Carg06371 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06371
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMethionine aminopeptidase
LocationCarg_Chr06: 7548706 .. 7551192 (-)
RNA-Seq ExpressionCarg06371
SyntenyCarg06371
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGTATTAGTTAAAGTTAGCAATTCATATTTTGTAGCCGGCGGCGGAAGAGGAGGTAAGAGGATTCGTTTCTGTTAGTGGTTCGATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCACGATGCGGCAAACCTTCCCATCTTCAGTATGTGTTTTCAACTTTCTTTTCAAGTTTTCAGTAGCCGTGCTAGTTCGCATGTTATCTTTGGTTCTTGAATGTCGATGGAATTTGAGTTGTTTTGCGTTTCTTTGAAATTGGATGGATTTTTAGTCGCTTAGTTTGGGCGTGCGAGTTGTGAATTGAGAATCAGTCAATGGAACTTGGAAGATAGTTAGTGCCTTTGGAAGTTTATTGTTGTTTTTCTTTTTGTGGCTTCTTGGGCGAAATCTGAATCTAAGAATGATATGAAAGAAGCTGAAAGTAATGGTTTAGTGGTTTTTTTTCCTAGTGATTTTGGTGGAATTTGATTGCCGATATGCTGAATCGGTAGGGGCTTCCGGCCATGATATTCCGAACTTGAATCTTTTTGTTGGCTTGGTACTTGCTTTGCAAGTTTAGAACCAATGGGTGGTTGGAGCGCTTTTGTGTCGGTTCTCTTTGTGACTTTTTTCTTTCTGGAGGGCAATGATTCATTAGTTTAAAACTAATGAGCAGTGTTTTTAAAGCCTTATATCAAGAACTTTACTTGGGAAGTTATAGGATTGTTTTCCAAGAAATTTTGGTGGATTATGATAATCATTGGCAATTGGTGATTTTGATGGTGTTCTCTTATATCTTTTTCTGTAATTGTACTCTATTCAATGTTTGTGCCAATCAATGGTTTGAAAGGCTAAAAGCGGTTTTCTGGTTGTTCCTTTGAAGAAGCAGGGCACAAGCTTCAATTTAAAATACAGAGAACTTTGATAAAAATCATAGAAATGTATATTAAGTAGTATTGATTAGGGTAGATTTATTTTCTTAATATTTGTCATCAATATTTCTTTAGGCCTTGTGGGTAAAGTAAAATATTGGGCTAAAATTTCAATTTGTGGTGTGTTGTTGTTAAATACGTAAGCAAGCTTTTATATTTCTGAAGAATATGACTAATTGATATTGTTCTTCCTGAGACTTTATGACGTAATGTGTCTTGGGGAGGCAAGGCATAACCGCTTTTGATCCAAAAAAGGCATCAGACTCATGATTAAAAATTAGATTATGGTTAATGCACTTTTTCATGTAAGCTCCTGGGTTATTTTGAGGATCTCCTGGTTTTCCTTTATTATTATTATTCTTACTTTTATTATTATTTTTTTAATAAAAATTGTTTCTTAAAAAAATGAAAACTAATGAATGCTTGATTTTGACTCTGTTTTGGATCAAGTGAAGTATAAATGGATGATGAGAAATCAATTTAAAGCCAAGGGGATTTTTACTAATTCTCTACTTGGCTTAAATAAAAAAGAATTATGGTTAAAATAATGCGAATGGCTTTATAAGGAAGCTGTAAGAACTTTATATCCAAGACATCCTCACACTTCTGAATTTGAAAATTTTATTGGTTTCTTTCTCATTAAACTCACCTGAAAAGGCATTTAACTGCATTGTTTCATAGCACCTTTCTCTTTGGCTTGAAGGGATTTCCAACCAAAGATTGCTTCGAACCATGTTGAACTTGGATATGGGCTGATCAGTAGACAGCAAAAGTGTCAAGTGAAAGCCACCACAGCTTTTGGGTCTTAATAGTACTTCAAAAGCAAATGGCATTTCATTAATGGGTTCTATCATCTGGTGATTGATAATTAGTCCGACTAAACAGTGTGTATCCTAGAAGTGTGATAGTAGCAATAATGACAGTGTAGGGTTTGTGTTTCAGAGTGTAATTCAATGATAAATTTGTTGTTTGGAATTATTTGAGACCCGTTCTTTAGGGATACTCTGTTTGATTTGTTTGTTTTTAAGGTTGTAGTTCACATATTATTATTATTATTATGTTTTTTATTTTTTATTTTTTAGTTCTGCAGTCAACATATTCCTTGAGAACCATTTGTACTTTTTATTAATTCCTTTTTTTTTTCCCTAATCAACTTATCTTATTTTTAGGTGTCCAAAGTGTATGGAACTGAAGCTTCCTCGGGAGGGTGCTGCTTTTTGGTCTGTAATCATTTCCAATTACTTCTAGATGTTTATTGGATATTAGTTAAATCAATCGTATAAGTTAACCTTTTATTCCATTTTTTTCTTAAAAACATTGTTTGTGAACATGTAATATGATGTGAGTCGAGGAAACCATTACTGGAAGTTTTTACATTCACGTTCTGTCAGGTTGAGAACTTGTGAATTCGAAGTTTGACACGTATTTGGGCATATATAAGAACCTCCACATGTAATTGTATAACATTCAGAACTTAAACATTACAGTTTCTTATGCATCAAGACTTTTTGTGTTTATTTAGTGTACTGCAGGGTATTGATTCATCTATATTGGAAAACTAA

mRNA sequence

TTCGTATTAGTTAAAGTTAGCAATTCATATTTTGTAGCCGGCGGCGGAAGAGGAGGTAAGAGGATTCGTTTCTGTTAGTGGTTCGATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCACGATGCGGCAAACCTTCCCATCTTCAGGATTTCCAACCAAAGATTGCTTCGAACCATGTTGAACTTGGATATGGGCTGATCAGTAGACAGCAAAAGTGTCAAGTGAAAGCCACCACAGCTTTTGGTTCTGCAGTCAACATATTCCTTGAGAACCATTTGTGTCCAAAGTGTATGGAACTGAAGCTTCCTCGGGAGGGTGCTGCTTTTTGGTCTGGTATTGATTCATCTATATTGGAAAACTAA

Coding sequence (CDS)

ATGGCCGGCGGTTCAGATGCGGCCGAAGCTGTTACGTTAACTTGCGCACGATGCGGCAAACCTTCCCATCTTCAGGATTTCCAACCAAAGATTGCTTCGAACCATGTTGAACTTGGATATGGGCTGATCAGTAGACAGCAAAAGTGTCAAGTGAAAGCCACCACAGCTTTTGGTTCTGCAGTCAACATATTCCTTGAGAACCATTTGTGTCCAAAGTGTATGGAACTGAAGCTTCCTCGGGAGGGTGCTGCTTTTTGGTCTGGTATTGATTCATCTATATTGGAAAACTAA

Protein sequence

MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSAVNIFLENHLCPKCMELKLPREGAAFWSGIDSSILEN
Homology
[Close]
BLAST of Carg06371 vs. NCBI nr
Match: KAG7028679.1 (hypothetical protein SDJN02_09860 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 6.9e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWSGIDSSILEN 97
          VNIFLENHLCPKCMELKLPREGAAFWSGIDSSILEN
Sbjct: 61 VNIFLENHLCPKCMELKLPREGAAFWSGIDSSILEN 96

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_022974140.1 (methionine aminopeptidase 1A [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_022946479.1 (methionine aminopeptidase 1A [Cucurbita moschata] >XP_023540382.1 methionine aminopeptidase 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: KAG6597209.1 (Methionine aminopeptidase 1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1   MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
           MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 486 MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 528

Query: 61  VNIFLENHLCPKCMELKLPREGAAFWS 88
                    CPKCMELKLPREGAAF S
Sbjct: 546 ---------CPKCMELKLPREGAAFCS 528

[Close]
BLAST of Carg06371 vs. NCBI nr
Match: XP_038877769.1 (methionine aminopeptidase 1A [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 7.7e-08
Identity = 40/87 (45.98%), Postives = 40/87 (45.98%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSD AE VTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDTAETVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. ExPASy Swiss-Prot
Match: Q9SLN5 (Methionine aminopeptidase 1A OS=Arabidopsis thaliana OX=3702 GN=MAP1A PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.0e-04
Identity = 28/85 (32.94%), Postives = 34/85 (40.00%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MA  SDA+   TL+CARC KP+HLQ                                   
Sbjct: 1  MASESDASSIATLSCARCEKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKC++LKLPRE A+F
Sbjct: 61 ---------CPKCIDLKLPREQASF 41

[Close]
BLAST of Carg06371 vs. ExPASy TrEMBL
Match: A0A6J1ID71 (Methionine aminopeptidase OS=Cucurbita maxima OX=3661 GN=LOC111472733 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. ExPASy TrEMBL
Match: A0A6J1G3X8 (Methionine aminopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111450523 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 42/87 (48.28%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAEAVTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAEAVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCMELKLPREGAAF S
Sbjct: 61 ---------CPKCMELKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. ExPASy TrEMBL
Match: A0A1S3AWF4 (Methionine aminopeptidase OS=Cucumis melo OX=3656 GN=LOC103483368 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.3e-08
Identity = 39/87 (44.83%), Postives = 40/87 (45.98%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSD AE VTLTCARCGKPSHLQ                                   
Sbjct: 1  MAGGSDTAETVTLTCARCGKPSHLQ----------------------------------- 43

Query: 61 VNIFLENHLCPKCMELKLPREGAAFWS 88
                   CPKCM+LKLPREGAAF S
Sbjct: 61 ---------CPKCMDLKLPREGAAFCS 43

[Close]
BLAST of Carg06371 vs. ExPASy TrEMBL
Match: A0A540L5P1 (Methionine aminopeptidase OS=Malus baccata OX=106549 GN=C1H46_032641 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGS  AE  +L+CA CGKP+HLQ          + LG  ++ R++  Q ++       
Sbjct: 1  MAGGSGVAEPASLSCASCGKPAHLQ--------RAIALGGKIVVREKGNQWESNPHQVHR 60

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
           N FL    CPKC +LKLPRE AAF
Sbjct: 61 HNCFLPLQ-CPKCAQLKLPREAAAF 76

[Close]
BLAST of Carg06371 vs. ExPASy TrEMBL
Match: A0A6J1D0A3 (Methionine aminopeptidase OS=Momordica charantia OX=3673 GN=LOC111016103 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 38/85 (44.71%), Postives = 39/85 (45.88%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MAGGSDAAE VTL+C RCGKPSHLQ                                   
Sbjct: 1  MAGGSDAAETVTLSCVRCGKPSHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKCMELKLPREGAAF
Sbjct: 61 ---------CPKCMELKLPREGAAF 41

[Close]
BLAST of Carg06371 vs. TAIR 10
Match: AT2G45240.1 (methionine aminopeptidase 1A )

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-05
Identity = 28/85 (32.94%), Postives = 34/85 (40.00%), Query Frame = 0 

Query: 1  MAGGSDAAEAVTLTCARCGKPSHLQDFQPKIASNHVELGYGLISRQQKCQVKATTAFGSA 60
          MA  SDA+   TL+CARC KP+HLQ                                   
Sbjct: 1  MASESDASSIATLSCARCEKPAHLQ----------------------------------- 41

Query: 61 VNIFLENHLCPKCMELKLPREGAAF 86
                   CPKC++LKLPRE A+F
Sbjct: 61 ---------CPKCIDLKLPREQASF 41

The following BLAST results are available for this feature:
BLAST of Carg06371 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028679.16.9e-49100.00hypothetical protein SDJN02_09860 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022974140.19.1e-0948.28methionine aminopeptidase 1A [Cucurbita maxima][more]
XP_022946479.19.1e-0948.28methionine aminopeptidase 1A [Cucurbita moschata] >XP_023540382.1 methionine ami... [more]
KAG6597209.19.1e-0948.28Methionine aminopeptidase 1A, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038877769.17.7e-0845.98methionine aminopeptidase 1A [Benincasa hispida][more]
BLAST of Carg06371 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SLN57.0e-0432.94Methionine aminopeptidase 1A OS=Arabidopsis thaliana OX=3702 GN=MAP1A PE=1 SV=1[more]
BLAST of Carg06371 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ID714.4e-0948.28Methionine aminopeptidase OS=Cucurbita maxima OX=3661 GN=LOC111472733 PE=3 SV=1[more]
A0A6J1G3X84.4e-0948.28Methionine aminopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111450523 PE=3 SV=... [more]
A0A1S3AWF48.3e-0844.83Methionine aminopeptidase OS=Cucumis melo OX=3656 GN=LOC103483368 PE=3 SV=1[more]
A0A540L5P11.4e-0743.53Methionine aminopeptidase OS=Malus baccata OX=106549 GN=C1H46_032641 PE=3 SV=1[more]
A0A6J1D0A32.4e-0744.71Methionine aminopeptidase OS=Momordica charantia OX=3673 GN=LOC111016103 PE=3 SV... [more]
BLAST of Carg06371 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G45240.15.0e-0532.94methionine aminopeptidase 1A [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06371-RACarg06371-RAmRNA