Carg06412 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06412
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAB hydrolase-1 domain-containing protein
LocationCarg_Chr14: 9561642 .. 9563378 (+)
RNA-Seq ExpressionCarg06412
SyntenyCarg06412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAGCACCACAGCAGAAGCAAGAGCCAAGACGATGGCCAGTGGTCTCTGAGATGAGATCTGGTTCGTGTAAGCGCCATAGTTACTATCCATGGCTTTGAGTTTTATGAAGAAGGTTGCTTGTTGAGCAAAAACTAGATGGGAAACAAGAGATTTATATGGAGGAAAATGGTGGCATGGGTTAAGGAATCTATGTGGAAAGGCTCTTATCAGACGAGCATGGCTGTCTTAAAAGTGAAAAAGTGAACTACAATTGTAAAAAAGATCGCAAAAGTATATCATATGGGCAGGGGAAAAGTGTTCGGTTTGGAAGTAAGGTATCTTTTCATTGCCAATGTAATAGTATACATCGGTTAGACGTATGTAAAAAAAATTATAGCTTTAACGAATAGAATTCATATTGTAACGACTATTAGTAATTATACTGTAATAGTTCAAGCCCATCGCTAATATATATTGTCCGCTTTTGTTTGTAACATATCATCGTCAACCTCACAATTTTAAAATGAAGAGGTTTCAACATTTTTATAAGAAATGTTTCGTTCCTCTCTGTGGTTGGGGTCCACTGGGGGGCCAGCCTCCTCGCTGACATACTGCCTAGTGACTGGCTCTGGTACCATTTGTAACTGTCCAAACCCACTTCTAGCCGATATTGTCCACACCCTTTCGAGGAATGATTTGTTCCCATCTTCAACCAACGTGCGATCTTACAACCCACCTCTTTGGAGGTCAGCGTCCTCGTTGGCACACCGCCTAGTGTTTGGCTCTAATACCATTTGTAACAACTTAAACCCATTACTAAGTGTTTGGCTCTAATACCATTTGTAACAACTCAAACCCATTACTAAGTGTTTGGCTCTAATACCATTTGTAACAACTCAAACCCATTACTAACAGATATTGTCCATTTTGGCTTGTTACGTATCGTCGTCAGTTTTACAGTTTTAAAACGCATCTATGAGGAAGAGATTTCCACACCCTTACGAGGAATGTTCTATTCCCCTCTCCAACCGATCAACAAATAAACTATAATTCAAACACGGCCTCATTTTTCTTAATATCACATGAAGAACTTCATAACCCTTTTTCCCACTCAACCTTACTCCTTTTCAGCTGTTACACATACCACTTCTTATGAACACAAAGCCCCTGTTTTTCATACACATCACTCTGTTTCTCTCGCAAATAGTGATATCAGCTCCAGTGTCTTCTCCTTCTTTCTCTTCCATTTTTAATTTCCCATTTCCCATTTATCTTATTCCATTAGCATCCCATCCTCTCTCTCGCCATTTCAATACTCAAAACATGGTGGAAGCTCAACTTCAGGCTCTGCAACATGTCGCCAAGCCACGTTTAGGATGACAAAGACACAACAATGCAATTCTGGACATCCAAACAAACGAACCTAAACGAGCCCTGTCTTGTTCTTTGGGGAATTCCAAATGCCAATTCTTTTTCCAAGTTAGAGACTTGTCGTGAAGCTTCAATCTGTCCATACCCAGCTTGTGTTCCTTGGGGAATCTCACACCAACCAAACCAACACGTCGGATTTGTTCCAAGCGATAAGTGTAGGCGAAGTGATGAAGAGATTGGGTGTGGAGAAGTACAACGTAATGGGGATCAGCTATGGAGGGTACGTGGCATATCGAATGGCTGAGATTTATAAGGAAGTGATGAATGTAGTGATTGTGAGCTGTGAAATATGTAGTTGTGATGATCAAAAGGTAGAGTAG

mRNA sequence

ATGGTGAAAGCACCACAGCAGAAGCAAGAGCCAAGACGATGGCCAGTGGTCTCTGAGATGAGATCTGACGAGCATGGCTGTCTTAAAAGTGAAAAAGTGAACTACAATTGTAAAAAAGATCGCAAAAGTATATCATATGGGCAGGGGAAAAGTGTTCGGTTTGGAAGTAAGAGACTTGTCGTGAAGCTTCAATCTGTCCATACCCAGCTTGTGTTCCTTGGGGAATCTCACACCAACCAAACCAACACGTCGGATTTGTTCCAAGCGATAAGTGTAGGCGAAGTGATGAAGAGATTGGGTGTGGAGAAGTACAACGTAATGGGGATCAGCTATGGAGGGTACGTGGCATATCGAATGGCTGAGATTTATAAGGAAGTGATGAATGTAGTGATTGTGAGCTGTGAAATATGTAGTTGTGATGATCAAAAGGTAGAGTAG

Coding sequence (CDS)

ATGGTGAAAGCACCACAGCAGAAGCAAGAGCCAAGACGATGGCCAGTGGTCTCTGAGATGAGATCTGACGAGCATGGCTGTCTTAAAAGTGAAAAAGTGAACTACAATTGTAAAAAAGATCGCAAAAGTATATCATATGGGCAGGGGAAAAGTGTTCGGTTTGGAAGTAAGAGACTTGTCGTGAAGCTTCAATCTGTCCATACCCAGCTTGTGTTCCTTGGGGAATCTCACACCAACCAAACCAACACGTCGGATTTGTTCCAAGCGATAAGTGTAGGCGAAGTGATGAAGAGATTGGGTGTGGAGAAGTACAACGTAATGGGGATCAGCTATGGAGGGTACGTGGCATATCGAATGGCTGAGATTTATAAGGAAGTGATGAATGTAGTGATTGTGAGCTGTGAAATATGTAGTTGTGATGATCAAAAGGTAGAGTAG

Protein sequence

MVKAPQQKQEPRRWPVVSEMRSDEHGCLKSEKVNYNCKKDRKSISYGQGKSVRFGSKRLVVKLQSVHTQLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYKEVMNVVIVSCEICSCDDQKVE
Homology
BLAST of Carg06412 vs. NCBI nr
Match: KAG7018261.1 (hypothetical protein SDJN02_20129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MVKAPQQKQEPRRWPVVSEMRSDEHGCLKSEKVNYNCKKDRKSISYGQGKSVRFGSKRLV 60
           MVKAPQQKQEPRRWPVVSEMRSDEHGCLKSEKVNYNCKKDRKSISYGQGKSVRFGSKRLV
Sbjct: 1   MVKAPQQKQEPRRWPVVSEMRSDEHGCLKSEKVNYNCKKDRKSISYGQGKSVRFGSKRLV 60

Query: 61  VKLQSVHTQLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMA 120
           VKLQSVHTQLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMA
Sbjct: 61  VKLQSVHTQLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMA 120

Query: 121 EIYKEVMNVVIVSCEICSCDDQKVE 146
           EIYKEVMNVVIVSCEICSCDDQKVE
Sbjct: 121 EIYKEVMNVVIVSCEICSCDDQKVE 145

BLAST of Carg06412 vs. NCBI nr
Match: XP_038889078.1 (LOW QUALITY PROTEIN: lipase 1-like [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGV-EKYNVMGISYGGYVAYRMAEIYKEVMN 129
           L+F GESHTN+T+ SDLFQAI VG + ++ G  E Y+V+GISYGGYVAYRM  IY+EVM 
Sbjct: 89  LLFFGESHTNKTDMSDLFQAICVGGMNEKTGCGEXYSVVGISYGGYVAYRMXVIYEEVMK 148

Query: 130 VVIVSCEICSCDDQKVE 146
           VVIVSC ICS DDQKVE
Sbjct: 149 VVIVSCGICSNDDQKVE 165

BLAST of Carg06412 vs. NCBI nr
Match: GAV82711.1 (Abhydrolase_6 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 69  QLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIY-KEVM 128
           +L+F G+S TN+T+ SD+FQA  V E +K+LGV ++NV GISYGG+V YRMAEIY +E+ 
Sbjct: 114 ELLFFGKSCTNRTDRSDVFQAKCVMEGLKKLGVNRFNVFGISYGGFVTYRMAEIYGEEIQ 173

Query: 129 NVVIVSCEICSCDDQKVE 146
            V+IVSC IC  DDQK E
Sbjct: 174 KVMIVSCAICYSDDQKEE 191

BLAST of Carg06412 vs. NCBI nr
Match: EEF40992.1 (abhydrolase domain containing, putative [Ricinus communis])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYK-EVMN 129
           L+F G+S+TN+T+ SD+FQA    E +K+LGVEKYNV+GISYGGYVAY MAE +  EV  
Sbjct: 112 LLFFGDSYTNRTDRSDIFQAKCASEGLKKLGVEKYNVVGISYGGYVAYYMAENFNDEVKK 171

Query: 130 VVIVSCEICSCDDQKVE 146
           VVIVSC IC  ++Q+ E
Sbjct: 172 VVIVSCGICYTEEQREE 188

BLAST of Carg06412 vs. NCBI nr
Match: XP_015576092.1 (uncharacterized protein LOC8284649 [Ricinus communis])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYK-EVMN 129
           L+F G+S+TN+T+ SD+FQA    E +K+LGVEKYNV+GISYGGYVAY MAE +  EV  
Sbjct: 112 LLFFGDSYTNRTDRSDIFQAKCASEGLKKLGVEKYNVVGISYGGYVAYYMAENFNDEVKK 171

Query: 130 VVIVSCEICSCDDQKVE 146
           VVIVSC IC  ++Q+ E
Sbjct: 172 VVIVSCGICYTEEQREE 188

BLAST of Carg06412 vs. ExPASy TrEMBL
Match: A0A1Q3CRG1 (Abhydrolase_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26162 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.6e-16
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 69  QLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIY-KEVM 128
           +L+F G+S TN+T+ SD+FQA  V E +K+LGV ++NV GISYGG+V YRMAEIY +E+ 
Sbjct: 114 ELLFFGKSCTNRTDRSDVFQAKCVMEGLKKLGVNRFNVFGISYGGFVTYRMAEIYGEEIQ 173

Query: 129 NVVIVSCEICSCDDQKVE 146
            V+IVSC IC  DDQK E
Sbjct: 174 KVMIVSCAICYSDDQKEE 191

BLAST of Carg06412 vs. ExPASy TrEMBL
Match: B9S5Q5 (Abhydrolase domain containing, putative OS=Ricinus communis OX=3988 GN=RCOM_0652430 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYK-EVMN 129
           L+F G+S+TN+T+ SD+FQA    E +K+LGVEKYNV+GISYGGYVAY MAE +  EV  
Sbjct: 112 LLFFGDSYTNRTDRSDIFQAKCASEGLKKLGVEKYNVVGISYGGYVAYYMAENFNDEVKK 171

Query: 130 VVIVSCEICSCDDQKVE 146
           VVIVSC IC  ++Q+ E
Sbjct: 172 VVIVSCGICYTEEQREE 188

BLAST of Carg06412 vs. ExPASy TrEMBL
Match: A0A6A6L1E0 (AB hydrolase-1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_015442 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYK-EVMN 129
           L+F G+SHT +T  SD+ QA  V E +K+LG+EKYN++G+SYGGYVAYRMAE Y+ EV  
Sbjct: 71  LLFFGDSHTKRTCQSDILQAKCVREGLKKLGIEKYNLVGLSYGGYVAYRMAENYREEVEK 130

Query: 130 VVIVSCEICSCDDQKVE 146
           VVI+SC IC  ++Q+ E
Sbjct: 131 VVILSCWICYTEEQRKE 147

BLAST of Carg06412 vs. ExPASy TrEMBL
Match: A0A200QIX1 (Alpha/beta hydrolase fold-1 OS=Macleaya cordata OX=56857 GN=BVC80_8419g4 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYK-EVMN 129
           LVF G S++  ++ +D+FQA  +GE MKRLGV +++V GISYGGYVAYRMA+IY+ EV  
Sbjct: 119 LVFFGGSYSKGSDRTDVFQARCIGEGMKRLGVNQFSVFGISYGGYVAYRMADIYREEVEK 178

Query: 130 VVIVSCEICSCDDQKVE 146
           +VI+SC IC  ++Q  E
Sbjct: 179 LVIMSCGICFTEEQMAE 195

BLAST of Carg06412 vs. ExPASy TrEMBL
Match: A0A6P3YUS7 (uncharacterized protein LOC107403324 OS=Ziziphus jujuba OX=326968 GN=LOC107403324 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIY-KEVMN 129
           L+F G+S+TN+ + +++FQA  V + +KRLGV+++ + GISYGG+VAYRMAEIY K+V  
Sbjct: 119 LLFFGKSYTNRPDRTEIFQAKCVFQGLKRLGVDRFAIYGISYGGFVAYRMAEIYPKDVDK 178

Query: 130 VVIVSCEICSCDDQKVE 146
           VVIVSC I S D+QK E
Sbjct: 179 VVIVSCGIGSTDEQKEE 195

BLAST of Carg06412 vs. TAIR 10
Match: AT4G33180.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11
Identity = 28/64 (43.75%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYKEVMNV 129
           LVF G+S ++ TN +++FQA  + ++M ++G+ KYNV G SYGG+VAY MA+++ E +  
Sbjct: 91  LVFFGDSTSSSTNRTEVFQAECMAKLMAKIGIGKYNVAGTSYGGFVAYHMAKMWPEKVEK 150

Query: 130 VIVS 134
           V+++
Sbjct: 151 VVIA 154

BLAST of Carg06412 vs. TAIR 10
Match: AT5G21950.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-11
Identity = 28/64 (43.75%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYKEVMNV 129
           LVF G S ++  N S++FQA+ +G++M++L VE+++V+G SYGG+VAY MA+++ E +  
Sbjct: 89  LVFFGGSSSSGENRSEMFQALCMGKLMEKLEVERFSVVGTSYGGFVAYNMAKMFPEKVEK 148

Query: 130 VIVS 134
           V+++
Sbjct: 149 VVLA 152

BLAST of Carg06412 vs. TAIR 10
Match: AT1G78210.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 26/76 (34.21%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYKEVMNV 129
           LVF G S T +   SD+FQA ++   ++   V+K++++G+SYGG+V YRMA +Y + +  
Sbjct: 86  LVFFGGSSTTRPERSDIFQAQTLMRALEAQSVKKFSLVGLSYGGFVGYRMASMYADAVEK 145

Query: 130 VIVSCEICSCDDQKVE 146
           V++ C     +++ ++
Sbjct: 146 VVICCAAVCVEEKDMK 161

BLAST of Carg06412 vs. TAIR 10
Match: AT2G18360.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 27/72 (37.50%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 70  LVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAYRMAEIYKEVMNV 129
           L+F G S+++  + S  FQA  + + ++ LG+EK+ ++G SYGG VA+++AE Y E++  
Sbjct: 97  LLFFGGSYSDNADRSPAFQAHCLVKSLRILGIEKFTLVGFSYGGMVAFKIAEEYPEMVQA 156

Query: 130 VIVSCEICSCDD 142
           ++VS  I +  D
Sbjct: 157 MVVSGSILAMTD 168

BLAST of Carg06412 vs. TAIR 10
Match: AT4G39955.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 58  RLVVKLQSVHTQLVFLGESHTNQTNTSDLFQAISVGEVMKRLGVEKYNVMGISYGGYVAY 117
           R + +       L+F G+S+T + + S+ FQA  V + M   GV    V G+SYGG+VAY
Sbjct: 72  RFIPRFNVYVPDLIFFGDSYTTRPDRSESFQATCVMKAMDAYGVRTMTVAGLSYGGFVAY 131

Query: 118 RMAEIYKEVMNVVIVSCEICSCDDQKVE 146
            +A  +KE ++ V++ C   + +++  E
Sbjct: 132 SLAAQFKERVDRVVLICAGVALEEKDSE 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018261.11.9e-74100.00hypothetical protein SDJN02_20129, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038889078.11.5e-1870.13LOW QUALITY PROTEIN: lipase 1-like [Benincasa hispida][more]
GAV82711.12.0e-1560.26Abhydrolase_6 domain-containing protein [Cephalotus follicularis][more]
EEF40992.14.4e-1561.04abhydrolase domain containing, putative [Ricinus communis][more]
XP_015576092.14.4e-1561.04uncharacterized protein LOC8284649 [Ricinus communis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1Q3CRG19.6e-1660.26Abhydrolase_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF... [more]
B9S5Q52.1e-1561.04Abhydrolase domain containing, putative OS=Ricinus communis OX=3988 GN=RCOM_0652... [more]
A0A6A6L1E01.1e-1458.44AB hydrolase-1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_... [more]
A0A200QIX12.0e-1355.84Alpha/beta hydrolase fold-1 OS=Macleaya cordata OX=56857 GN=BVC80_8419g4 PE=4 SV... [more]
A0A6P3YUS73.4e-1357.14uncharacterized protein LOC107403324 OS=Ziziphus jujuba OX=326968 GN=LOC10740332... [more]
Match NameE-valueIdentityDescription
AT4G33180.14.1e-1143.75alpha/beta-Hydrolases superfamily protein [more]
AT5G21950.19.2e-1143.75alpha/beta-Hydrolases superfamily protein [more]
AT1G78210.11.3e-0934.21alpha/beta-Hydrolases superfamily protein [more]
AT2G18360.11.9e-0837.50alpha/beta-Hydrolases superfamily protein [more]
AT4G39955.12.5e-0832.95alpha/beta-Hydrolases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820alpha/beta hydrolasecoord: 61..144
e-value: 3.0E-7
score: 32.3
IPR029058Alpha/Beta hydrolase foldSUPERFAMILY53474alpha/beta-Hydrolasescoord: 91..136
NoneNo IPR availablePANTHERPTHR43139SI:DKEY-122A22.2coord: 69..144
NoneNo IPR availablePANTHERPTHR43139:SF37ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEINcoord: 69..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06412-RACarg06412-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016787 hydrolase activity