Carg06659 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06659
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGEM-like protein 4 isoform X1
LocationCarg_Chr18: 505778 .. 507492 (+)
RNA-Seq ExpressionCarg06659
SyntenyCarg06659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATAAAACAGGAGAAGTTGTTGTTCAAAGCTGACGAAATTGCCTGGAATCTTGTTCGATGATTCCGCGCTATTTTAATTCCACTTGTTCAATGTCCTGATTCGAATTTTTCTCTTTCCAGAAAATAGAATTTTCGACGTACAAATTCTCCCGTTTCTTTCGATGGAAGTTAGAATTTCAAGGAGGAATTGATTTCATAAATTACTGGTCGATTCTTTGTGCTCTTCGTTCCGTTGGTCGTTTCTCGGTCGGAAGGCGATTCCGGCCGGTGGCCGCGGACCACGATTTCGAAGTCTTGGTGTTCGAAGCCCTCTAATGAACTCTTTCGATAAAACGCCTGAAGGGCGCTTACCTCTTTATTCCGATGGCTCTCCCTCTTCTTACGGTAATAATCAAATCTCCTCTCGATCTTGGCGCCGCTCTGTTCATCTAAATCGATGGCGAGTTCATTTTTGCAGGTAAAGATCATTCAAAATTGGGGCACAAGAAGCAATTAATCAGGAAACGAGGCGGATTTGTATTTCGAGTTTACGAGCATGGTAAGGTCGAAAGTTTTTGCTGTCCAAATTTATTGCACACCACCTGTTTGTAGAAATGCCACCTGAAATTTATCGCATATATTATGATTGAATCAGCGTAAACTTGTGTTTTTTTGTGAATCTGTAGTTAAATTGGGGCCTAAATTCTCGGTTACTGCCAGAGGAAAATTGAGATTAGGGGCAAAAATTATACGACAAGGTGGTAGAAAGAACATATTCAAACATGTTTTTGGGATTGTAGAAGGAGAAGAGCTTTTGAAGGCCTCTCAATGTTACTTATCAACAAGCGCAGGACCCATTGCAGGGCTTCTTTTCATGTCCACACACAGGGTTGCTTTCTGCAGTGAGCAAAGTATCACTTTCCCTTCACCAACTGGAGAACTGATCAAAACTCAGTACAAGGTAACCTTTAGATTTAAGCCTTCAGCTGTGGATCATAGGAGATTGCAAATAAATCATGTTTGATTTGATTTGATTTGATTTAACCATGTTCATAATAAAGTTTTGCGTTCAGAAAATGGAATTTAAAGCATCTTTGCTAGAAACTTAATGAACTTTTTGGCTGTTGATTTCAGAAAATGGAAAGTTTTAAAGATTTTAGGATTGGAATGGAAGATTCATGGATAGATACAGAATATTAAAGAAATCCCCAACTTTTTGTTGGAACAAAGTGATTGAACAAGCCAAAAGTCTCTGGAATCTTTCTGCTTAATACATATCCAGAATTTTGATGAAGGCATCTTTGAAACTTTTAAGCACCATGTGATGCAAAATTTCCATAAGATGCAAAATTTTTCGTTCGGCGTATTAGACCCCTGCTTTGAATTCTGACTTTGCCCGGAAAGTGAAACTCCAACCCAAATAGGGGAGGTGAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTAGAACATCTTTATTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAACTTCTCTAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTGGAACATCTTTAGCCATTGAAAGGTTCAAGAAGAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTAGCAACTAG

mRNA sequence

TCATAAAACAGGAGAAGTTGTTGTTCAAAGCTGACGAAATTGCCTGGAATCTTGTTCGATGATTCCGCGCTATTTTAATTCCACTTGTTCAATGTCCTGATTCGAATTTTTCTCTTTCCAGAAAATAGAATTTTCGACGTACAAATTCTCCCGTTTCTTTCGATGGAAGTTAGAATTTCAAGGAGGAATTGATTTCATAAATTACTGGTCGATTCTTTGTGCTCTTCGTTCCGTTGGTCGTTTCTCGGTCGGAAGGCGATTCCGGCCGGTGGCCGCGGACCACGATTTCGAAGTCTTGGTGTTCGAAGCCCTCTAATGAACTCTTTCGATAAAACGCCTGAAGGGCGCTTACCTCTTTATTCCGATGGCTCTCCCTCTTCTTACGGTAAAGATCATTCAAAATTGGGGCACAAGAAGCAATTAATCAGGAAACGAGGCGGATTTGTATTTCGAGTTTACGAGCATGCCATTGAAAGGTTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAACTTCTCTAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTGGAACATCTTTAGCCATTGAAAGGTTCAAGAAGAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTAGCAACTAG

Coding sequence (CDS)

ATGAACTCTTTCGATAAAACGCCTGAAGGGCGCTTACCTCTTTATTCCGATGGCTCTCCCTCTTCTTACGGTAAAGATCATTCAAAATTGGGGCACAAGAAGCAATTAATCAGGAAACGAGGCGGATTTGTATTTCGAGTTTACGAGCATGCCATTGAAAGGTTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAATTTCTCTAGAACATCTTTAGCCATTGAAAGGTTCAAGAACTTCTCTAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTGGAACATCTTTAGCCATTGAAAGGTTCAAGAAGAGAACATCTTTAGCCATTAAAAGGTTCAAGAATTTCTCTAGCAACTAG

Protein sequence

MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEHAIERFKNFSRTSLAIERFKNFSRTSLAIERFKNFSRTSLAIKRFKNFSGTSLAIERFKKRTSLAIKRFKNFSSN
Homology
[Close]
BLAST of Carg06659 vs. NCBI nr
Match: KAG7012180.1 (hypothetical protein SDJN02_24932 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEHAIERFKNFSR 60
           MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEHAIERFKNFSR
Sbjct: 1   MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEHAIERFKNFSR 60

Query: 61  TSLAIERFKNFSRTSLAIERFKNFSRTSLAIKRFKNFSGTSLAIERFKKRTSLAIKRFKN 120
           TSLAIERFKNFSRTSLAIERFKNFSRTSLAIKRFKNFSGTSLAIERFKKRTSLAIKRFKN
Sbjct: 61  TSLAIERFKNFSRTSLAIERFKNFSRTSLAIKRFKNFSGTSLAIERFKKRTSLAIKRFKN 120

Query: 121 FSSN 125
           FSSN
Sbjct: 121 FSSN 124

[Close]
BLAST of Carg06659 vs. NCBI nr
Match: KAG6572996.1 (GEM-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH
Sbjct: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 50

[Close]
BLAST of Carg06659 vs. NCBI nr
Match: XP_023541117.1 (GEM-like protein 4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.0 bits (258), Expect = 9.6e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE RLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH
Sbjct: 1  MNSFEKTPERRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 50

[Close]
BLAST of Carg06659 vs. NCBI nr
Match: XP_022994542.1 (GEM-like protein 4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE RLP+YSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFR+YEH
Sbjct: 1  MNSFEKTPERRLPIYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRIYEH 50

[Close]
BLAST of Carg06659 vs. NCBI nr
Match: XP_022955247.1 (GEM-like protein 4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE R+PLYSDGSPSSYGKDHSKLGHKKQLIRKRGG VFR+YEH
Sbjct: 1  MNSFEKTPERRVPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGIVFRIYEH 50

[Close]
BLAST of Carg06659 vs. ExPASy TrEMBL
Match: A0A6J1JW54 (GEM-like protein 4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490232 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE RLP+YSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFR+YEH
Sbjct: 1  MNSFEKTPERRLPIYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRIYEH 50

[Close]
BLAST of Carg06659 vs. ExPASy TrEMBL
Match: A0A6J1GT13 (GEM-like protein 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457264 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.7e-18
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE R+PLYSDGSPSSYGKDHSKLGHKKQLIRKRGG VFR+YEH
Sbjct: 1  MNSFEKTPERRVPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGIVFRIYEH 50

[Close]
BLAST of Carg06659 vs. ExPASy TrEMBL
Match: A0A6J1K5G6 (GEM-like protein 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490232 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE RLP+YSDGSPSSY  DHSKLGHKKQLIRKRGGFVFR+YEH
Sbjct: 1  MNSFEKTPERRLPIYSDGSPSSY--DHSKLGHKKQLIRKRGGFVFRIYEH 48

[Close]
BLAST of Carg06659 vs. ExPASy TrEMBL
Match: A0A6J1GTE8 (GEM-like protein 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457264 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 1  MNSFDKTPEGRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEH 51
          MNSF+KTPE R+PLYSDGSPSSY  DHSKLGHKKQLIRKRGG VFR+YEH
Sbjct: 1  MNSFEKTPERRVPLYSDGSPSSY--DHSKLGHKKQLIRKRGGIVFRIYEH 48

[Close]
BLAST of Carg06659 vs. ExPASy TrEMBL
Match: A0A5D3BH38 (GEM-like protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002760 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-11
Identity = 40/61 (65.57%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 1   MNSFDKTPEG-----------RLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYE 51
           M SFDKTP+              PLYSDGSPSS G D+SK GHKKQ IRKRGGFVFRVYE
Sbjct: 64  MKSFDKTPDRNSSFSEPVSSIHSPLYSDGSPSSSGNDNSKSGHKKQFIRKRGGFVFRVYE 123

The following BLAST results are available for this feature:
BLAST of Carg06659 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012180.11.7e-60100.00hypothetical protein SDJN02_24932 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6572996.13.9e-20100.00GEM-like protein 4, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023541117.19.6e-1996.00GEM-like protein 4 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022994542.12.1e-1892.00GEM-like protein 4 isoform X1 [Cucurbita maxima][more]
XP_022955247.11.4e-1790.00GEM-like protein 4 isoform X1 [Cucurbita moschata][more]
BLAST of Carg06659 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06659 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JW541.0e-1892.00GEM-like protein 4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490232 PE=3 S... [more]
A0A6J1GT136.7e-1890.00GEM-like protein 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457264 PE=3... [more]
A0A6J1K5G64.8e-1688.00GEM-like protein 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490232 PE=3 S... [more]
A0A6J1GTE83.1e-1586.00GEM-like protein 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457264 PE=3... [more]
A0A5D3BH384.6e-1165.57GEM-like protein 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of Carg06659 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06659-RACarg06659-RAmRNA