Carg06662 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06662
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	coiled-coil domain-containing protein 12-like
Location	Carg_Chr18: 529588 .. 532227 (-)
RNA-Seq Expression	Carg06662
Synteny	Carg06662

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTCTTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTGTAAGTATCTTGCGAGTATAATTTTTTCTCTCGCTTTTCCGCCTTCTTTGTGTTGCTCCTGCCGCTGTCTACTCTTCTTTCGCTTCCTTGTGATGAATTTTCGTCATCTATGGCTATCTCGAAGGTTAATTAGATGAAATATGTGAGTGTTGACTTTGCAAGTGACTTATAGCTGTTATTCCTCTCGAGTTTTTCCGTAAGTATCTTTCGTGTATAATTGTTTCTCTCGCTTTTCCGCCTTCTTTGTGGTGCTCCTTCCGCTGTCTACTCTTTCTTTCGCTTCCTTGTGACGATTTTTCGTAATCTATGGCTATCTCGAAGGTTAAATAGATGAAATATGACTTTGCAAATGACTTGTAATACCTTAGTCTTTCTTCAATTTCCATTTTGCGATTCCTTAGTCATACTTTCTTTATCGAGAACAGGCTAGAGTGATTTTTAGTTCTTTTCTTTTCAGATATTTTACGTACAATAGGCAATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATGTGAGTGTGTATCGTTTTTCTTCCACCAAAGATTAACTGCTGTACTAGAAGTTACTTTTTCTAGAAGTTTTTTGTTTCAATTTCTCGAGTAAGTCGAATACTAGTAATGATTATATTGCTGAAATTTTGAAATGTTTTTCTTCTATTCGTGGATCACTTTACTTGTAAGCAGGTTTGTATAGTACAGGTAGCTTCAATTTGATTTCTCTGACTGTAATATCCTCTCTATCCTCCTTTAGTTGTGCTTTTAAAGATCCAACCTATGATATCCCCTCTAACCTCCTTTAGTTGTGCTTTAAAAGATCCAATCTATGATATCCTCTTCAAATGTAGGTTCCTAAACTATATTTCTACTCCTTTACGATCTATAGATAAAAATCTTCAAGAATACAGAAACGTGAATGGAATTGAGAAAGTTCATGCACAATAATCCATTTAGGCTACATCAGTCTATAGAAAAAGTTATATTACTCATAGCTCCTTGAGACTGAGACACAAAACAAATATTCCATAGAAAATAACACTGTGGAGGAGATGAAGAGGAGAAAATAGTAGATCTCATCATACTTACCCACTCTGAATGTCTGTCTCCTCATAGGAATGGCGATGTCCTTCTTCCTCTGCCTTTAACCACCCTCATTTATCTTTATACTTATTGCCTGACCTTTTTACCTCCTATTTTAACCTCTCTCACTCCCTTTCTCTTCCTCTTTCTTTAGCCGCCCCTTTTATTTCTGTGTCCATAGTTTGACTATCTCTTTTCTTTTTTTTTTTTAGTTTATTTTATGGTGGAGTCCGTGCTGAATTTACATGCTGACATAGTGAGCCAAGTTCCTCTATAATCTGGCCTGGGACATGTTACACAGACAACTTGCATGCTGTGTGATCAGTGTGCCAAGCTCTCTAGATCTTGATTTGGGACTTATTACAATTGACAGCCTTAGTAGTAGTATCTGCATTATTGTGGCAGCAACGACAAAAGATTTTTTCCTTTCTTTAGTAAGTTTTGTTTTTCTGTTTGTAGACTAGAGTCATAAACGGCCACAATAGGTCCTTTTAGAAACTAAGCTGCAAAATTTATGTTAACATGATGCATGTGAAGCGTGTTCATAAAAGTATCCTCCCATCAATGAGATTTCTTTCAGTCTTTCTTTTTAATTATTTCTTTCGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTATAACATTTGTGCTTGTAGAGTTTAGGATGATGATAATGTGATGTGAATGATGGCGACATACAGCATAACTAAGCTTTTTTTATCTTTTAGGATATATTTGGTGGTTACCTTCGAAATGTTTCAATATGATTTGTCCCTTGCAAGGGGAAAATGTGTTACTATATAAATGACGTTCTTTTGTACATTGAATATCTGTTTAGTTTGATGTCATTTTCAACTCATTTGAAAAATTGGCGTTTTTTTTTTCTTTTTCTTGATTCACTATGACATTATCCTTTCTCAGTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAATTTTGTCAGTTTGACTTATGTGTGTGTGTGTGTTTAAACTGGACTATTTTTGGATATTAATCTGTTAACTAAATTCTATCGGCAAAATTATAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG

mRNA sequence

AGGGTTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTCTTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTTTCTTTTCTTTTCAGATATTTTACGTACAATAGGCAATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG

Coding sequence (CDS)

ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG

Protein sequence

MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE

Homology

[Close]

BLAST of Carg06662 vs. NCBI nr
Match: KAG7012183.1 (Coiled-coil domain-containing protein 12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLMGE
Sbjct: 121 LERRTQKALYKLMGE 135

[Close]

BLAST of Carg06662 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 2.8e-64
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGED+ENGAAADTEE NLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 8.1e-64
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 8   VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEI--NLGMKFRNYVPH 67
           +E+ A  R+ERL+ALR      +  D     GE Q      + EE+  + G++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALREKTGRKDRED-----GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 68  DKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 127
           D++L+  ++  A PV      K +   A   P ++E    N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 128 KLERRTQKALYKLMGE 136
           KLE+RTQ+A+ +L+ E
Sbjct: 131 KLEKRTQRAIAELIRE 141

[Close]

BLAST of Carg06662 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 8   VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENG--------AAADTEEINLGMKF 67
           +E+ A  R+ERL+ALR          EKT G +D+E+G           +  E +  ++ 
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDKEDGEPKTKHLREEEEEGEKHRELRL 70

Query: 68  RNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRD 127
           RNYVP D++L++ ++  A PV      K +   A   P ++E    N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 128 VQKKLDKLERRTQKALYKLMGE 136
           V KKL+KL++RTQ+A+ +L+ E
Sbjct: 131 VAKKLEKLKKRTQRAIAELIRE 141

[Close]

BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60
Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMKE 135

[Close]

BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.5e-58
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.5e-58
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMGE 136
           LERRTQKALYKLM E
Sbjct: 121 LERRTQKALYKLMEE 135

[Close]

BLAST of Carg06662 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 162.2 bits (409), Expect = 3.0e-40
Identity = 91/137 (66.42%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60
           MA+E++S+EQ AAAR+E L+ALRAAQEL           E +E+G     EE    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMGE 136
           DKLERRTQKA++KLM E
Sbjct: 121 DKLERRTQKAMHKLMEE 127

The following BLAST results are available for this feature:

BLAST of Carg06662 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012183.1	3.0e-66	100.00	Coiled-coil domain-containing protein 12 [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022955111.1	2.5e-65	99.26	coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112...	[more]
KAG6572999.1	2.5e-65	99.26	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]
XP_023542240.1	2.8e-64	97.78	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022994277.1	8.1e-64	97.04	coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_...	[more]

BLAST of Carg06662 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R344	3.1e-13	38.97	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]
Q8WUD4	1.3e-11	37.32	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]

BLAST of Carg06662 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GST8	1.2e-65	99.26	coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JYP1	3.9e-64	97.04	coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1DLK0	2.0e-60	91.85	coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=36...	[more]
A0A1S3ATB1	5.5e-58	89.63	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
A0A5D3BJ95	5.5e-58	89.63	Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Carg06662 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05070.1	3.0e-40	66.42	CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
IPR013169	mRNA splicing factor Cwf18-like	PFAM	PF08315	cwf18	coord: 8..133 e-value: 1.2E-34 score: 119.8
IPR013169	mRNA splicing factor Cwf18-like	PANTHER	PTHR31551	PRE-MRNA-SPLICING FACTOR CWF18	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06662-RA	Carg06662-RA	mRNA