Carg06368 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06368
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chromo domain-containing protein LHP1-like
Location	Carg_Chr06: 7568404 .. 7570743 (-)
RNA-Seq Expression	Carg06368
Synteny	Carg06368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAAGAGAGGGAAAGGATCGATTAGACGAAAATGGGGCGAGGGAAGAAGAAGGCGGTGGGAAGCTCTGAGACTGAAGCAATGGCGCTTCCAGTCCCTGGTTTCACAGATTCAACTCTTGTTAATGGAGATTCAGCTCCTTCCAACTCTAACAACAATGGAAATGAACTTATAATTCCATCTCGATTTCCAGCTTCTTCGATTCAGAACAGTTCTGTCCAAACTCCACTACTCGCCGGGGAAGGCGGAGAAGTCCACGGAGAAGAGAATGCTGTCGCTGATGTTACTGCTTCTGAGCTAACAAAGCTTGACGATGGCTTCTTCGTAGTTGAAGCTATTCGAAGGAAACGAGTTCGTAAGGTATCTCAGAACTTGCAAAATTTAGCTCGTTCTCTCGACTAGAATGTGGATTTCCTTTTGCAGGTTACGGCCTGTACTTTAGAAATTATAGATTTTCTGAGAATGAGTTTATTTTCACAAAATTCTCTTCTATTTCTATGTACTGTGCGAATAGCTTTTTCGGTGTTTTGTTTTCGAATTAGTTTGGTATTGTACCCTTGGATTTTTTGTTCAGGCGATTGTGTTTATGTCATTTATTAGTCTGATGTTAGATTTTCTTTTCTGTTTTCGAATCCATAGGGACAGCTTCAGTATCTTGTCAAATGGTATGTACGATCTTGCTGTTTTCCTTTTGGTTTATTGTTCAGATCTTATCCCTGTGATTTGTTCTTGATATTCGTGAAAGTAGCTTCGGCAAAAAAATTTTGTTGATAGGCATGGCTGGCCAGAAACTGCCAACACATGGGAACCCTGGGACAATCTCCAATCATGCGCTGAATTTATTGAGGAATTTGAGAAAAGGATGGAAATGTATGACAAATGTAGATGTAGTTCGAACATTTCCTCACAACTCGCAACGTCACATCCTAATCTGGGTTCATTTTTTGTAGCTCACGATCAGGAAAGCAGCGGAAGCGCAAGCGCAAGGATGGAGACGGCAATAATCAACTTCAGGAGGAAAAACAGTACCGCGTCATAGCTACTGATAATGTCACAAATGTTTACATGAGTACTGTGGACGATTGTCTATCGGCCACTCCTTTAAACAGCATAATTCATTATGATCTTCCTACTCCTCAAGTACTTATAGACTCTACTGGAACATTCAATGTTGAAAATGGAGATATGGGTGAGAAATTTGATGGAAGTAGAAGGAGAGACGAATATGATTTGAAACTTATCGAGCTCAAGGCAGCAATCTCTGCCAATATGGTTGATTCTGATAATAAAGCAGAGTCTTCTAAAGATCTTGGCCTTGTTTATGATGATTCCAAGGCTGATTGCGGGGTGGGTTCCACTCAGGGAAGTCACTCCATTGGCGCCAAGAGAAGGAAATCTAGTAGGGTGAAAAGGTTCACTAAGGAAGCAGTCTCGTCTGAAAACTCTGAACAAAGATTAAAACACAATGGAATTGCTGTAAACATGGAGCCAACTGATCAAAATGAACAATTGGGGCCCGAGAATCCTAGTTTGTCAGGCCACTCCAGAAATGTAGCTACTATAAGAAGGATTATCAAGCCTGTTGGTTATTCAGTTTCAGTATCAAATAACATCCCGGATGTAGTCGTGACCTTCTTGGCTGTGAGGTTTGTTATACAACACTGACTATTCCTTTGTGCTGTTGAGTATTACTGTACGTTTTCTCTATTGAATAGTCATTAGCTAAACTCTACTTGATTTCAATTATTGTTTTCAAATTTCTTACCAATCACACAAAAATCTAGCTTCATCATCTGTTAGAGCTTGGTTATCTATACAATTCTTCAATTCTCTCCCATTGGCATGCATTTTACTGACAAGACAGCCAAAGGAACAAGCGCTGGCCATTTCCTATTCGTTTTGGTTCGTTCTAAGCAGTGATTGTGGATCTTTTTCTTTTTGCATGTAGGTCTGATGGAAAAGAAGTAACGGTGAATAACAAATTTCTAAAGGCTAACAATCCACTTCTGGTAATTGATCAATTTTTCGTACTCTAGCTTACATATTTAACTTAGTTTCTGACCTCTTAGTATTTACTACTCTCTCACTGCAGTTGATTAACTTCTATGAGCAACATCTCCGATATAATCCAACATTATGAAAGAGCTACAAGTGTATCTGGCCACCATCATGTTTATGGTTTACAAGCTGTAATTTTGTAGCTTTAGGAGATTTGGTGGAGTATAATATGAATTCTTGGTAAAATTCTCAAGAACTGTGTTAAGAGGAGATCAAACATTTTCTTGCTCTGTTTTATTTCTACATGAGGATAAATGGAAAGTTATATTCTTTTTGGATA

mRNA sequence

GAAAAAAAGAGAGGGAAAGGATCGATTAGACGAAAATGGGGCGAGGGAAGAAGAAGGCGGTGGGAAGCTCTGAGACTGAAGCAATGGCGCTTCCAGTCCCTGGTTTCACAGATTCAACTCTTGTTAATGGAGATTCAGCTCCTTCCAACTCTAACAACAATGGAAATGAACTTATAATTCCATCTCGATTTCCAGCTTCTTCGATTCAGAACAGTTCTGTCCAAACTCCACTACTCGCCGGGGAAGGCGGAGAAGTCCACGGAGAAGAGAATGCTGTCGCTGATGTTACTGCTTCTGAGCTAACAAAGCTTGACGATGGCTTCTTCGTAGTTGAAGCTATTCGAAGGAAACGAGTTCGTAAGGGACAGCTTCAGTATCTTGTCAAATGGTATCTTCGGCAAAAAAATTTTGTTGATAGGCATGGCTGGCCAGAAACTGCCAACACATGGGAACCCTGGGACAATCTCCAATCATGCGCTGAATTTATTGAGGAATTTGAGAAAAGGATGGAAATCTCACGATCAGGAAAGCAGCGGAAGCGCAAGCGCAAGGATGGAGACGGCAATAATCAACTTCAGGAGGAAAAACAGTACCGCGTCATAGCTACTGATAATGTCACAAATGTTTACATGAGTACTGTGGACGATTGTCTATCGGCCACTCCTTTAAACAGCATAATTCATTATGATCTTCCTACTCCTCAAGTACTTATAGACTCTACTGGAACATTCAATGTTGAAAATGGAGATATGGGTGAGAAATTTGATGGAAGTAGAAGGAGAGACGAATATGATTTGAAACTTATCGAGCTCAAGGCAGCAATCTCTGCCAATATGGTTGATTCTGATAATAAAGCAGAGTCTTCTAAAGATCTTGGCCTTGTTTATGATGATTCCAAGGCTGATTGCGGGGTGGGTTCCACTCAGGGAAGTCACTCCATTGGCGCCAAGAGAAGGAAATCTAGTAGGGTGAAAAGGTTCACTAAGGAAGCAGTCTCGTCTGAAAACTCTGAACAAAGATTAAAACACAATGGAATTGCTGTAAACATGGAGCCAACTGATCAAAATGAACAATTGGGGCCCGAGAATCCTAGTTTGTCAGGCCACTCCAGAAATGTAGCTACTATAAGAAGGATTATCAAGCCTGTTGGTTATTCAGTTTCAGTATCAAATAACATCCCGGATGTAGTCGTGACCTTCTTGGCTGTGAGGTCTGATGGAAAAGAAGTAACGGTGAATAACAAATTTCTAAAGGCTAACAATCCACTTCTGTTGATTAACTTCTATGAGCAACATCTCCGATATAATCCAACATTATGAAAGAGCTACAAGTGTATCTGGCCACCATCATGTTTATGGTTTACAAGCTGTAATTTTGTAGCTTTAGGAGATTTGGTGGAGTATAATATGAATTCTTGGTAAAATTCTCAAGAACTGTGTTAAGAGGAGATCAAACATTTTCTTGCTCTGTTTTATTTCTACATGAGGATAAATGGAAAGTTATATTCTTTTTGGATA

Coding sequence (CDS)

ATGGGGCGAGGGAAGAAGAAGGCGGTGGGAAGCTCTGAGACTGAAGCAATGGCGCTTCCAGTCCCTGGTTTCACAGATTCAACTCTTGTTAATGGAGATTCAGCTCCTTCCAACTCTAACAACAATGGAAATGAACTTATAATTCCATCTCGATTTCCAGCTTCTTCGATTCAGAACAGTTCTGTCCAAACTCCACTACTCGCCGGGGAAGGCGGAGAAGTCCACGGAGAAGAGAATGCTGTCGCTGATGTTACTGCTTCTGAGCTAACAAAGCTTGACGATGGCTTCTTCGTAGTTGAAGCTATTCGAAGGAAACGAGTTCGTAAGGGACAGCTTCAGTATCTTGTCAAATGGTATCTTCGGCAAAAAAATTTTGTTGATAGGCATGGCTGGCCAGAAACTGCCAACACATGGGAACCCTGGGACAATCTCCAATCATGCGCTGAATTTATTGAGGAATTTGAGAAAAGGATGGAAATCTCACGATCAGGAAAGCAGCGGAAGCGCAAGCGCAAGGATGGAGACGGCAATAATCAACTTCAGGAGGAAAAACAGTACCGCGTCATAGCTACTGATAATGTCACAAATGTTTACATGAGTACTGTGGACGATTGTCTATCGGCCACTCCTTTAAACAGCATAATTCATTATGATCTTCCTACTCCTCAAGTACTTATAGACTCTACTGGAACATTCAATGTTGAAAATGGAGATATGGGTGAGAAATTTGATGGAAGTAGAAGGAGAGACGAATATGATTTGAAACTTATCGAGCTCAAGGCAGCAATCTCTGCCAATATGGTTGATTCTGATAATAAAGCAGAGTCTTCTAAAGATCTTGGCCTTGTTTATGATGATTCCAAGGCTGATTGCGGGGTGGGTTCCACTCAGGGAAGTCACTCCATTGGCGCCAAGAGAAGGAAATCTAGTAGGGTGAAAAGGTTCACTAAGGAAGCAGTCTCGTCTGAAAACTCTGAACAAAGATTAAAACACAATGGAATTGCTGTAAACATGGAGCCAACTGATCAAAATGAACAATTGGGGCCCGAGAATCCTAGTTTGTCAGGCCACTCCAGAAATGTAGCTACTATAAGAAGGATTATCAAGCCTGTTGGTTATTCAGTTTCAGTATCAAATAACATCCCGGATGTAGTCGTGACCTTCTTGGCTGTGAGGTCTGATGGAAAAGAAGTAACGGTGAATAACAAATTTCTAAAGGCTAACAATCCACTTCTGTTGATTAACTTCTATGAGCAACATCTCCGATATAATCCAACATTATGA

Protein sequence

MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNSSVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQLQEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMGEKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSHSIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRNVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQHLRYNPTL

Homology

[Close]

BLAST of Carg06368 vs. NCBI nr
Match: KAG7028682.1 (Chromo domain protein LHP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 830.5 bits (2144), Expect = 6.7e-237
Identity = 427/427 (100.00%), Postives = 427/427 (100.00%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL
Sbjct: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
           RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH
Sbjct: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 427

[Close]

BLAST of Carg06368 vs. NCBI nr
Match: KAG6597211.1 (Chromo domain protein LHP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 793.5 bits (2048), Expect = 9.0e-226
Identity = 414/427 (96.96%), Postives = 414/427 (96.96%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELII SRFPASSIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIISSRFPASSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW  
Sbjct: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW-- 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                   HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 --------HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADC VGSTQGSH
Sbjct: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCAVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEAVSSENSEQRLK NGIAVNMEPTDQNEQLGPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKQNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 417

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 417

[Close]

BLAST of Carg06368 vs. NCBI nr
Match: XP_022950639.1 (chromo domain-containing protein LHP1-like [Cucurbita moschata])

HSP 1 Score: 785.4 bits (2027), Expect = 2.5e-223
Identity = 410/427 (96.02%), Postives = 411/427 (96.25%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNEL I SRFPASSIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELKISSRFPASSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW  
Sbjct: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW-- 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                   HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 --------HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSRRRDEYDLKLIELKAAISANMVDSD KAESSKDLGLVYDDSKADC VGSTQGSH
Sbjct: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDKKAESSKDLGLVYDDSKADCAVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEAVSSENS+ RLK NGIAVNMEPTDQNEQLGPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAVSSENSDHRLKQNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 417

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 417

[Close]

BLAST of Carg06368 vs. NCBI nr
Match: XP_023540194.1 (chromo domain-containing protein LHP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 783.9 bits (2023), Expect = 7.2e-223
Identity = 410/427 (96.02%), Postives = 411/427 (96.25%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELII SRFPA SIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIISSRFPAFSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEV+GEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW  
Sbjct: 61  SVQTPLLAGEGGEVNGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW-- 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                   HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 --------HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDST TFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTATFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSR RDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADC VGSTQGSH
Sbjct: 241 EKFDGSRTRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCAVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEAVSSENSEQRLK NGIAVNMEPTDQNEQLGPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKQNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 417

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 417

[Close]

BLAST of Carg06368 vs. NCBI nr
Match: XP_022974186.1 (chromo domain-containing protein LHP1-like [Cucurbita maxima] >XP_022975510.1 chromo domain-containing protein LHP1-like [Cucurbita maxima])

HSP 1 Score: 773.1 bits (1995), Expect = 1.3e-219
Identity = 401/427 (93.91%), Postives = 408/427 (95.55%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNEL+I SRFPASSIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELLISSRFPASSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEV+GEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW  
Sbjct: 61  SVQTPLLAGEGGEVNGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW-- 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                   HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 --------HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSR+RDEYDLKL+EL AAISANMVDSDNKAESSKDLGLVYDDSKADC VGSTQGSH
Sbjct: 241 EKFDGSRKRDEYDLKLVELNAAISANMVDSDNKAESSKDLGLVYDDSKADCAVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEA S+ENSEQRLK NG+ VNM   DQNEQ+GPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAASAENSEQRLKQNGVTVNMGAIDQNEQMGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 417

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 417

[Close]

BLAST of Carg06368 vs. ExPASy Swiss-Prot
Match: Q946J8 (Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana OX=3702 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-43
Identity = 139/382 (36.39%), Postives = 210/382 (54.97%), Query Frame = 0


Query: 70  EGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDRH 129
           +GG+   EE    +    E  KLD+GF+ +EAIRRKRVRKG++QYL+KW           
Sbjct: 82  DGGDEEDEEGE-GEGGQEERPKLDEGFYEIEAIRRKRVRKGKVQYLIKW----------R 141

Query: 130 GWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQLQEEKQYRVI 189
           GWPETANTWEP +NLQS A+ I+ FE  ++  + G  RKRKRK    ++Q++++++    
Sbjct: 142 GWPETANTWEPLENLQSIADVIDAFEGSLKPGKPG--RKRKRKYAGPHSQMKKKQRLTST 201

Query: 190 A------TDNVTNVYMSTVDDCLSATPL--NSIIHYDLPTPQVLIDSTGTFNVENGDMGE 249
           +      +D+ T++  S++ D      L  +S+++ D+      + +    N  +  M  
Sbjct: 202 SHDATEKSDSSTSLNNSSLPDIPDPLDLSGSSLLNRDVEAKNAYVSNQVEANSGSVGMAR 261

Query: 250 KFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYD-DSKADCGVGST---- 309
           +        EYD  L EL+       V++ N A  S+  G+  + D+    G+       
Sbjct: 262 QVRLIDNEKEYDPTLNELRGP-----VNNSNGAGCSQGGGIGSEGDNVRPNGLLKVYPKE 321

Query: 310 --QGSHSIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQ--------NEQ 369
             + S  IGAKRRKS  VKRF ++  +S N       N +  ++   D         NE 
Sbjct: 322 LDKNSRFIGAKRRKSGSVKRFKQDGSTSNNHTAPTDQN-LTPDLTTLDSFGRIARMGNEY 381

Query: 370 LG-PENPSLSGHSR-NVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKF 427
            G  EN +LS  ++     I +I+KP+ ++ SVS+N+ +V+VTFLA+RSDGKE  V+N+F
Sbjct: 382 PGVMENCNLSQKTKIEELDITKILKPMSFTASVSDNVQEVLVTFLALRSDGKEALVDNRF 441

[Close]

BLAST of Carg06368 vs. ExPASy Swiss-Prot
Match: Q944N1 (Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-42
Identity = 135/367 (36.78%), Postives = 200/367 (54.50%), Query Frame = 0


Query: 70  EGGEVHGEENAVADVTASEL-TKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDR 129
           E  EV   E    D  A ++  KL +GF+ +E +RR+R  KG++ YL+KW          
Sbjct: 65  EAPEVVRVEKGDGDGVAKKVKPKLAEGFYEIETVRRRRTVKGKVYYLIKW---------- 124

Query: 130 HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQLQEEKQYRV 189
            GWPE+ANTWEP  NL SC + I+ +E+ +   +SGK R+RKRK G        ++Q R 
Sbjct: 125 RGWPESANTWEPETNLSSCTDIIDAYEESL---KSGKLRRRKRKFGATQTHPMIKQQRRF 184

Query: 190 ---IATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMGEKFDG 249
              +AT N   V +  +++   + PLN +   D      L+DS G  +  N  + E  +G
Sbjct: 185 SAPVATYNGPAVKVRIIEEPTPSPPLNVLKATD------LVDSNG--SELNSKVDEVVNG 244

Query: 250 S----RRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSHS 309
           +    R ++E +LKL ELK A S N     N  + S + GL     K + G    Q    
Sbjct: 245 NGLRLREQNELNLKLSELKGATSTN----GNPVDISGN-GLTNGFPKVN-GAEFYQSDRC 304

Query: 310 IGAKRRKSSRVKRFTKEAVSS--ENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSR 369
            GAK+RKS  V+RF +E  S+  ++++  L    +A  M+    N  +      ++  S+
Sbjct: 305 TGAKKRKSGCVRRFKRETTSAVKDDTQDALAGGPLATFMQDGSHNHVM------VADDSK 364

Query: 370 NVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQ 427
           +  TI +++ PV Y  S SN++ DV VTF+A R+DG  V V+NKFLK NNPLLLINFYE+
Sbjct: 365 DGYTITQLVNPVSYKASFSNDMLDVSVTFVAKRADGNLVLVDNKFLKMNNPLLLINFYEE 398

[Close]

BLAST of Carg06368 vs. ExPASy Swiss-Prot
Match: Q339W7 (Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica OX=39947 GN=LHP1 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.0e-35
Identity = 123/368 (33.42%), Postives = 172/368 (46.74%), Query Frame = 0


Query: 77  EENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDRHGWPETAN 136
           E  A A V      KL +G++ +E IRR+R+RKG+LQYLVKW           GWPE+AN
Sbjct: 87  EAEAAAPVVDGSPPKLAEGYYEIEDIRRRRLRKGKLQYLVKW----------RGWPESAN 146

Query: 137 TWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQLQEEKQYRVIATDNVTN 196
           TWEP +NL +C++ I+ FE R++  R G++RKRK                  I T  V  
Sbjct: 147 TWEPLENLSACSDIIDAFEMRLQSPRPGRKRKRK------------------ITTTPVAG 206

Query: 197 VYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGD----MGEKFDGSRRRDEY 256
              S            S      P P+ L   T      N       G    GS  R++ 
Sbjct: 207 SNPSHGKRGRPRLDAKSHTRAPAPEPKQLPCRTSCRRATNCSSKTVAGLDASGSVVRNQL 266

Query: 257 DLKLIE------------LKAAISANMVDSDNKAESSKDLGLVYDDSKAD--CGVGSTQG 316
              +++             +  +S  + D  N+        LV   S ++    V  +QG
Sbjct: 267 AQNIVQEGSSSVISRTPCQELPLSIRLTDQQNEHH------LVNGSSNSENLVKVPPSQG 326

Query: 317 SHSIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHS 376
               GAK+RKS  V+RF +   +    E      G  V  E     E    +     G  
Sbjct: 327 GQVTGAKKRKSGNVRRFEQNKPTQGQGE-----CGALVVAEDVGSTEGETGDKKKTEG-C 386

Query: 377 RNVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYE 427
            N   I +IIKPV ++ +V+N++  V +TF A+RSDG+EV V++K LKANNPLLLI++YE
Sbjct: 387 PNRVHITKIIKPVRFAAAVNNDVQQVSITFKALRSDGQEVMVDDKELKANNPLLLISYYE 414

[Close]

BLAST of Carg06368 vs. ExPASy Swiss-Prot
Match: O95931 (Chromobox protein homolog 7 OS=Homo sapiens OX=9606 GN=CBX7 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 88  ELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDRHGWPETANTWEPWDNLQSC 147
           EL+ + +  F VE+IR+KRVRKG+++YLVKW           GWP   +TWEP +++   
Sbjct: 2   ELSAIGEQVFAVESIRKKRVRKGKVEYLVKW----------KGWPPKYSTWEPEEHILD- 61

Query: 148 AEFIEEFEKRMEISRSGKQRKRKRK 173
              +  +E++ E  R+   RKR  K
Sbjct: 62  PRLVMAYEEKEERDRASGYRKRGPK 75

[Close]

BLAST of Carg06368 vs. ExPASy Swiss-Prot
Match: Q8VDS3 (Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 88  ELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDRHGWPETANTWEPWDNLQSC 147
           EL+ + +  F VE+IR+KRVRKG+++YLVKW           GWP   +TWEP +++   
Sbjct: 2   ELSAIGEQVFAVESIRKKRVRKGKVEYLVKW----------KGWPPKYSTWEPEEHILD- 61

Query: 148 AEFIEEFEKRMEISRSGKQRKRKRK 173
              +  +E++ E  R+   RKR  K
Sbjct: 62  PRLVMAYEEKEERDRASGYRKRGPK 75

[Close]

BLAST of Carg06368 vs. ExPASy TrEMBL
Match: A0A6J1GGE8 (chromo domain-containing protein LHP1-like OS=Cucurbita moschata OX=3662 GN=LOC111453676 PE=4 SV=1)

HSP 1 Score: 785.4 bits (2027), Expect = 1.2e-223
Identity = 410/427 (96.02%), Postives = 411/427 (96.25%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNEL I SRFPASSIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELKISSRFPASSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW  
Sbjct: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW-- 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                   HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 --------HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSRRRDEYDLKLIELKAAISANMVDSD KAESSKDLGLVYDDSKADC VGSTQGSH
Sbjct: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDKKAESSKDLGLVYDDSKADCAVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEAVSSENS+ RLK NGIAVNMEPTDQNEQLGPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAVSSENSDHRLKQNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 417

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 417

[Close]

BLAST of Carg06368 vs. ExPASy TrEMBL
Match: A0A6J1IGX1 (chromo domain-containing protein LHP1-like OS=Cucurbita maxima OX=3661 GN=LOC111474921 PE=4 SV=1)

HSP 1 Score: 773.1 bits (1995), Expect = 6.1e-220
Identity = 401/427 (93.91%), Postives = 408/427 (95.55%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNEL+I SRFPASSIQNS
Sbjct: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELLISSRFPASSIQNS 60

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQTPLLAGEGGEV+GEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW  
Sbjct: 61  SVQTPLLAGEGGEVNGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKW-- 120

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                   HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL
Sbjct: 121 --------HGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG
Sbjct: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSR+RDEYDLKL+EL AAISANMVDSDNKAESSKDLGLVYDDSKADC VGSTQGSH
Sbjct: 241 EKFDGSRKRDEYDLKLVELNAAISANMVDSDNKAESSKDLGLVYDDSKADCAVGSTQGSH 300

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           SIGAKRRKSSRVKRFTKEA S+ENSEQRLK NG+ VNM   DQNEQ+GPENPSLSGHSRN
Sbjct: 301 SIGAKRRKSSRVKRFTKEAASAENSEQRLKQNGVTVNMGAIDQNEQMGPENPSLSGHSRN 360

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH
Sbjct: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 417

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 421 LRYNPTL 417

[Close]

BLAST of Carg06368 vs. ExPASy TrEMBL
Match: A0A1S3AVS6 (chromo domain protein LHP1-like OS=Cucumis melo OX=3656 GN=LOC103483372 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 5.1e-150
Identity = 294/427 (68.85%), Postives = 334/427 (78.22%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGRGKKKA GSSE E +ALP P FT ST +NGDSAPS SNNNG+EL IP   P SS+ N+
Sbjct: 16  MGRGKKKAAGSSEPETVALPSPDFTQSTHLNGDSAPSISNNNGSELKIPFPHPPSSLHNA 75

Query: 61  SVQTPLLAGEGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYL 120
           SVQ PL   + G V+GE+NAV DV+ASE T LD+GFF VEAIRRKRVRKGQLQYLVKW  
Sbjct: 76  SVQIPLPTDDAGVVNGEDNAVPDVSASERTNLDEGFFEVEAIRRKRVRKGQLQYLVKW-- 135

Query: 121 RQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQL 180
                    GWPET NTWEP DNLQSC EFIEE+E+R   SRSGKQRKRKRKDGD  ++ 
Sbjct: 136 --------RGWPETENTWEPLDNLQSCFEFIEEYEERFCHSRSGKQRKRKRKDGDIESES 195

Query: 181 QEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFNVENGDMG 240
           QEEK  ++IA DNVT+V ++T+DD LSA PLN  +H DLP PQ  +DS     +  G++ 
Sbjct: 196 QEEKDLQIIAIDNVTDVVINTLDDRLSAAPLNKKLHRDLPIPQEPLDS-----IHEGELD 255

Query: 241 EKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGVGSTQGSH 300
           EKFDGSR+RDEYD+KLI+  A++S NMVDSD K  +S D+ LVYD SKADC VGS QGSH
Sbjct: 256 EKFDGSRKRDEYDVKLIDFNASMSGNMVDSDKKTVASNDVSLVYDVSKADCVVGSAQGSH 315

Query: 301 SIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPSLSGHSRN 360
           S GAKRRKSSRVKRFTK+   S  SEQ LK N   V +EPTD +EQLGP+NPS SGHSRN
Sbjct: 316 STGAKRRKSSRVKRFTKD---SALSEQGLKQNAATVGIEPTDPSEQLGPQNPSSSGHSRN 375

Query: 361 VATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLLINFYEQH 420
           V+TI RII+PVGYSVSV NNIPDV+VTFL VRSDGKEVTVNNKFLKANNP LLIN+YEQH
Sbjct: 376 VSTITRIIRPVGYSVSVLNNIPDVIVTFLVVRSDGKEVTVNNKFLKANNPHLLINYYEQH 424

Query: 421 LRYNPTL 428
           LRYNPTL
Sbjct: 436 LRYNPTL 424

[Close]

BLAST of Carg06368 vs. ExPASy TrEMBL
Match: A0A6J1EA84 (chromo domain-containing protein LHP1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432131 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 1.1e-144
Identity = 292/433 (67.44%), Postives = 333/433 (76.91%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGR KKKA GSSE E + LP+ G TDST VNGDS  S  N+NGNE +I S +PASS+QNS
Sbjct: 6   MGRRKKKAAGSSEPETVTLPISGITDSTHVNGDSGFSIFNDNGNEPLIASPYPASSVQNS 65

Query: 61  SVQTPLLAGEGGEVH-------GEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQ 120
           SVQTPL+  E GEV+       GE NA  DV+A E TK D+GFF VE+I RKRVRKGQLQ
Sbjct: 66  SVQTPLVTDEAGEVNGGDDGDRGEVNAAGDVSAYEQTKFDEGFFEVESILRKRVRKGQLQ 125

Query: 121 YLVKWYLRQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKD 180
           YLVKW          HGWP+TANTWEP DNLQSC+E I+EFE   E SRSGKQRKRKRK 
Sbjct: 126 YLVKW----------HGWPKTANTWEPSDNLQSCSELIDEFE---ESSRSGKQRKRKRKV 185

Query: 181 GDGNNQLQEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFN 240
           G   NQ +E+K++  +AT+NVT++ +STVDDC+SATPLN  IH DLPTPQ  +D      
Sbjct: 186 GGVENQSREKKRHHNLATNNVTDIVISTVDDCISATPLNIKIHCDLPTPQAPVD------ 245

Query: 241 VENGDMGEKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGV 300
           VENG M   F GSR+RD++DLKL ELKAA+SANMVDSD KA +S DL LVYD SK DC V
Sbjct: 246 VENGHMEGTFYGSRKRDDHDLKLSELKAAMSANMVDSDKKAVASNDLVLVYDVSKVDCVV 305

Query: 301 GSTQGSHSIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPS 360
           GS Q SHSIG+KRRKSSRVKRFTK+A  SE+SEQ LK N   +++EPTD+NE+L  ENPS
Sbjct: 306 GSNQESHSIGSKRRKSSRVKRFTKDAALSEDSEQGLKRNASTLSIEPTDRNEELELENPS 365

Query: 361 LSGHSRNVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLL 420
           LSGHSR V+ I RIIKPVGYSVSVSN IPDV VTFL +RSDGKEVTV+NKFLK NNP LL
Sbjct: 366 LSGHSRKVSDITRIIKPVGYSVSVSNGIPDVTVTFLVLRSDGKEVTVSNKFLKTNNPHLL 419

Query: 421 INFYEQHLRYNPT 427
           INFYEQHLRYNPT
Sbjct: 426 INFYEQHLRYNPT 419

[Close]

BLAST of Carg06368 vs. ExPASy TrEMBL
Match: A0A6J1EFU6 (chromo domain-containing protein LHP1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432131 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 1.1e-144
Identity = 292/433 (67.44%), Postives = 333/433 (76.91%), Query Frame = 0


Query: 1   MGRGKKKAVGSSETEAMALPVPGFTDSTLVNGDSAPSNSNNNGNELIIPSRFPASSIQNS 60
           MGR KKKA GSSE E + LP+ G TDST VNGDS  S  N+NGNE +I S +PASS+QNS
Sbjct: 1   MGRRKKKAAGSSEPETVTLPISGITDSTHVNGDSGFSIFNDNGNEPLIASPYPASSVQNS 60

Query: 61  SVQTPLLAGEGGEVH-------GEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQ 120
           SVQTPL+  E GEV+       GE NA  DV+A E TK D+GFF VE+I RKRVRKGQLQ
Sbjct: 61  SVQTPLVTDEAGEVNGGDDGDRGEVNAAGDVSAYEQTKFDEGFFEVESILRKRVRKGQLQ 120

Query: 121 YLVKWYLRQKNFVDRHGWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKD 180
           YLVKW          HGWP+TANTWEP DNLQSC+E I+EFE   E SRSGKQRKRKRK 
Sbjct: 121 YLVKW----------HGWPKTANTWEPSDNLQSCSELIDEFE---ESSRSGKQRKRKRKV 180

Query: 181 GDGNNQLQEEKQYRVIATDNVTNVYMSTVDDCLSATPLNSIIHYDLPTPQVLIDSTGTFN 240
           G   NQ +E+K++  +AT+NVT++ +STVDDC+SATPLN  IH DLPTPQ  +D      
Sbjct: 181 GGVENQSREKKRHHNLATNNVTDIVISTVDDCISATPLNIKIHCDLPTPQAPVD------ 240

Query: 241 VENGDMGEKFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYDDSKADCGV 300
           VENG M   F GSR+RD++DLKL ELKAA+SANMVDSD KA +S DL LVYD SK DC V
Sbjct: 241 VENGHMEGTFYGSRKRDDHDLKLSELKAAMSANMVDSDKKAVASNDLVLVYDVSKVDCVV 300

Query: 301 GSTQGSHSIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQNEQLGPENPS 360
           GS Q SHSIG+KRRKSSRVKRFTK+A  SE+SEQ LK N   +++EPTD+NE+L  ENPS
Sbjct: 301 GSNQESHSIGSKRRKSSRVKRFTKDAALSEDSEQGLKRNASTLSIEPTDRNEELELENPS 360

Query: 361 LSGHSRNVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKFLKANNPLLL 420
           LSGHSR V+ I RIIKPVGYSVSVSN IPDV VTFL +RSDGKEVTV+NKFLK NNP LL
Sbjct: 361 LSGHSRKVSDITRIIKPVGYSVSVSNGIPDVTVTFLVLRSDGKEVTVSNKFLKTNNPHLL 414

Query: 421 INFYEQHLRYNPT 427
           INFYEQHLRYNPT
Sbjct: 421 INFYEQHLRYNPT 414

[Close]

BLAST of Carg06368 vs. TAIR 10
Match: AT5G17690.1 (like heterochromatin protein (LHP1) )

HSP 1 Score: 178.7 bits (452), Expect = 9.8e-45
Identity = 139/382 (36.39%), Postives = 210/382 (54.97%), Query Frame = 0


Query: 70  EGGEVHGEENAVADVTASELTKLDDGFFVVEAIRRKRVRKGQLQYLVKWYLRQKNFVDRH 129
           +GG+   EE    +    E  KLD+GF+ +EAIRRKRVRKG++QYL+KW           
Sbjct: 82  DGGDEEDEEGE-GEGGQEERPKLDEGFYEIEAIRRKRVRKGKVQYLIKW----------R 141

Query: 130 GWPETANTWEPWDNLQSCAEFIEEFEKRMEISRSGKQRKRKRKDGDGNNQLQEEKQYRVI 189
           GWPETANTWEP +NLQS A+ I+ FE  ++  + G  RKRKRK    ++Q++++++    
Sbjct: 142 GWPETANTWEPLENLQSIADVIDAFEGSLKPGKPG--RKRKRKYAGPHSQMKKKQRLTST 201

Query: 190 A------TDNVTNVYMSTVDDCLSATPL--NSIIHYDLPTPQVLIDSTGTFNVENGDMGE 249
           +      +D+ T++  S++ D      L  +S+++ D+      + +    N  +  M  
Sbjct: 202 SHDATEKSDSSTSLNNSSLPDIPDPLDLSGSSLLNRDVEAKNAYVSNQVEANSGSVGMAR 261

Query: 250 KFDGSRRRDEYDLKLIELKAAISANMVDSDNKAESSKDLGLVYD-DSKADCGVGST---- 309
           +        EYD  L EL+       V++ N A  S+  G+  + D+    G+       
Sbjct: 262 QVRLIDNEKEYDPTLNELRGP-----VNNSNGAGCSQGGGIGSEGDNVRPNGLLKVYPKE 321

Query: 310 --QGSHSIGAKRRKSSRVKRFTKEAVSSENSEQRLKHNGIAVNMEPTDQ--------NEQ 369
             + S  IGAKRRKS  VKRF ++  +S N       N +  ++   D         NE 
Sbjct: 322 LDKNSRFIGAKRRKSGSVKRFKQDGSTSNNHTAPTDQN-LTPDLTTLDSFGRIARMGNEY 381

Query: 370 LG-PENPSLSGHSR-NVATIRRIIKPVGYSVSVSNNIPDVVVTFLAVRSDGKEVTVNNKF 427
            G  EN +LS  ++     I +I+KP+ ++ SVS+N+ +V+VTFLA+RSDGKE  V+N+F
Sbjct: 382 PGVMENCNLSQKTKIEELDITKILKPMSFTASVSDNVQEVLVTFLALRSDGKEALVDNRF 441

The following BLAST results are available for this feature:

BLAST of Carg06368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028682.1	6.7e-237	100.00	Chromo domain protein LHP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6597211.1	9.0e-226	96.96	Chromo domain protein LHP1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022950639.1	2.5e-223	96.02	chromo domain-containing protein LHP1-like [Cucurbita moschata]	[more]
XP_023540194.1	7.2e-223	96.02	chromo domain-containing protein LHP1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974186.1	1.3e-219	93.91	chromo domain-containing protein LHP1-like [Cucurbita maxima] >XP_022975510.1 ch...	[more]

BLAST of Carg06368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q946J8	1.4e-43	36.39	Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana OX=3702 GN=LHP1 PE...	[more]
Q944N1	1.5e-42	36.78	Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2	[more]
Q339W7	4.0e-35	33.42	Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica O...	[more]
O95931	1.3e-06	37.65	Chromobox protein homolog 7 OS=Homo sapiens OX=9606 GN=CBX7 PE=1 SV=1	[more]
Q8VDS3	1.3e-06	37.65	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1	[more]

BLAST of Carg06368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGE8	1.2e-223	96.02	chromo domain-containing protein LHP1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IGX1	6.1e-220	93.91	chromo domain-containing protein LHP1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3AVS6	5.1e-150	68.85	chromo domain protein LHP1-like OS=Cucumis melo OX=3656 GN=LOC103483372 PE=4 SV=...	[more]
A0A6J1EA84	1.1e-144	67.44	chromo domain-containing protein LHP1-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1EFU6	1.1e-144	67.44	chromo domain-containing protein LHP1-like isoform X1 OS=Cucurbita moschata OX=3...	[more]

BLAST of Carg06368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17690.1	9.8e-45	36.39	like heterochromatin protein (LHP1)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 96..159 e-value: 5.7E-7 score: 39.2
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 97..166 score: 14.602801
IPR008251	Chromo shadow domain	SMART	SM00300	ChS_2	coord: 351..426 e-value: 4.3E-8 score: 42.9
None	No IPR available	GENE3D	2.40.50.40		coord: 82..158 e-value: 8.1E-18 score: 65.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47
None	No IPR available	CDD	cd00024	CD_CSD	coord: 97..156 e-value: 1.0493E-18 score: 77.132
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 97..157 e-value: 1.2E-8 score: 34.7
IPR044251	Chromo domain-containing protein LHP1	PANTHER	PTHR47240	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	coord: 72..426
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 91..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06368-RA	Carg06368-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus