Carg06483 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06483
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 10178633 .. 10179270 (-)
RNA-Seq ExpressionCarg06483
SyntenyCarg06483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGCTTATCTTATGAAATCTCACGATGCCTCAATAGTTACACATACAACTTGAATCAACATGAGCAATACAATGCATGCATTTGCGAAATCGATTCATCCAATGCTTATAACAAACAAATTCATGTGCGTGCATATCAGAATCCTAACATTTCCTACACTTAGGTTATACAACGCAGATAAAAAGATTTGATCTCTAATACGTCCATGTATGTTGAAGGAAGACTAATTAGCAATAATCCATCACCAAAAGAAAAACTGCAAGTTAATTAATAAAAATTGGCTTCTAATTCACAATCAGGCGGAACATACAAATCGGAACATATAAAATAAGAAGGAATGAGGAAAGAAACCTAAGAGTCATATCGCAAAATGCAAAATAGTCGAGATTCGATTTAGAAGAAGAAAAACAGGGAGCGGCAATACGGAATGGAGAGAAGAAAAAAAAAACAAGAAGAATACCGTGGACAGGACGGAGGGGAAGGGAATCTGGATTCTTTTGGAGCTCCTTGGATAAGAACGACGGTGAGATTCCGGTGTGCGAATGGCCGCGTTGGTGAATTTGATATTGAAGAAATGGAGACGGTGAAGAAGGTGAAGGCGGAGGCGAGGGAGGTAGAGTTCGTAAACGGCCGGTGA

mRNA sequence

GAGGCTTATCTTATGAAATCTCACGATGCCTCAATAGTTACACATACAACTTGAATCAACATGAGCAATACAATGCATGCATTTGCGAAATCGATTCATCCAATGCTTATAACAAACAAATTCATGTGCGTGCATATCAGAATCCTAACATTTCCTACACTTAGGGAGCGGCAATACGGAATGGAGAGAAGAAAAAAAAAACAAGAAGAATACCGTGGACAGGACGGAGGGGAAGGGAATCTGGATTCTTTTGGAGCTCCTTGGATAAGAACGACGGTGAGATTCCGGTGTGCGAATGGCCGCGTTGGTGAATTTGATATTGAAGAAATGGAGACGGTGAAGAAGGTGAAGGCGGAGGCGAGGGAGGTAGAGTTCGTAAACGGCCGGTGA

Coding sequence (CDS)

ATGAGCAATACAATGCATGCATTTGCGAAATCGATTCATCCAATGCTTATAACAAACAAATTCATGTGCGTGCATATCAGAATCCTAACATTTCCTACACTTAGGGAGCGGCAATACGGAATGGAGAGAAGAAAAAAAAAACAAGAAGAATACCGTGGACAGGACGGAGGGGAAGGGAATCTGGATTCTTTTGGAGCTCCTTGGATAAGAACGACGGTGAGATTCCGGTGTGCGAATGGCCGCGTTGGTGAATTTGATATTGAAGAAATGGAGACGGTGAAGAAGGTGAAGGCGGAGGCGAGGGAGGTAGAGTTCGTAAACGGCCGGTGA

Protein sequence

MSNTMHAFAKSIHPMLITNKFMCVHIRILTFPTLRERQYGMERRKKKQEEYRGQDGGEGNLDSFGAPWIRTTVRFRCANGRVGEFDIEEMETVKKVKAEAREVEFVNGR
Homology
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BLAST of Carg06483 vs. NCBI nr
Match: KAG7018332.1 (hypothetical protein SDJN02_20200 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MSNTMHAFAKSIHPMLITNKFMCVHIRILTFPTLRERQYGMERRKKKQEEYRGQDGGEGN 60
           MSNTMHAFAKSIHPMLITNKFMCVHIRILTFPTLRERQYGMERRKKKQEEYRGQDGGEGN
Sbjct: 1   MSNTMHAFAKSIHPMLITNKFMCVHIRILTFPTLRERQYGMERRKKKQEEYRGQDGGEGN 60

Query: 61  LDSFGAPWIRTTVRFRCANGRVGEFDIEEMETVKKVKAEAREVEFVNGR 110
           LDSFGAPWIRTTVRFRCANGRVGEFDIEEMETVKKVKAEAREVEFVNGR
Sbjct: 61  LDSFGAPWIRTTVRFRCANGRVGEFDIEEMETVKKVKAEAREVEFVNGR 109

The following BLAST results are available for this feature:
BLAST of Carg06483 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018332.11.2e-54100.00hypothetical protein SDJN02_20200 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg06483 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06483 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06483 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06483-RACarg06483-RAmRNA