Carg06664 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06664
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr18: 536605 .. 537149 (-)
RNA-Seq Expression	Carg06664
Synteny	Carg06664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGGAGACCTAAAACCCTTTCGTCCTCTGCTGCATCCTCCTCTTCTTCACGCCGGCATCTCCTCCATTTCAGCAGCTTAGTGTCACCGCCTCCGCCGCCTCTCACCCGTTCAGTGCCGCCGCCGTCGTCATTTTTCTTCCGCTTGTGCTGTCGCAGCCTCTCTCCTAGAGAGTTGTATCGATCTTCTAGTTGTTACTGGTACTCTCCTAATCTCCATCTCTGTCTTTTTTCTCACTTGAAAAACTCAAATTAGGACTCGTCTAATGAAAGAAATGAGGATTTATTTTGATTTTACTGTACTAATATTCTATAACAGTAGCAGAATAGCAAAAGAAAAAAAAAATTAGTTGCTGTAAATTTGGACTTCACGAACTGCCATGAGTCGAAGTAATCAATGGCATTATCCAATTCTCTTTTTGAATCCCTAGCTTGTAGGAGTTGTTTTGATTGACAGAACAACCTCAACCAGATATATATTTGTACATTTCGGAGGAAGACGCAGATTTCACTTGCAGTCGTTGGCGTGAAATTAGGGAAGATTGA

mRNA sequence

AATGGGAGACCTAAAACCCTTTCGTCCTCTGCTGCATCCTCCTCTTCTTCACGCCGGCATCTCCTCCATTTCAGCAGCTTAGTGTCACCGCCTCCGCCGCCTCTCACCCGTTCAGTGCCGCCGCCGTCGTCATTTTTCTTCCGCTTGTGCTGTCGCAGCCTCTCTCCTAGAGAGTTGTATCGATCTTCTAAACAACCTCAACCAGATATATATTTGTACATTTCGGAGGAAGACGCAGATTTCACTTGCAGTCGTTGGCGTGAAATTAGGGAAGATTGA

Coding sequence (CDS)

AATGGGAGACCTAAAACCCTTTCGTCCTCTGCTGCATCCTCCTCTTCTTCACGCCGGCATCTCCTCCATTTCAGCAGCTTAGTGTCACCGCCTCCGCCGCCTCTCACCCGTTCAGTGCCGCCGCCGTCGTCATTTTTCTTCCGCTTGTGCTGTCGCAGCCTCTCTCCTAGAGAGTTGTATCGATCTTCTAAACAACCTCAACCAGATATATATTTGTACATTTCGGAGGAAGACGCAGATTTCACTTGCAGTCGTTGGCGTGAAATTAGGGAAGATTGA

Protein sequence

NGRPKTLSSSAASSSSSRRHLLHFSSLVSPPPPPLTRSVPPPSSFFFRLCCRSLSPRELYRSSKQPQPDIYLYISEEDADFTCSRWREIRED

Homology

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BLAST of Carg06664 vs. NCBI nr
Match: KAG7012185.1 (hypothetical protein SDJN02_24937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 6.4e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  NGRPKTLSSSAASSSSSRRHLLHFSSLVSPPPPPLTRSVPPPSSFFFRLCCRSLSPRELY 60
          NGRPKTLSSSAASSSSSRRHLLHFSSLVSPPPPPLTRSVPPPSSFFFRLCCRSLSPRELY
Sbjct: 1  NGRPKTLSSSAASSSSSRRHLLHFSSLVSPPPPPLTRSVPPPSSFFFRLCCRSLSPRELY 60

Query: 61 RSSKQPQPDIYLYISEEDADFTCSRWREIRED 93
          RSSKQPQPDIYLYISEEDADFTCSRWREIRED
Sbjct: 61 RSSKQPQPDIYLYISEEDADFTCSRWREIRED 92

The following BLAST results are available for this feature:

BLAST of Carg06664 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012185.1	6.4e-44	100.00	hypothetical protein SDJN02_24937, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg06664 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06664 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06664 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06664-RA	Carg06664-RA	mRNA