Carg06388 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06388
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING/U-box protein with C6HC-type zinc finger
Location	Carg_Chr14: 9463109 .. 9464077 (-)
RNA-Seq Expression	Carg06388
Synteny	Carg06388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGGATGCATCATCAAGCCACGGCTCTTCCCTCTCCGTCGACGATATATACTTCTCTGTCCTTCACGAACACCAATCCGTCTTCCCAATCTCCGACGAAATCTTCGCCGAAGAGTTACAGCTCCAGGAATCAATCGCTTCCTCCTTATTCACTTCAACAATAATGTCCAATAAACCATCGCCCAACTCCGAATCTTCTGGTTCTACAACCCTATGCACAATCTGCACCGATACCAAATCCGCCTCCGAAATGTTCACATCCACCGGCTGTTCCCATACATTCTGCGCCGATTGCATCTCAAAACACATAGCCGCAAAGCTCGAGGATTCCATGGCGGTGAAATGCCCAGAGCCAAAATGCGCGGCGGTGCTGGAACCGGAAATGTGCGATTCGTTCGTTCCGAAAGAGGTGTTGGAGAGATGGGGAGATGCTCTGTTGAAGGCAATGCTTCTGAAGTGGAAGATGGTGTACTGTCCATTCAAAGACTGCTCGGCAGGGATGGTGGACGAGGAAGATATGGAGGCGGTTGAATGCCCTGAGTGTTGGAGAATGTTCTGCGCCAAGTGTGGAGTGGGATGGCATGGGGACATGAACTGCACGGAGTTTCAGAGATTGCTTAAGAACGGAGGAGTAGACAGAGAGGAGGAGATGACAATGAAACTGGCGGATGAACGGAAATGGAAGCGATGCCCTCATTGCAAGATATTAGTCGAGAAGATCGAAGGTTGCCTCCATATTACCTGCAGGTTACCATCCTCCGCCGCCTCCTCCTCCTCCTTGTTCTTCCTGTTCTTGCAAACAGATAAATTAATTTAGTAATTTGACATGAAATTTGTAGGTGCGGATCGGAATTTTGCTACAGCTGTGGAGCTAAGTGGAATGGCCACCATGCATGTCCGCCCTCAGCTTATGAACGTACAGTCTATCGACGTTGACTTGCACCCGCCGGTCGTCCTTAATTAA

mRNA sequence

ATGGCAGTGGATGCATCATCAAGCCACGGCTCTTCCCTCTCCGTCGACGATATATACTTCTCTGTCCTTCACGAACACCAATCCGTCTTCCCAATCTCCGACGAAATCTTCGCCGAAGAGTTACAGCTCCAGGAATCAATCGCTTCCTCCTTATTCACTTCAACAATAATGTCCAATAAACCATCGCCCAACTCCGAATCTTCTGGTTCTACAACCCTATGCACAATCTGCACCGATACCAAATCCGCCTCCGAAATGTTCACATCCACCGGCTGTTCCCATACATTCTGCGCCGATTGCATCTCAAAACACATAGCCGCAAAGCTCGAGGATTCCATGGCGGTGAAATGCCCAGAGCCAAAATGCGCGGCGGTGCTGGAACCGGAAATGTGCGATTCGTTCGTTCCGAAAGAGGTGTTGGAGAGATGGGGAGATGCTCTGTTGAAGGCAATGCTTCTGAAGTGGAAGATGGTGTACTGTCCATTCAAAGACTGCTCGGCAGGGATGGTGGACGAGGAAGATATGGAGGCGGTTGAATGCCCTGAGTGTTGGAGAATGTTCTGCGCCAAGTGTGGAGTGGGATGGCATGGGGACATGAACTGCACGGAGTTTCAGAGATTGCTTAAGAACGGAGGAGTAGACAGAGAGGAGGAGATGACAATGAAACTGGCGGATGAACGGAAATGGAAGCGATGCCCTCATTGCAAGATATTAGTCGAGAAGATCGAAGGTGCGGATCGGAATTTTGCTACAGCTGTGGAGCTAAGTGGAATGGCCACCATGCATGTCCGCCCTCAGCTTATGAACGTACAGTCTATCGACGTTGACTTGCACCCGCCGGTCGTCCTTAATTAA

Coding sequence (CDS)

ATGGCAGTGGATGCATCATCAAGCCACGGCTCTTCCCTCTCCGTCGACGATATATACTTCTCTGTCCTTCACGAACACCAATCCGTCTTCCCAATCTCCGACGAAATCTTCGCCGAAGAGTTACAGCTCCAGGAATCAATCGCTTCCTCCTTATTCACTTCAACAATAATGTCCAATAAACCATCGCCCAACTCCGAATCTTCTGGTTCTACAACCCTATGCACAATCTGCACCGATACCAAATCCGCCTCCGAAATGTTCACATCCACCGGCTGTTCCCATACATTCTGCGCCGATTGCATCTCAAAACACATAGCCGCAAAGCTCGAGGATTCCATGGCGGTGAAATGCCCAGAGCCAAAATGCGCGGCGGTGCTGGAACCGGAAATGTGCGATTCGTTCGTTCCGAAAGAGGTGTTGGAGAGATGGGGAGATGCTCTGTTGAAGGCAATGCTTCTGAAGTGGAAGATGGTGTACTGTCCATTCAAAGACTGCTCGGCAGGGATGGTGGACGAGGAAGATATGGAGGCGGTTGAATGCCCTGAGTGTTGGAGAATGTTCTGCGCCAAGTGTGGAGTGGGATGGCATGGGGACATGAACTGCACGGAGTTTCAGAGATTGCTTAAGAACGGAGGAGTAGACAGAGAGGAGGAGATGACAATGAAACTGGCGGATGAACGGAAATGGAAGCGATGCCCTCATTGCAAGATATTAGTCGAGAAGATCGAAGGTGCGGATCGGAATTTTGCTACAGCTGTGGAGCTAAGTGGAATGGCCACCATGCATGTCCGCCCTCAGCTTATGAACGTACAGTCTATCGACGTTGACTTGCACCCGCCGGTCGTCCTTAATTAA

Protein sequence

MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNKPSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVECPECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN

Homology

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BLAST of Carg06388 vs. NCBI nr
Match: KAG7018238.1 (putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 578.9 bits (1491), Expect = 2.3e-161
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60
           MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK
Sbjct: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60

Query: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120
           PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP
Sbjct: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120

Query: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180
           KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC
Sbjct: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180

Query: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240
           PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE
Sbjct: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240

Query: 241 KIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN 285
           KIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN
Sbjct: 241 KIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN 284

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BLAST of Carg06388 vs. NCBI nr
Match: KAG6581788.1 (putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 577.0 bits (1486), Expect = 8.8e-161
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60
           MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMS+K
Sbjct: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSSK 60

Query: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120
           PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP
Sbjct: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120

Query: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180
           KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC
Sbjct: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180

Query: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240
           PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE
Sbjct: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240

Query: 241 KIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN 285
           KIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN
Sbjct: 241 KIEGADRNFATAVELSGMATMHVRPQLMNVQSIDVDLHPPVVLN 284

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BLAST of Carg06388 vs. NCBI nr
Match: XP_022956145.1 (probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata])

HSP 1 Score: 497.7 bits (1280), Expect = 6.8e-137
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60
           MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK
Sbjct: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60

Query: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120
           PSPN ESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP
Sbjct: 61  PSPNPESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120

Query: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180
           KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC
Sbjct: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180

Query: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240
           P+CWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE
Sbjct: 181 PKCWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240

Query: 241 KIEG 245
           KIEG
Sbjct: 241 KIEG 244

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BLAST of Carg06388 vs. NCBI nr
Match: XP_022980686.1 (probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima])

HSP 1 Score: 468.0 bits (1203), Expect = 5.8e-128
Identity = 228/244 (93.44%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60
           MA ++SS+HGSSLSVDDIY+S LHEHQSVFPISDEIFAEELQLQESIASS FTSTIMSNK
Sbjct: 1   MAAESSSNHGSSLSVDDIYYSALHEHQSVFPISDEIFAEELQLQESIASS-FTSTIMSNK 60

Query: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120
           PSPN ESSGS TLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKL DS+AVKCPEP
Sbjct: 61  PSPNPESSGSKTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLVDSLAVKCPEP 120

Query: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180
           KCAAVL+PEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEED EAVEC
Sbjct: 121 KCAAVLKPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDREAVEC 180

Query: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240
           P+CWRMFCAKCGVGWH DMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE
Sbjct: 181 PKCWRMFCAKCGVGWHADMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240

Query: 241 KIEG 245
           KI G
Sbjct: 241 KILG 243

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BLAST of Carg06388 vs. NCBI nr
Match: XP_023527456.1 (probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_023527457.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 1.9e-102
Identity = 179/188 (95.21%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 57  MSNKPSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVK 116
           MSNKPSPN ESSGS TLCTICT TKSASEMFTSTGCSHTFCADCISKHIAA+LEDSMAVK
Sbjct: 1   MSNKPSPNPESSGSETLCTICTGTKSASEMFTSTGCSHTFCADCISKHIAARLEDSMAVK 60

Query: 117 CPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDME 176
           CPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDC AGMVD+ED E
Sbjct: 61  CPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCLAGMVDKEDRE 120

Query: 177 AVECPECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCK 236
           AVECP+CWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREE MTMKLADERKWKRCPHCK
Sbjct: 121 AVECPKCWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEVMTMKLADERKWKRCPHCK 180

Query: 237 ILVEKIEG 245
           ILVEKIEG
Sbjct: 181 ILVEKIEG 188

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BLAST of Carg06388 vs. ExPASy Swiss-Prot
Match: Q9UBS8 (E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens OX=9606 GN=RNF14 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-14
Identity = 55/205 (26.83%), Postives = 85/205 (41.46%), Query Frame = 0


Query: 73  LCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDS--MAVKCPEPKCAAVLEPEM 132
           LC+IC   K  SE      C H +C  C+  +   ++ D     + CPEPKC +V  P  
Sbjct: 219 LCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQ 278

Query: 133 CDSFVPKEVLERWGDALLKAML-LKWKMVYCPFKDCSAGMVDEEDMEAVECPECWRMFCA 192
               V  E+  R+   LL++ L L   +VYCP   C   ++ E       C  C   FC 
Sbjct: 279 VKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCNFAFCT 338

Query: 193 KCGVGWHGDMNC-----------TEF-------QRLLKNGGVDREEEMTMKLADERKW-- 252
            C + +HG   C            E+       +RLL      R  +  ++  + ++W  
Sbjct: 339 LCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESKEWLE 398

[Close]

BLAST of Carg06388 vs. ExPASy Swiss-Prot
Match: Q9SKC2 (Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana OX=3702 GN=ARI11 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.6e-14
Identity = 68/239 (28.45%), Postives = 108/239 (45.19%), Query Frame = 0


Query: 22  VLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNKPSPNSESSGSTTLCTICTDTK 81
           +LH H  V  + DE F +E ++++++         +  +P  +   +     C IC ++ 
Sbjct: 95  LLHYHWCVSKLEDEWFTDEERIRKTVG--------ILKEPVVDVNGTEVDIQCGICFESY 154

Query: 82  SASEMFTSTGCSHTFCADCISKHIAAKLEDS---MAVKCPEPKCAAVLEPEMCDSFVPKE 141
           +  E+     C H +C  C + +I  K+ED    + VKCPEP C AV+  +M D    K+
Sbjct: 155 TRKEI-ARVSCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEPSCYAVVGQDMIDEVTEKK 214

Query: 142 VLERWGDALLKAMLLKW-KMVYCPFKDCSAGM---VDEEDMEAVECPECWRMFCAKCGVG 201
             +++    L++ +    KM +CP   C   +   V+      V C  C   FC  C   
Sbjct: 215 DKDKYYRYFLRSYVEDGKKMKWCPSPGCEYAVEFGVNGSSSYDVSC-LCSYKFCWNCCED 274

Query: 202 WHGDMNC-TEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEGADRNFATA 253
            H  ++C T  + LLKN   D  E M   LA   K K CP CK  +EK  G +    +A
Sbjct: 275 AHSPVDCETVSKWLLKN--KDESENMNWILA---KTKPCPKCKRPIEKNTGCNHMSCSA 318

[Close]

BLAST of Carg06388 vs. ExPASy Swiss-Prot
Match: Q9SKC4 (Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana OX=3702 GN=ARI10 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-13
Identity = 63/236 (26.69%), Postives = 104/236 (44.07%), Query Frame = 0


Query: 22  VLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNKPSPNSESSGSTTLCTICTDTK 81
           +LH H  V  + DE F +E ++++++         +  +P  +   +     C IC ++ 
Sbjct: 77  LLHYHWCVSKLEDEWFTDEERIRKTVG--------ILKEPVVDVNGTEVDIQCGICFESY 136

Query: 82  SASEMFTSTGCSHTFCADCISKHIAAKLEDS---MAVKCPEPKCAAVLEPEMCDSFVPKE 141
           +  E+  S  C H +C  C + +I  K+ED    + VKCPEP C AV+  +M D    K+
Sbjct: 137 TRKEI-ASVSCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEPSCYAVVGQDMIDEVTEKK 196

Query: 142 VLERWGDALLKAMLLKW-KMVYCPFKDCSAGMVDEEDMEAVECPECWRMFCAKCGVGWHG 201
             +++    L++ +    KM +CP   C   +   E         C   FC  C    H 
Sbjct: 197 DKDKYYRYFLRSYVEDGKKMKWCPSPGCECAVEFGESSGYDVACLCSYRFCWNCSEDAHS 256

Query: 202 DMNC-TEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEGADRNFATA 253
            ++C T  + + KN   D  E     LA+    K CP CK  +EK  G +    +A
Sbjct: 257 PVDCETVSKWIFKN--QDESENKNWILANS---KPCPKCKRPIEKSHGCNHMTCSA 298

[Close]

BLAST of Carg06388 vs. ExPASy Swiss-Prot
Match: Q9JI90 (E3 ubiquitin-protein ligase RNF14 OS=Mus musculus OX=10090 GN=Rnf14 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 58/229 (25.33%), Postives = 90/229 (39.30%), Query Frame = 0


Query: 49  SSLFTSTIMSNKPSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAK 108
           SSL    +  N+       +    LC+IC   K  S+      C H +C  C+  +   +
Sbjct: 196 SSLIQEILDFNQARQTKCFNSKLFLCSICFCEKLGSDCMYFLECKHVYCKACLKDYFEIQ 255

Query: 109 LEDSM--AVKCPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAML-LKWKMVYCPFKDC 168
           ++D     + CPEP+C +V  P      V  ++  R+   LL++ L L   +VYCP   C
Sbjct: 256 IKDGQVKCLNCPEPQCPSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCC 315

Query: 169 SAGMVDEEDMEAVECPECWRMFCAKCGVGWHGDMNC-----------TEF---------- 228
              ++ E       C  C   FC  C + +HG   C            E+          
Sbjct: 316 QLPVMQEPGGTMAICSSCNFAFCTLCRLTYHGLSPCKVTAEKLIDLRNEYLQADEATKRF 375

Query: 229 --QRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEGADRNFAT 252
             QR  K       EEM  K   E+  K CP C   ++K++G ++   T
Sbjct: 376 LEQRYGKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCT 424

[Close]

BLAST of Carg06388 vs. ExPASy Swiss-Prot
Match: Q6DH94 (Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-11
Identity = 51/186 (27.42%), Postives = 88/186 (47.31%), Query Frame = 0


Query: 74  CTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSM--AVKCPE---PKCAAVLEP 133
           C +C       +M T + C   FC+ C+ +++   +++ +  A+ CP+   PK   +LE 
Sbjct: 20  CKLCLGEFPLEQMTTISQCQCIFCSLCLKQYVELLIKEGLETAISCPDSACPKQGHLLEN 79

Query: 134 EMCDSFVPKEVLERWGDALL-KAMLLKWKMVYCPFKDCSA-GMVDEEDM---EAVECPEC 193
           E+ +  V  EV++ +      + +LL     +CP   C A   ++E ++   + V+CPEC
Sbjct: 80  EI-ECMVAGEVMQHYKRLQFEREVLLDPCRTWCPSSSCQAVCQLNEAEVQLPQPVQCPEC 139

Query: 194 WRMFCAKCGVGWHGDMNCTEFQRLL-----KNGGVDREEEMTMKLADERKWKRCPHCKIL 245
              FC+ C    H    C E   +      +NG   + +E      DE   KRCP CK+ 
Sbjct: 140 SLRFCSACRADCHTGQACQEMLPITTFLPGENGSNLKSQE------DEAPIKRCPKCKVY 198

[Close]

BLAST of Carg06388 vs. ExPASy TrEMBL
Match: A0A6J1GX07 (probable E3 ubiquitin-protein ligase ARI10 OS=Cucurbita moschata OX=3662 GN=LOC111457924 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.3e-137
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60
           MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK
Sbjct: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60

Query: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120
           PSPN ESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP
Sbjct: 61  PSPNPESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120

Query: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180
           KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC
Sbjct: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180

Query: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240
           P+CWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE
Sbjct: 181 PKCWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240

Query: 241 KIEG 245
           KIEG
Sbjct: 241 KIEG 244

[Close]

BLAST of Carg06388 vs. ExPASy TrEMBL
Match: A0A6J1IU95 (probable E3 ubiquitin-protein ligase ARI5 OS=Cucurbita maxima OX=3661 GN=LOC111479983 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.8e-128
Identity = 228/244 (93.44%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNK 60
           MA ++SS+HGSSLSVDDIY+S LHEHQSVFPISDEIFAEELQLQESIASS FTSTIMSNK
Sbjct: 1   MAAESSSNHGSSLSVDDIYYSALHEHQSVFPISDEIFAEELQLQESIASS-FTSTIMSNK 60

Query: 61  PSPNSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEP 120
           PSPN ESSGS TLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKL DS+AVKCPEP
Sbjct: 61  PSPNPESSGSKTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLVDSLAVKCPEP 120

Query: 121 KCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVEC 180
           KCAAVL+PEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEED EAVEC
Sbjct: 121 KCAAVLKPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDREAVEC 180

Query: 181 PECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240
           P+CWRMFCAKCGVGWH DMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE
Sbjct: 181 PKCWRMFCAKCGVGWHADMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVE 240

Query: 241 KIEG 245
           KI G
Sbjct: 241 KILG 243

[Close]

BLAST of Carg06388 vs. ExPASy TrEMBL
Match: A0A6J1DGR7 (E3 ubiquitin-protein ligase RNF144A-like OS=Momordica charantia OX=3673 GN=LOC111020341 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.5e-84
Identity = 176/304 (57.89%), Postives = 214/304 (70.39%), Query Frame = 0


Query: 1   MAVDASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSL---FTSTIM 60
           MA +AS   G    VDDIYFS L + ++VFPISDE  AE LQLQE+IASS+    T+ I+
Sbjct: 1   MAAEASFGLG---LVDDIYFSALLDEETVFPISDEKLAESLQLQEAIASSVSASITTPIV 60

Query: 61  SN------------KPSPNSESSGS-TTLCTICTDTKSASEMFTSTGCSHTFCADCISKH 120
            +            K   +S SSGS T+LC ICTDTKSA+EMFTS+ CSH+FCADCISKH
Sbjct: 61  KSENVSSSSRRVILKGESSSSSSGSETSLCIICTDTKSAAEMFTSSACSHSFCADCISKH 120

Query: 121 IAAKLEDSMAVKCPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKD 180
           IAAKLED++AVKCPEPKC + LEP MCDSFVP+EVLERWGDAL +A++L    +YCPF D
Sbjct: 121 IAAKLEDNIAVKCPEPKCESTLEPWMCDSFVPREVLERWGDALCEAIILGIPRMYCPFVD 180

Query: 181 CSAGMVDE----EDMEAVECPECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMT 240
           CSA M+D+      + A ECP C RMFCA+C VGWHG+M C EFQ+L K GG  RE+ M 
Sbjct: 181 CSAAMIDDGGEAATVTAAECPSCRRMFCAQCKVGWHGEMECDEFQKLRKEGGELREDLMA 240

Query: 241 MKLADERKWKRCPHCKILVEKIE-----------GADRNFATAVELSGMATMHVRPQLMN 274
           ++LA+ +KWKRCPHCKI VEK+            GA+ +FA AVE SG+  MHV  QLMN
Sbjct: 241 LQLANRQKWKRCPHCKIYVEKVAGCLHITCSFCIGAEISFAIAVEPSGVVAMHVHLQLMN 300

[Close]

BLAST of Carg06388 vs. ExPASy TrEMBL
Match: A0A0A0L952 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 140/218 (64.22%), Postives = 164/218 (75.23%), Query Frame = 0


Query: 32  ISDEIFAEELQLQESIASSLFTSTIMSNKPSPNSESSGSTTLCTICTDTKSASEMFTSTG 91
           +SDE +AEELQLQE I SSL +S I    PSP   SS S  LC+ICTD KS S+MFT+  
Sbjct: 17  LSDENYAEELQLQEVITSSLLSSPI---NPSPTPHSSTSQLLCSICTDAKSHSQMFTNRV 76

Query: 92  CSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAM 151
           C+HTFC  CIS HIAAKLE +MAVKCPEP C  VLEPEMC SFVPK VLERW DAL +AM
Sbjct: 77  CTHTFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEAM 136

Query: 152 LLKWKMVYCPFKDCSAGMVD---EEDMEAVECPECWRMFCAKCGVGWHGDMNCTEFQRLL 211
           +LKWK + CPFKDC A ++D   EE + AVEC  CWR+FCA+C VGWHG+M C EFQRL 
Sbjct: 137 ILKWKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGEMECGEFQRLR 196

Query: 212 KNGGV--DREEEMTMKLADERKWKRCPHCKILVEKIEG 245
           K  GV  D+++ MT+KLA+ +KW+RCPHCKI VEK  G
Sbjct: 197 KEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVG 231

[Close]

BLAST of Carg06388 vs. ExPASy TrEMBL
Match: A0A5A7UED3 (E3 ubiquitin-protein ligase RNF144B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00700 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.6e-73
Identity = 142/219 (64.84%), Postives = 165/219 (75.34%), Query Frame = 0


Query: 32  ISDEIFAEELQLQESIASSLFTSTI-MSNKPSPNSESSGSTTLCTICTDTKSASEMFTST 91
           +SDE +AEELQLQE I SSL +  I +   PSP   SS S  LC+ICTD KS S+MFT+ 
Sbjct: 13  LSDENYAEELQLQEVITSSLLSPPIKIPIHPSPTPHSSTSQVLCSICTDAKSHSQMFTNR 72

Query: 92  GCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKA 151
            C+HTFC DCISKHIAAKLE +MAVKCPEP C  VLEPEMC SFVPK VLERW DAL +A
Sbjct: 73  VCTHTFCTDCISKHIAAKLEVTMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEA 132

Query: 152 MLLKWKMVYCPFKDCSAGMVDEEDME---AVECPECWRMFCAKCGVGWHGDMNCTEFQRL 211
           M+LK K + CPFKDC A M+DE D E   AVEC  CWR+FCA+C VGWHG+M C EFQRL
Sbjct: 133 MILKSKRLNCPFKDCGAAMIDEGDEEGVTAVECGSCWRLFCAECRVGWHGEMKCGEFQRL 192

Query: 212 LKNGGV--DREEEMTMKLADERKWKRCPHCKILVEKIEG 245
            K  GV  D+++ MT+KLA+ +KW+RCPHCKI VEK  G
Sbjct: 193 RKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVG 231

[Close]

BLAST of Carg06388 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-48
Identity = 97/266 (36.47%), Postives = 152/266 (57.14%), Query Frame = 0


Query: 5   ASSSHGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSN----- 64
           +S+   + + VD+ Y S L ++  +FPI+DE +A E+ LQE++ SS   ST+  N     
Sbjct: 8   SSTKVDTDMLVDETYLSALFDYDEIFPIADESYATEIHLQEAMFSSFGASTVGVNHHPQV 67

Query: 65  --------KPSP-----NSESSGSTTLCTICTDTKSASEMFT-STGCSHTFCADCISKHI 124
                   K  P     N     S  LC IC D K +S++F  +T C+H +C DC  +++
Sbjct: 68  HRNLVTLVKQEPEIKAENEPMEPSRRLCMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYV 127

Query: 125 AAKL-EDSMAVKCPEPKCAAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKD 184
           A K+ E++  +KCP+ +C  ++EP  C   +PK+V +RW   L ++++  W   YCPFKD
Sbjct: 128 ATKIKENASRIKCPDVECTRLIEPYTCRDLIPKDVFDRWEKILCESLISSWDKFYCPFKD 187

Query: 185 CSAGMVDEEDMEA----VECPECWRMFCAKCGVGWHGDMNCTEFQRL--LKNGGVDREEE 244
           CSA MV+ E+ +A     EC  C R+FC +C V WH  + C EFQR    K    D ++ 
Sbjct: 188 CSAMMVNNENGDANVTQTECRSCHRLFCVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDA 247

[Close]

BLAST of Carg06388 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein )

HSP 1 Score: 183.7 bits (465), Expect = 2.0e-46
Identity = 87/185 (47.03%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 64  NSESSGSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDS-MAVKCPEPKC 123
           +S S  +T  C IC D+KS  E F   GCSH +C DC+SK+IAAKL+D+ ++++CP   C
Sbjct: 105 SSSSKTATFDCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGC 164

Query: 124 AAVLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEED---MEAVE 183
           +  LEP+ C   +PKEV +RWGDAL +A++++ K  YCP+KDCSA +  EE    M+  E
Sbjct: 165 SGRLEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALVFLEESEVKMKDSE 224

Query: 184 CPECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILV 243
           CP C RM C +CG  WH +M C EFQ+L  N    R++ +   +A ++KWKRCP CK  +
Sbjct: 225 CPHCHRMVCVECGTQWHPEMTCEEFQKLAANER-GRDDILLATMAKQKKWKRCPSCKFYI 284

Query: 244 EKIEG 245
           EK +G
Sbjct: 285 EKSQG 288

[Close]

BLAST of Carg06388 vs. TAIR 10
Match: AT3G45540.1 (RING/U-box protein with C6HC-type zinc finger )

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22
Identity = 60/226 (26.55%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 27  QSVFPISDEIFAEELQLQESIASSLFTSTIMSNKPSPNSESSGSTTLCTICTDTK-SASE 86
           +S FPI  E   + +     +A     S I  +   P    +   T C IC D   + ++
Sbjct: 55  KSSFPIFVE--GKRISYAYKLARETIVSEISISVNPPRQPKATRKTTCKICLDDDINENQ 114

Query: 87  MFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEPEMCDSFVPKEVLERWGD 146
           MF    C H FC+DC+ +HI  +L +   ++CP  +C   L+   C + +  ++ E W  
Sbjct: 115 MFCVGKCRHRFCSDCMRRHIEVRLLEGSVMRCPHYRCKTTLKFGGCINLLTPKIREMWQQ 174

Query: 147 ALLKAMLLKWKMVYCPFKDCSAGMVD-------EEDMEAVECPECWRMFCAKCGVGWHGD 206
            + + ++     +YCP   CSA M +       +ED     C +C ++FC KC V WH +
Sbjct: 175 RIKEDLIPVTGRIYCPNSRCSALMSETELSISTKEDEVRRCCFKCGQIFCIKCKVSWHSN 234

Query: 207 MNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEG 245
           ++C ++++L  N      +     LA++++W++C  C+ ++E  +G
Sbjct: 235 LSCNDYKKL--NPYPTENDGKIKALANQKRWRQCGKCQHMIELSKG 276

[Close]

BLAST of Carg06388 vs. TAIR 10
Match: AT5G60250.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22
Identity = 70/251 (27.89%), Postives = 118/251 (47.01%), Query Frame = 0


Query: 12  SLSVDDIYFSVLH--EHQSVFPISDEI-FAEELQLQESIASSLFTSTIMSNKPSPNSESS 71
           SL +DD+   + H   +Q V    +++ FA +L  +ESI S      +++    P    +
Sbjct: 243 SLLLDDLQSIMQHFSSYQHVLVARNDVKFAYKL-ARESILS------MVTPHEDPRQAKA 302

Query: 72  GSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEP 131
                C IC +   A  MF+   C H FC  C+ +H+  KL   MA KCP   C + L  
Sbjct: 303 VLKEECAICFNDIVAEGMFSVDKCRHRFCFQCVKQHVEVKLLHGMAPKCPHDGCKSELVI 362

Query: 132 EMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVDEEDMEAVE--------- 191
           + C   +  ++ + W   L +  +   + VYCP+  CSA M   +  E+ +         
Sbjct: 363 DACGKLLTPKLSKLWQQRLQENAIPVTERVYCPYPRCSALMSKTKISESAKSLLSLYPKS 422

Query: 192 ----CPECWRMFCAKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHC 247
               C EC  +FC  C V WHG+++CTE+++L      D  +     LA+ + W++C  C
Sbjct: 423 GVRRCVECRGLFCVDCKVPWHGNLSCTEYKKLHPEPPAD--DVKLKSLANNKMWRQCGKC 482

[Close]

BLAST of Carg06388 vs. TAIR 10
Match: AT2G26135.1 (RING/U-box protein with C6HC-type zinc finger )

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-22
Identity = 54/179 (30.17%), Postives = 88/179 (49.16%), Query Frame = 0


Query: 74  CTICTDTK-SASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEPEMCD 133
           CTIC D   +A  MF    C H FC++C+ +HI   L     + CP  +C + L    C 
Sbjct: 153 CTICFDDDINADMMFYIDQCGHMFCSECVKRHIEVSLLQGSLITCPSYRCKSKLTYGSCV 212

Query: 134 SFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGM----VDEEDMEAVECPECWRMFC 193
           + +  +V E W   + +  +     VYCP   CSA M    +D+       C +C   FC
Sbjct: 213 NILTPKVKEMWIQRMGEDSIPVTDRVYCPNPTCSALMSVTELDQLTGSKRCCVKCGESFC 272

Query: 194 AKCGVGWHGDMNCTEFQRLLKNGGVDREEEMTMKLADERKWKRCPHCKILVEKIEGADR 248
            KC V WH +++C  +++L  N   +  ++   +LA++  W++C  CK ++E  +G  R
Sbjct: 273 IKCKVPWHDNLSCKRYKKLHSNRTTN--DKQLNELANQESWRQCSKCKHMIELTQGCVR 329

The following BLAST results are available for this feature:

BLAST of Carg06388 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018238.1	2.3e-161	100.00	putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp...	[more]
KAG6581788.1	8.8e-161	99.65	putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp...	[more]
XP_022956145.1	6.8e-137	99.18	probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]	[more]
XP_022980686.1	5.8e-128	93.44	probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima]	[more]
XP_023527456.1	1.9e-102	95.21	probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_02352...	[more]

BLAST of Carg06388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UBS8	3.4e-14	26.83	E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens OX=9606 GN=RNF14 PE=1 SV=1	[more]
Q9SKC2	7.6e-14	28.45	Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana OX=3702 GN=AR...	[more]
Q9SKC4	1.3e-13	26.69	Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana OX=3702 GN=AR...	[more]
Q9JI90	1.2e-11	25.33	E3 ubiquitin-protein ligase RNF14 OS=Mus musculus OX=10090 GN=Rnf14 PE=1 SV=2	[more]
Q6DH94	2.7e-11	27.42	Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144a...	[more]

BLAST of Carg06388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GX07	3.3e-137	99.18	probable E3 ubiquitin-protein ligase ARI10 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IU95	2.8e-128	93.44	probable E3 ubiquitin-protein ligase ARI5 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1DGR7	2.5e-84	57.89	E3 ubiquitin-protein ligase RNF144A-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0L952	2.0e-73	64.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=3 SV=1	[more]
A0A5A7UED3	2.6e-73	64.84	E3 ubiquitin-protein ligase RNF144B-like protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Carg06388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14250.1	1.7e-48	36.47	RING/U-box superfamily protein	[more]
AT3G53690.1	2.0e-46	47.03	RING/U-box superfamily protein	[more]
AT3G45540.1	2.0e-22	26.55	RING/U-box protein with C6HC-type zinc finger	[more]
AT5G60250.1	2.0e-22	27.89	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G26135.1	7.8e-22	30.17	RING/U-box protein with C6HC-type zinc finger	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 141..201 e-value: 1.3E-14 score: 64.5
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 145..201 e-value: 8.4E-12 score: 45.1
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 74..118 e-value: 5.6E-6 score: 26.3
None	No IPR available	GENE3D	2.20.25.20		coord: 158..202 e-value: 4.6E-7 score: 31.8
None	No IPR available	GENE3D	1.20.120.1750		coord: 203..248 e-value: 2.5E-5 score: 26.3
None	No IPR available	PANTHER	PTHR11685:SF327	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 25..245
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 69..150
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 144..206
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 67..152 e-value: 1.4E-21 score: 78.2
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 25..245
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 92..101
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 70..284 score: 19.471682
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 74..121 score: 10.674659

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06388-RA	Carg06388-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity