Carg06415 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06415
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ubiquitin-like protein ATG12
Location	Carg_Chr14: 9575098 .. 9577091 (-)
RNA-Seq Expression	Carg06415
Synteny	Carg06415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTTTGATCGAAGTCGGAGACCGTACCCCACACAGAGGGGTGGCAATTCGTGCAGTTCACGGCGGAGGGAAACGATGGCTTCTATGGAGTCGTCTAGTTCTGCTAAGAAAGGTGAGCTTTAGAGGATGTATGAACAAACCATCTTCAATCAGGGTTTATTCTGCTATTTTTGATGAATCGAACTTTCAAACTTTATTCAATTTTCAGGCTTAGTTGATCGGATACAGAAGGAGAGTTCTTTTACATTGACCGTTTAATACGATTCTTTCCTAATGAGGTTTTCAATCAAGATTTATGGTTATTTATTTGGTTTTATTTTTGGTAGTGGTTGTTCTGCTGCGATCTATTGGGGATGCTCCCATTCTCAAACAAAACAAGTTTAAGGTTTGTATTACCGTAATTTTTGTCTTTCTATGGATTTAAAGTTGTAATGTGTGTTGTACTGTTTAAAATGTAAAATGGAAATCAAATCTTGATGCATGTGAAAACTTTTGGTAATTCGATTAGATCAAGATGAACTGAACTGTAAACGATTGATTCTCGTATCGTGTATGCTGACTGAATGAGACATAGATGAAGAAAACGACCATTGTAGGAGCTAAAAGGAATGAAGCTTAATCCTTGTACTTATGGTTTTCATGTGGCTAATAGCAGAAACTTTATTGTTTATGACAAATTGTGGAAATTTTCATAGAATAATTGATGAATTATGTATCATGATTAATTTGGGGAGGGTATATCCCTGCTATGCGGTGAGGGTTCTTAGAATGTGTGGTTTTGAAAAATTTTATACAGCGGCACCTCCTTTAAAGTTATCCTTTTGGAATTTTTTTTTCCTATATTTGTAAGTTTAGGGCAAATGTTCATTCACATATTGTATACATTTGACAGATGCCTGGAACAGACAAATTTATTAAAGTGATTGATTATATACGTCGGTCAATCCAACGGGACACCTTGGTATTCATCTGACTTCTGAAATAGTCTCTCTTTCATCTGCTCATTCTTAAGAAATTAATGACACTTCACCATGCTAATTGTTTCTATTCTTTGAAGTTTGTGTTTGTCAACAGTGCATTCTCACCTGGTCCAGATGAGACAGTTATTGATCTATATAATGTGAGTTGATATTGACTCATTTCTTCCATTTATGTTCAAGATGCGTTTGTATACTGTTTGAAATTTTCATTAACTTTTAGAATCAGAAAAGGAGGGGGGATTTTTTTAGAAGAATTGGTTGGAATTTATCTTAAAAAGATTCCATCTATTGGCTAGTCAAAAACTGCCATCTTAACTGAGGGGGTATCTTCATTGAAGGTGTAGTGTAGACTTCTGATGTTGATGTTGGTCATGAATCATTCTTGAAAATACCCATCATTATATATTCTAAGGAGGTGAAGGAAAAGGCTTAAGCAGTCAAGATTTGAAACCTTTCTGAAGCATGAATCCACAAGATCTCTTAGATTATCACCTTCTCTGAGGGCTATGCATGGATAAAATTATTCCCTGTTCATAGCAATTTCTCAATCTGTTTCTTTACCTAAGAATAAATATATGTTTTTTTTTCATATCCACACGAGTTTAAAGTTTTTCTTAACCAATCGTGTCTAGAGGTATCTTGTTCATTATCTTTTTTGTGTGTTTATTTGCAGAACTTTGGAATTGATGGGAAGTTGGTCGTAAATTATGCTTGCTCGATGGCTTGGGGATAATTTGCAGTGTGGTAATGTTTAGTGCTGAGGCTGTAAATAGTATATTGAACTGTTCATTCCAAGTACTGTGATTATAAGCTCATCCATTTCTTTTTTAAGAACCATAGTAGTAGATTTTCTTCCATATTTTAGGCTACTTTCCCGGATGGAAAAACAAACCAAGTCAAGTTCTAGAGTCGTACTCGTCAAGGACCAGAGTCTGTAATTATTTATTTGATCGACCTCGTTAATCAATTGTTTTAACATTGAATATGAAAGCCAAAGGATTTTTTTGTCTTTT

mRNA sequence

TTCTTTTGATCGAAGTCGGAGACCGTACCCCACACAGAGGGGTGGCAATTCGTGCAGTTCACGGCGGAGGGAAACGATGGCTTCTATGGAGTCGTCTAGTTCTGCTAAGAAAGTGGTTGTTCTGCTGCGATCTATTGGGGATGCTCCCATTCTCAAACAAAACAAGTTTAAGATGCCTGGAACAGACAAATTTATTAAAGTGATTGATTATATACGTCGGTCAATCCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCTGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTCGTAAATTATGCTTGCTCGATGGCTTGGGGATAATTTGCAGTGTGGTAATGTTTAGTGCTGAGGCTGTAAATAGTATATTGAACTGTTCATTCCAAGTACTGTGATTATAAGCTCATCCATTTCTTTTTTAAGAACCATAGTAGTAGATTTTCTTCCATATTTTAGGCTACTTTCCCGGATGGAAAAACAAACCAAGTCAAGTTCTAGAGTCGTACTCGTCAAGGACCAGAGTCTGTAATTATTTATTTGATCGACCTCGTTAATCAATTGTTTTAACATTGAATATGAAAGCCAAAGGATTTTTTTGTCTTTT

Coding sequence (CDS)

ATGGCTTCTATGGAGTCGTCTAGTTCTGCTAAGAAAGTGGTTGTTCTGCTGCGATCTATTGGGGATGCTCCCATTCTCAAACAAAACAAGTTTAAGATGCCTGGAACAGACAAATTTATTAAAGTGATTGATTATATACGTCGGTCAATCCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCTGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTCGTAAATTATGCTTGCTCGATGGCTTGGGGATAA

Protein sequence

MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Homology

[Close]

BLAST of Carg06415 vs. NCBI nr
Match: XP_022955552.1 (ubiquitin-like protein ATG12 [Cucurbita moschata] >XP_023526053.1 ubiquitin-like protein ATG12 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6581816.1 Ubiquitin-like protein ATG12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018264.1 Ubiquitin-like protein ATG12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 4.6e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. NCBI nr
Match: XP_022980759.1 (ubiquitin-like protein ATG12 [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MASMESS+S+KKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSNSSKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. NCBI nr
Match: XP_038878493.1 (ubiquitin-like protein ATG12 [Benincasa hispida])

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MAS ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. NCBI nr
Match: XP_004151012.1 (ubiquitin-like protein ATG12 [Cucumis sativus] >KGN59786.1 hypothetical protein Csa_001664 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-42
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. NCBI nr
Match: XP_008464001.1 (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+SA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. ExPASy Swiss-Prot
Match: Q1SF86 (Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 9.0e-36
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MA+ ES +S +KVVV LR+ GDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. ExPASy Swiss-Prot
Match: Q8S924 (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-35
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MASMESS-SSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFV 60
          MA+  SS SS +KVVV LR+ G APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+V
Sbjct: 1  MATESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYV 60

Query: 61 NSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          NSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 NSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of Carg06415 vs. ExPASy Swiss-Prot
Match: Q9LVK3 (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.3e-33
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 5  ESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFS 64
          ES +S +K+VV LR+ G APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFS
Sbjct: 4  ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFS 63

Query: 65 PGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          P PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 64 PNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Carg06415 vs. ExPASy Swiss-Prot
Match: A2YAG8 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-30
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 7  SSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPG 66
          ++  KKVVV  RS G+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of Carg06415 vs. ExPASy Swiss-Prot
Match: Q69NP0 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-30
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 7  SSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPG 66
          ++  KKVVV  RS G+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of Carg06415 vs. ExPASy TrEMBL
Match: A0A6J1GTZ1 (Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. ExPASy TrEMBL
Match: A0A6J1J054 (Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MASMESS+S+KKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASMESSNSSKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. ExPASy TrEMBL
Match: A0A0A0LIA6 (Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. ExPASy TrEMBL
Match: A0A1S3CKI1 (Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.7e-42
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+SA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. ExPASy TrEMBL
Match: A0A6J1DGR5 (Ubiquitin-like protein ATG12 OS=Momordica charantia OX=3673 GN=LOC111020917 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MAS ESSSS +KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MASKESSSSDRKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Carg06415 vs. TAIR 10
Match: AT1G54210.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 7.0e-36
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MASMESS-SSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFV 60
          MA+  SS SS +KVVV LR+ G APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+V
Sbjct: 1  MATESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYV 60

Query: 61 NSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          NSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 NSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of Carg06415 vs. TAIR 10
Match: AT3G13970.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 6.6e-34
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 5  ESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFS 64
          ES +S +K+VV LR+ G APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFS
Sbjct: 4  ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFS 63

Query: 65 PGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          P PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 64 PNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Carg06415 vs. TAIR 10
Match: AT1G54210.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 40/96 (41.67%), Postives = 44/96 (45.83%), Query Frame = 0


Query: 1  MASMESS-SSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFV 60
          MA+  SS SS +KVVV LR+ G APILKQ+KFK                           
Sbjct: 1  MATESSSPSSVRKVVVHLRATGGAPILKQSKFK--------------------------- 52

Query: 61 NSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
                           NFG DGKLVVNYACSMAWG
Sbjct: 61 -----------------NFGFDGKLVVNYACSMAWG 52

The following BLAST results are available for this feature:

BLAST of Carg06415 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955552.1	4.6e-45	100.00	ubiquitin-like protein ATG12 [Cucurbita moschata] >XP_023526053.1 ubiquitin-like...	[more]
XP_022980759.1	2.3e-44	97.89	ubiquitin-like protein ATG12 [Cucurbita maxima]	[more]
XP_038878493.1	2.1e-42	94.74	ubiquitin-like protein ATG12 [Benincasa hispida]	[more]
XP_004151012.1	6.2e-42	93.68	ubiquitin-like protein ATG12 [Cucumis sativus] >KGN59786.1 hypothetical protein ...	[more]
XP_008464001.1	1.4e-41	92.63	PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]	[more]

BLAST of Carg06415 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SF86	9.0e-36	74.74	Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1	[more]
Q8S924	9.9e-35	75.00	Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=...	[more]
Q9LVK3	9.3e-33	71.43	Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=...	[more]
A2YAG8	3.3e-30	67.42	Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=...	[more]
Q69NP0	3.3e-30	67.42	Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 P...	[more]

BLAST of Carg06415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTZ1	2.2e-45	100.00	Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 ...	[more]
A0A6J1J054	1.1e-44	97.89	Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV...	[more]
A0A0A0LIA6	3.0e-42	93.68	Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=...	[more]
A0A1S3CKI1	6.7e-42	92.63	Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1	[more]
A0A6J1DGR5	1.3e-40	91.58	Ubiquitin-like protein ATG12 OS=Momordica charantia OX=3673 GN=LOC111020917 PE=3...	[more]

BLAST of Carg06415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54210.1	7.0e-36	75.00	Ubiquitin-like superfamily protein	[more]
AT3G13970.1	6.6e-34	71.43	Ubiquitin-like superfamily protein	[more]
AT1G54210.2	1.6e-08	41.67	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 6..95 e-value: 1.6E-35 score: 123.5
None	No IPR available	PANTHER	PTHR13385:SF2	UBIQUITIN-LIKE PROTEIN ATG12B	coord: 4..95
None	No IPR available	CDD	cd01612	Ubl_ATG12	coord: 13..94 e-value: 4.06443E-39 score: 123.011
IPR007242	Ubiquitin-like protein Atg12	PFAM	PF04110	APG12	coord: 12..95 e-value: 1.4E-29 score: 102.3
IPR007242	Ubiquitin-like protein Atg12	PANTHER	PTHR13385	AUTOPHAGY PROTEIN 12	coord: 4..95
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 11..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06415-RA	Carg06415-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
biological_process	GO:0000422	autophagy of mitochondrion
biological_process	GO:0044804	autophagy of nucleus
biological_process	GO:0006501	C-terminal protein lipidation
cellular_component	GO:0034274	Atg12-Atg5-Atg16 complex
cellular_component	GO:0034045	phagophore assembly site membrane
cellular_component	GO:0005737	cytoplasm