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Carg06662 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGGGTTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTCTTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTGTAAGTATCTTGCGAGTATAATTTTTTCTCTCGCTTTTCCGCCTTCTTTGTGTTGCTCCTGCCGCTGTCTACTCTTCTTTCGCTTCCTTGTGATGAATTTTCGTCATCTATGGCTATCTCGAAGGTTAATTAGATGAAATATGTGAGTGTTGACTTTGCAAGTGACTTATAGCTGTTATTCCTCTCGAGTTTTTCCGTAAGTATCTTTCGTGTATAATTGTTTCTCTCGCTTTTCCGCCTTCTTTGTGGTGCTCCTTCCGCTGTCTACTCTTTCTTTCGCTTCCTTGTGACGATTTTTCGTAATCTATGGCTATCTCGAAGGTTAAATAGATGAAATATGACTTTGCAAATGACTTGTAATACCTTAGTCTTTCTTCAATTTCCATTTTGCGATTCCTTAGTCATACTTTCTTTATCGAGAACAGGCTAGAGTGATTTTTAGTTCTTTTCTTTTCAGATATTTTACGTACAATAGGCAATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATGTGAGTGTGTATCGTTTTTCTTCCACCAAAGATTAACTGCTGTACTAGAAGTTACTTTTTCTAGAAGTTTTTTGTTTCAATTTCTCGAGTAAGTCGAATACTAGTAATGATTATATTGCTGAAATTTTGAAATGTTTTTCTTCTATTCGTGGATCACTTTACTTGTAAGCAGGTTTGTATAGTACAGGTAGCTTCAATTTGATTTCTCTGACTGTAATATCCTCTCTATCCTCCTTTAGTTGTGCTTTTAAAGATCCAACCTATGATATCCCCTCTAACCTCCTTTAGTTGTGCTTTAAAAGATCCAATCTATGATATCCTCTTCAAATGTAGGTTCCTAAACTATATTTCTACTCCTTTACGATCTATAGATAAAAATCTTCAAGAATACAGAAACGTGAATGGAATTGAGAAAGTTCATGCACAATAATCCATTTAGGCTACATCAGTCTATAGAAAAAGTTATATTACTCATAGCTCCTTGAGACTGAGACACAAAACAAATATTCCATAGAAAATAACACTGTGGAGGAGATGAAGAGGAGAAAATAGTAGATCTCATCATACTTACCCACTCTGAATGTCTGTCTCCTCATAGGAATGGCGATGTCCTTCTTCCTCTGCCTTTAACCACCCTCATTTATCTTTATACTTATTGCCTGACCTTTTTACCTCCTATTTTAACCTCTCTCACTCCCTTTCTCTTCCTCTTTCTTTAGCCGCCCCTTTTATTTCTGTGTCCATAGTTTGACTATCTCTTTTCTTTTTTTTTTTTAGTTTATTTTATGGTGGAGTCCGTGCTGAATTTACATGCTGACATAGTGAGCCAAGTTCCTCTATAATCTGGCCTGGGACATGTTACACAGACAACTTGCATGCTGTGTGATCAGTGTGCCAAGCTCTCTAGATCTTGATTTGGGACTTATTACAATTGACAGCCTTAGTAGTAGTATCTGCATTATTGTGGCAGCAACGACAAAAGATTTTTTCCTTTCTTTAGTAAGTTTTGTTTTTCTGTTTGTAGACTAGAGTCATAAACGGCCACAATAGGTCCTTTTAGAAACTAAGCTGCAAAATTTATGTTAACATGATGCATGTGAAGCGTGTTCATAAAAGTATCCTCCCATCAATGAGATTTCTTTCAGTCTTTCTTTTTAATTATTTCTTTCGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTATAACATTTGTGCTTGTAGAGTTTAGGATGATGATAATGTGATGTGAATGATGGCGACATACAGCATAACTAAGCTTTTTTTATCTTTTAGGATATATTTGGTGGTTACCTTCGAAATGTTTCAATATGATTTGTCCCTTGCAAGGGGAAAATGTGTTACTATATAAATGACGTTCTTTTGTACATTGAATATCTGTTTAGTTTGATGTCATTTTCAACTCATTTGAAAAATTGGCGTTTTTTTTTTCTTTTTCTTGATTCACTATGACATTATCCTTTCTCAGTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAATTTTGTCAGTTTGACTTATGTGTGTGTGTGTGTTTAAACTGGACTATTTTTGGATATTAATCTGTTAACTAAATTCTATCGGCAAAATTATAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG AGGGTTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTCTTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTTTCTTTTCTTTTCAGATATTTTACGTACAATAGGCAATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE Homology
BLAST of Carg06662 vs. NCBI nr
Match: KAG7012183.1 (Coiled-coil domain-containing protein 12 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg06662 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]) HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Carg06662 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Carg06662 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 255.4 bits (651), Expect = 2.8e-64 Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of Carg06662 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 253.8 bits (647), Expect = 8.1e-64 Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2) HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13 Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11 Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64 Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60 Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 5.5e-58 Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0
BLAST of Carg06662 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 5.5e-58 Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0
BLAST of Carg06662 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). ) HSP 1 Score: 162.2 bits (409), Expect = 3.0e-40 Identity = 91/137 (66.42%), Postives = 104/137 (75.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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