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 235
           GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM
Sbjct: 181 GRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESM 240

[Close]
BLAST of Carg06801 vs. ExPASy TrEMBL
Match: A0A6J1JVV7 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 229/247 (92.71%), Postives = 230/247 (93.12%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
           MSSLHFRPALVSPWKK  NNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT
Sbjct: 1   MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
           LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120

Query: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPY-------------GQYMEAE 180
           FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPY             GQYMEAE
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYEILIQEHAFMIITGQYMEAE 180

Query: 181 VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP 235
           VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP
Sbjct: 181 VDGNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSP 240

[Close]
BLAST of Carg06801 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 198/237 (83.54%), Postives = 214/237 (90.30%), Query Frame = 0 

Query: 1   MSSLHFRPALVSPWKKKKNN---NQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFAL 60
           MSSL FRP LVSPWKKK NN   NQ+ S V    S PSM+AL N NHKPIF+SHLLSFAL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPV----SVPSMSALQNVNHKPIFLSHLLSFAL 60

Query: 61  SITLTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPK 120
           SITLTSPFPS+AIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPK
Sbjct: 61  SITLTSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPK 120

Query: 121 SSSFAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVI 180
           SSSFAFPL+IP++++GNPIQKLQE ILETQRN KIQMVEDTPYGQY+EAEVDGNFGRDVI
Sbjct: 121 SSSFAFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVI 180

Query: 181 EFLVRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 235
           EFLV+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++L WYSPTF+SM D
Sbjct: 181 EFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

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BLAST of Carg06801 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 245.0 bits (624), Expect = 6.1e-65
Identity = 132/206 (64.08%), Postives = 163/206 (79.13%), Query Frame = 0 

Query: 28  LNRTSPPSMAALPNPNHKPIFISHLLSFALSITLTSPFPSLAIPSFNSLSSPLSPTTPFS 87
           L+ TSPP ++ LP           L+SFAL+I+LTS  P+LAIPS +S S PL  TTPF+
Sbjct: 33  LSSTSPP-ISLLPK----------LISFALAISLTSFSPALAIPSLSS-SQPL--TTPFT 92

Query: 88  QSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESYTGNPIQKLQEVILETQ 147
           QSK +  GL NGKIRPCPSTNP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ
Sbjct: 93  QSKFVQTGLLNGKIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQ 152

Query: 148 RNAKIQMVEDTPYGQYMEAEVD-GNFGRDVIEFLVRGDVAAYRIMAAKVTYVYPFTTALG 207
           +N K  ++EDTPYG+Y+EAEV+ G F RDV+EFLV+ DV AYR MA KVT+VYPFTTA G
Sbjct: 153 KNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFG 212

Query: 208 DSKGQEERMKKIIEELDWYSPTFESM 233
           DSKGQEER+KK+I++L WY+PTFESM
Sbjct: 213 DSKGQEERLKKLIDQLGWYAPTFESM 224

The following BLAST results are available for this feature:
BLAST of Carg06801 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012320.11.1e-127100.00Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
XP_022955221.11.3e-12598.72thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita moschata... [more]
XP_023542750.14.9e-12598.29thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... [more]
XP_022994453.16.4e-12597.86thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita maxima][more]
KAG6573135.19.3e-12497.87Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
BLAST of Carg06801 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SW338.6e-6464.08Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
BLAST of Carg06801 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GT706.3e-12698.72thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... [more]
A0A6J1K5813.1e-12597.86thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... [more]
A0A6J1GUJ91.0e-12395.45thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita moscha... [more]
A0A6J1JVV71.9e-12292.71thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X1 OS=Cucurbita maxima... [more]
A0A5A7UK021.0e-10483.54Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of Carg06801 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24930.16.1e-6564.08thylakoid lumenal 17.9 kDa protein, chloroplast [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037734Thylakoid lumenal 17.9kDa proteinPANTHERPTHR36783THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTICcoord: 23..233

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06801-RACarg06801-RAmRNA