Carg06704 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06704
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 743800 .. 745286 (+)
RNA-Seq ExpressionCarg06704
SyntenyCarg06704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGGTGTTTGTTCTTGGAATCGCTCAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGATCCGCTTTGTTTCGGCCCGAAATAGTTAATAAGTTTAGCTCGATTAAGCGCAGTTTCTACTGCCATTAGTCAAGAAAATTAGACCTTCTCTTGGTTGCATTTTCTTAATGCACCATCCCAAGAAGGGTTCATCTTGGAAAGTGGAAAACATTTCCAATAGGTTCATGTTTGTTTGTATTATTCTGAAAACAAGCCTAACATAGTTATTTATTTATTTTCTCCATTCTTTAGTGTCTCATCATCTTCGTATTTTATTGTAGCTATCCCTTTCCCGGACAGCATTCAATGAAATTGGCGACATCGCCTTCGTTGAAAATTGACTTCCAGTTATAATCAAAATGATATGCGTTTTCGAATTTTCGTCTGGAAATCTTATGTTCTGTTAGGTTTCAGGATGCAATTCTTGTGAAAGTAAATGAATGCAAAGATAAATTCCAATCAGAGAAGTTGGCTTATCAAGTTCTGGATGGTGTTCTGGTACTTGTTCTATATCTTCCACTTGCTTCATGCCATATGATTTCTTAAGCCCCTCATGATCTTTTTCCCTTTTATCCAGCTGAACTATCTCTGGAAAATTAAGTTATGGGAGAAATCCAGGGAAAGTAGATGACAGTTGTGAATGGAATGGTTCAAAGTCAGCCAGTTTAGGTATTTCTGGTCATGGATTTGATTTTTTGATCTTTAAAGAAGGCTGTTGATGTTTTAAAGAAGGTTAACGATGTTTTGTTCGTTCGTTTGAATTGCGTTCAAATCAATTTAGATGGATTGAGTAAATGTTGGGATTGAAATTGATGCTAAATCTCGAACCTTATGCTTTGTACTTTTGTATAGCGTCTAAGATTTTGATGGTTCGACTAGTAAGGTTATGCTTCAACTGGTTTAAAATGAACCTTAAGCTCCGTACTTTCGTATAGCGTCTACGATTTTGATGGTTTGATTAGTAAGATTATGCTTGAATTGTTTTAAAATGTTCGGATTGAAACTGATGCTAAATTCTAAACCTTAAGCTTTGTACTTTTTGTACCCTGCAAAGCTTCTAAGATTTGGATGGTTTGACTAGTAAGAGTATGCTTGAATTTGTTTACAATGTTGGGATTGATATTGATACTAAACCGTGAACCTTATGCTCTGTACTTTCGTGTAGCGTCTAAGATTTTGATGGTTTGACCATCAAGATTATGCTCGAATTGGTTTAAAATGTTGGGATTGAAATTGATGCTAAACTTTGAACCTTAAGCTCGGTACTTTTGTATAGTGTCTAAGATTTTAATGGTTTAACTAGTTAGATTATACTCGTGTTGGGATCGGAATGCCACAAACCACTGATGCATCCAATTTTCTTTTAAGGCTTCTCTTCTTTGGCCATTGA

mRNA sequence

ATGTTGTGGTGTTTGTTCTTGGAATCGCTCAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGATGCAATTCTTGTGAAAGTAAATGAATGCAAAGATAAATTCCAATCAGAGAAGTTGGCTTATCAAGTTCTGGATGGTGTTCTGCTGAACTATCTCTGGAAAATTAAGTTATGGGAGAAATCCAGGGAAAATTATACTCGTGTTGGGATCGGAATGCCACAAACCACTGATGCATCCAATTTTCTTTTAAGGCTTCTCTTCTTTGGCCATTGA

Coding sequence (CDS)

ATGTTGTGGTGTTTGTTCTTGGAATCGCTCAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGATGCAATTCTTGTGAAAGTAAATGAATGCAAAGATAAATTCCAATCAGAGAAGTTGGCTTATCAAGTTCTGGATGGTGTTCTGCTGAACTATCTCTGGAAAATTAAGTTATGGGAGAAATCCAGGGAAAATTATACTCGTGTTGGGATCGGAATGCCACAAACCACTGATGCATCCAATTTTCTTTTAAGGCTTCTCTTCTTTGGCCATTGA

Protein sequence

MLWCLFLESLSLKRTFLPLRGSLEIMDAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWKIKLWEKSRENYTRVGIGMPQTTDASNFLLRLLFFGH
Homology
[Close]
BLAST of Carg06704 vs. NCBI nr
Match: KAG7012225.1 (hypothetical protein SDJN02_24977, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.0 bits (502), Expect = 3.8e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MLWCLFLESLSLKRTFLPLRGSLEIMDAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWK 60
          MLWCLFLESLSLKRTFLPLRGSLEIMDAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWK
Sbjct: 1  MLWCLFLESLSLKRTFLPLRGSLEIMDAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWK 60

Query: 61 IKLWEKSRENYTRVGIGMPQTTDASNFLLRLLFFGH 97
          IKLWEKSRENYTRVGIGMPQTTDASNFLLRLLFFGH
Sbjct: 61 IKLWEKSRENYTRVGIGMPQTTDASNFLLRLLFFGH 96

[Close]
BLAST of Carg06704 vs. NCBI nr
Match: KAG6573035.1 (E2F transcription factor-like E2FE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-15
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 27  DAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWKIKLWEKSREN 71
           DAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWKIKLWEKSRE+
Sbjct: 421 DAILVKVNECKDKFQSEKLAYQVLDGVLLNYLWKIKLWEKSRES 464

The following BLAST results are available for this feature:
BLAST of Carg06704 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012225.13.8e-47100.00hypothetical protein SDJN02_24977, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573035.12.2e-1597.73E2F transcription factor-like E2FE, partial [Cucurbita argyrosperma subsp. soror... [more]
BLAST of Carg06704 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06704 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06704 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06704-RACarg06704-RAmRNA