Carg06410 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06410
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 9557790 .. 9558224 (+)
RNA-Seq ExpressionCarg06410
SyntenyCarg06410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGGACGCCAAGCAATATTGAGACGCACAGAGATTACTAGAAAATCACAGAACCAACGCTCGCTTCGTTCTGCTTCTCACTTTCTCCTCCAAGGTATGTGACCTTCTCCTCCAAGATTAGTGCGATGGCTTCCTAGTTTAGATTTCTTCGATTTTAGTTCTTGATTTGATTCATCTTTTCTTCTTTTCTTTTGCTTTCGATTTTGATGAATTTGTCGCTACTGGATTGCGTTTCATATTCTTCTGCAGTGCTTCTTGGTTGAAATTTGATTGAATCTTTGCTCTGTTTGGTTCTTTTCTGTAGTTTTTTTGCTGAATATTCGTGGAATTTGTACTCTCTGCTACATTCATTTGATTGCGTACAGAAAAAGCTTGGCGTGTGTCGAATCGTTTGAAAAGGGGAAGAAAATATTGGTTGCTGAAGAATTCGCTTGA

mRNA sequence

CGAGGACGCCAAGCAATATTGAGACGCACAGAGATTACTAGAAAATCACAGAACCAACGCTCGCTTCGTTCTGCTTCTCACTTTCTCCTCCAAGTTTTTTTGCTGAATATTCGTGGAATTTGTACTCTCTGCTACATTCATTTGATTGCGTACAGAAAAAGCTTGGCGTGTGTCGAATCGTTTGAAAAGGGGAAGAAAATATTGGTTGCTGAAGAATTCGCTTGA

Coding sequence (CDS)

CGAGGACGCCAAGCAATATTGAGACGCACAGAGATTACTAGAAAATCACAGAACCAACGCTCGCTTCGTTCTGCTTCTCACTTTCTCCTCCAAGTTTTTTTGCTGAATATTCGTGGAATTTGTACTCTCTGCTACATTCATTTGATTGCGTACAGAAAAAGCTTGGCGTGTGTCGAATCGTTTGAAAAGGGGAAGAAAATATTGGTTGCTGAAGAATTCGCTTGA

Protein sequence

RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVESFEKGKKILVAEEFA
Homology
[Close]
BLAST of Carg06410 vs. NCBI nr
Match: KAG6581810.1 (hypothetical protein SDJN03_21812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.4 bits (355), Expect = 3.2e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVES 60
          RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVES
Sbjct: 9  RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVES 68

Query: 61 FEKGKKILVAEEFA 75
          FEKGKKILVAEEFA
Sbjct: 69 FEKGKKILVAEEFA 82

[Close]
BLAST of Carg06410 vs. NCBI nr
Match: KAG7018259.1 (hypothetical protein SDJN02_20127, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.4 bits (355), Expect = 3.2e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVES 60
          RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVES
Sbjct: 1  RGRQAILRRTEITRKSQNQRSLRSASHFLLQVFLLNIRGICTLCYIHLIAYRKSLACVES 60

Query: 61 FEKGKKILVAEEFA 75
          FEKGKKILVAEEFA
Sbjct: 61 FEKGKKILVAEEFA 74

The following BLAST results are available for this feature:
BLAST of Carg06410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581810.13.2e-30100.00hypothetical protein SDJN03_21812, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018259.13.2e-30100.00hypothetical protein SDJN02_20127, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06410 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06410-RACarg06410-RAmRNA