Carg06390 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06390
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 9469893 .. 9470618 (-)
RNA-Seq ExpressionCarg06390
SyntenyCarg06390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGATAGGGAGAAAGGTAAGAATATTTCTTATTTCTATTTTCTTTCAGCGATTTTTTAATGATGTGAATTTTAAGGGGCCTAGGGTTCGCTTTTCGGCCTTCACTCTTCTATCATTCCCCAAATTTCTTCCCCTTTCCTATGAATTTTTCGTCGATTTTTCTTCATCTCATTGCGCTAGATGCTCAAATTCCCTTCATCCTTCCCATTCGCTTTCTGGGTTTTCCGGTTTCTGTCGTCTGAGGCGCTGAATTCCCTCTCGCTTCTTCTTCTGGTGGCTGGTTCGTTTAATTTTGAGGTTTTCTCTTATGGGTTTTGCTTTGGAGCTTCGGTTTTGATGTTTTTGTTTTTGTTTTTTTTTTTAATGAATCCTTGACAGCAGCTGGATATATGCTTTGTTCTTGCTGTTCATAAGTTTTGAGTTCTAGATAAGTCCTGCATTCAGTTTTGCTGAAATTATATGCTGAAGTGAGTGATTTCTTAGGGTTTAATTGTTGGTCCGGTGAGAATTAAACGTTCCAGACGGCTTTGATTTTGATCTTAAAGCCGTCCTTGAGAGGCTTTAGGATGATGGCATTGTTTCAACCTCAAAATGAAAATTCAGGTTCTGTAATTCTATGTCATGGCCTATTGGTATTGGTCTCTGAGATTGTTAGCTGATGACAGAGCGTTGGGGCTCTGTTTTGGCGAATGGTTGTGTTCTAACTGTTCCACAAGCAAGTTGA

mRNA sequence

ATGTGGATAGGGAGAAAGCGATTTTTTAATGATGTGAATTTTAAGGGGCCTAGGATGCTCAAATTCCCTTCATCCTTCCCATTCGCTTTCTGGGTTTTCCGGTTTCTGTCGTCTGAGGCGCTGAATTCCCTCTCGCTTCTTCTTCTGGTGGCTGGTTCGTTTAATTTTGAGCTGATGACAGAGCGTTGGGGCTCTGTTTTGGCGAATGGTTGTGTTCTAACTGTTCCACAAGCAAGTTGA

Coding sequence (CDS)

ATGTGGATAGGGAGAAAGCGATTTTTTAATGATGTGAATTTTAAGGGGCCTAGGATGCTCAAATTCCCTTCATCCTTCCCATTCGCTTTCTGGGTTTTCCGGTTTCTGTCGTCTGAGGCGCTGAATTCCCTCTCGCTTCTTCTTCTGGTGGCTGGTTCGTTTAATTTTGAGCTGATGACAGAGCGTTGGGGCTCTGTTTTGGCGAATGGTTGTGTTCTAACTGTTCCACAAGCAAGTTGA

Protein sequence

MWIGRKRFFNDVNFKGPRMLKFPSSFPFAFWVFRFLSSEALNSLSLLLLVAGSFNFELMTERWGSVLANGCVLTVPQAS
Homology
[Close]
BLAST of Carg06390 vs. NCBI nr
Match: KAG7018240.1 (hypothetical protein SDJN02_20108, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.7 bits (413), Expect = 6.5e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MWIGRKRFFNDVNFKGPRMLKFPSSFPFAFWVFRFLSSEALNSLSLLLLVAGSFNFELMT 60
          MWIGRKRFFNDVNFKGPRMLKFPSSFPFAFWVFRFLSSEALNSLSLLLLVAGSFNFELMT
Sbjct: 1  MWIGRKRFFNDVNFKGPRMLKFPSSFPFAFWVFRFLSSEALNSLSLLLLVAGSFNFELMT 60

Query: 61 ERWGSVLANGCVLTVPQAS 80
          ERWGSVLANGCVLTVPQAS
Sbjct: 61 ERWGSVLANGCVLTVPQAS 79

[Close]
BLAST of Carg06390 vs. NCBI nr
Match: KAG6581789.1 (AT-rich interactive domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 19 MLKFPSSFPFAFWVFRFLSSEALNSLSLLLLV-AGSFNFELMTERWGSVLANGC 72
          MLKFPSSFPFAFWVFRFLSSEALNSL+LLLLV A      L+    GSVL   C
Sbjct: 1  MLKFPSSFPFAFWVFRFLSSEALNSLALLLLVTAARQTCSLLAVTCGSVLKAKC 54

The following BLAST results are available for this feature:
BLAST of Carg06390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018240.16.5e-37100.00hypothetical protein SDJN02_20108, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581789.11.4e-0770.37AT-rich interactive domain-containing protein 4, partial [Cucurbita argyrosperma... [more]
BLAST of Carg06390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06390 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06390-RACarg06390-RAmRNA