Carg06580 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06580
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 10844157 .. 10844642 (+)
RNA-Seq ExpressionCarg06580
SyntenyCarg06580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAAAGCAAGGAACAAGAATATTCTGTAAGGCAAGCAAAAGGCATTTAGTTGGGAAACGGCCAAACGGCCTTTCCTCGCAATGGAAGATAAGAGGCGAAAACGGAAACCGCCCAATTTCAGTACGTGAAAGAAACTGTGTTAGAAACTGCTTTGCACACATCTCCCACTACGACTACGTCTCTTCCAATTCCATTTCCAGTGCTTGCGTACTCTACTCCTCTAATCTACCTTTTTCTCCGCAGGTAAGTGAGGAATTCTTCGTGGGTTTTCGTCATACCCCTTTTCTTTTTTCTTCTCCGTTTCAATTTCTTAGTTTTCTTTCAATAATTCATCCACTCTGTTCGTAGAATCGAAGTGATCATTGTGTTTTCATTATAATTTAGAATCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGGGGTATACTGTTTATGTGCTTCTTTGTGTTTTTGGAGTTGGTATTCAAGCCTTACGCTGA

mRNA sequence

ATGAAGAAAAAGCAAGGAACAAGAATATTCTGTAAGGCAAGCAAAAGGCATTTAGTTGGGAAACGGCCAAACGGCCTTTCCTCGCAATGGAAGATAAGAGGCGAAAACGGAAACCGCCCAATTTCAGTACGTGAAAGAAACTGTGTTAGAAACTGCTTTGCACACATCTCCCACTACGACTACGTCTCTTCCAATTCCATTTCCAGTGCTTGCGTACTCTACTCCTCTAATCTACCTTTTTCTCCGCAGAATCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGGGGTATACTGTTTATGTGCTTCTTTGTGTTTTTGGAGTTGGTATTCAAGCCTTACGCTGA

Coding sequence (CDS)

ATGAAGAAAAAGCAAGGAACAAGAATATTCTGTAAGGCAAGCAAAAGGCATTTAGTTGGGAAACGGCCAAACGGCCTTTCCTCGCAATGGAAGATAAGAGGCGAAAACGGAAACCGCCCAATTTCAGTACGTGAAAGAAACTGTGTTAGAAACTGCTTTGCACACATCTCCCACTACGACTACGTCTCTTCCAATTCCATTTCCAGTGCTTGCGTACTCTACTCCTCTAATCTACCTTTTTCTCCGCAGAATCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGGGGTATACTGTTTATGTGCTTCTTTGTGTTTTTGGAGTTGGTATTCAAGCCTTACGCTGA

Protein sequence

MKKKQGTRIFCKASKRHLVGKRPNGLSSQWKIRGENGNRPISVRERNCVRNCFAHISHYDYVSSNSISSACVLYSSNLPFSPQNRGGRRSGFIALGYTVYVLLCVFGVGIQALR
Homology
[Close]
BLAST of Carg06580 vs. NCBI nr
Match: KAG7018429.1 (hypothetical protein SDJN02_20297, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.5e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKKKQGTRIFCKASKRHLVGKRPNGLSSQWKIRGENGNRPISVRERNCVRNCFAHISHYD 60
           MKKKQGTRIFCKASKRHLVGKRPNGLSSQWKIRGENGNRPISVRERNCVRNCFAHISHYD
Sbjct: 1   MKKKQGTRIFCKASKRHLVGKRPNGLSSQWKIRGENGNRPISVRERNCVRNCFAHISHYD 60

Query: 61  YVSSNSISSACVLYSSNLPFSPQNRGGRRSGFIALGYTVYVLLCVFGVGIQALR 115
           YVSSNSISSACVLYSSNLPFSPQNRGGRRSGFIALGYTVYVLLCVFGVGIQALR
Sbjct: 61  YVSSNSISSACVLYSSNLPFSPQNRGGRRSGFIALGYTVYVLLCVFGVGIQALR 114

[Close]
BLAST of Carg06580 vs. NCBI nr
Match: KAG6597679.1 (hypothetical protein SDJN03_10859, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-05
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 20  GKRPNGLSSQWKIRGENGNRPISVRERNCVRNCFAHISHYDYVSSNSISSACVLYSSNLP 79
           G  P G      IR ENGNRPISV ER CV  CFAHI HY +     +++  VL  SNLP
Sbjct: 66  GPSPKGFHHNGGIRAENGNRPISVCERRCVGKCFAHIRHYHF--HFPLNTIGVLAYSNLP 125

Query: 80  FSPQN 85
            S ++
Sbjct: 126 ISQRS 128

The following BLAST results are available for this feature:
BLAST of Carg06580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018429.12.5e-58100.00hypothetical protein SDJN02_20297, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597679.14.2e-0549.23hypothetical protein SDJN03_10859, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg06580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06580-RACarg06580-RAmRNA