Carg06738 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06738
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 942912 .. 943897 (-)
RNA-Seq ExpressionCarg06738
SyntenyCarg06738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAATCGGTGCCTCCCTCGTCTCCTTCGCCTACGACGGCTTAGAATGCTCATCTTATCGCTCTCTTATACCTGTGTAAGGGTCTTGTATAAAGCCTTTCCAACGTAACATTTAGCAACAAATAAATCATTAACCCAACAAGTGCATATGCAAAATGGAATAATCTCAAATAGACGAAGAAAATTCAAGAATGTTCGAGCGTCTTCGTTCCTTCACCTATTTATTCCTTGATTATGCAGGAACCCCTAGTTTTCCTTTCTGATGGACCGAAAAGTTCTAGACCGTTCAATTCCATCACTAGCAGATATGGTTCTTTTTGGGTTTCCCTCAAAGTTTTTAAGACGCGTCTGACAAGGAGGGGTTTCTACACCCTTATAAATAATGCTCGTTCTCCTCCCAAACCAACGTGGGATCTCACAGAAAGTGATCTAATAGCTTGCATATATTAGTGCTGTACAGCACCCGGATGGAATTTTTGTGATCTAATAGCTTGCATATATTAGTGCTATACCCGGATGGAATTTTTGAGATGTAAATTCATCGGTATTAGTATTTTTATTAATGGTAATTTAAATGAAAATGATAATTATTTCCCCTTTAATTAATTACGGAATAAATAGATGGGCCTGGAGAAAGCCCAAATTTATAGATGGTGGCCCAAGTGGAAGCCCAGTAGTTCACTCGGTGGAAGAATCCGAGTATGGATTTTGGACTCAGTTCGGTCAACCCAATTTCCTAAACGGGTCATTAATTTCCCACTCGGAATAGCCATTAACGCTACCTTACCCTCTGGTTTCATTTGTGGCTTCCTTATCGTCTACAGTTCAGGTTCCTCAGAAACCTTCAATTCCTCATTCCAGGTTCCATCTTCCTCAATCCTCCGTCTCTTCTTCTCTTCCGTTTTCTATTTCCATATCTTTGATTGTCGGCGGGAAGGCTGTTGTTTCCATTTTGATCCTCTCTCTGTCGCTGCCGTACTAG

mRNA sequence

ATGGATGAAATCGGTGCCTCCCTCGTCTCCTTCGCCTACGACGGCTTAGAATGCTCATCTTATCGCTCTCTTATACCTGAACCCCTAGTTTTCCTTTCTGATGGACCGAAAAGTTCTAGACCGTTCAATTCCATCACTAGCAGATATGTTCAGGTTCCTCAGAAACCTTCAATTCCTCATTCCAGGTTCCATCTTCCTCAATCCTCCGTCTCTTCTTCTCTTCCGTTTTCTATTTCCATATCTTTGATTGTCGGCGGGAAGGCTGTTGTTTCCATTTTGATCCTCTCTCTGTCGCTGCCGTACTAG

Coding sequence (CDS)

ATGGATGAAATCGGTGCCTCCCTCGTCTCCTTCGCCTACGACGGCTTAGAATGCTCATCTTATCGCTCTCTTATACCTGAACCCCTAGTTTTCCTTTCTGATGGACCGAAAAGTTCTAGACCGTTCAATTCCATCACTAGCAGATATGTTCAGGTTCCTCAGAAACCTTCAATTCCTCATTCCAGGTTCCATCTTCCTCAATCCTCCGTCTCTTCTTCTCTTCCGTTTTCTATTTCCATATCTTTGATTGTCGGCGGGAAGGCTGTTGTTTCCATTTTGATCCTCTCTCTGTCGCTGCCGTACTAG

Protein sequence

MDEIGASLVSFAYDGLECSSYRSLIPEPLVFLSDGPKSSRPFNSITSRYVQVPQKPSIPHSRFHLPQSSVSSSLPFSISISLIVGGKAVVSILILSLSLPY
Homology
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BLAST of Carg06738 vs. NCBI nr
Match: KAG7012258.1 (hypothetical protein SDJN02_25010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MDEIGASLVSFAYDGLECSSYRSLIPEPLVFLSDGPKSSRPFNSITSRYVQVPQKPSIPH 60
           MDEIGASLVSFAYDGLECSSYRSLIPEPLVFLSDGPKSSRPFNSITSRYVQVPQKPSIPH
Sbjct: 1   MDEIGASLVSFAYDGLECSSYRSLIPEPLVFLSDGPKSSRPFNSITSRYVQVPQKPSIPH 60

Query: 61  SRFHLPQSSVSSSLPFSISISLIVGGKAVVSILILSLSLPY 102
           SRFHLPQSSVSSSLPFSISISLIVGGKAVVSILILSLSLPY
Sbjct: 61  SRFHLPQSSVSSSLPFSISISLIVGGKAVVSILILSLSLPY 101

The following BLAST results are available for this feature:
BLAST of Carg06738 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012258.11.7e-45100.00hypothetical protein SDJN02_25010, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06738 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06738 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06738 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06738-RACarg06738-RAmRNA