Carg06299 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06299
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RPM1-interacting protein 4-like isoform X1
Location	Carg_Chr06: 7961011 .. 7964346 (-)
RNA-Seq Expression	Carg06299
Synteny	Carg06299

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTGAGTAAGTCATTAATTTCATGGAAGCTTGCTTTTCTTTAGCTAATTGGTTGATCGTTTTCATGCCAGTGCTCTGTATCTGCTTCTATTATGGCCGTCGCTTTCGCCTATTGTGGCCAATTTTTGTTTGTTTTAACTTCTGCTGTGCAGGTTGGACTTGGAAGAAGTTGAAATAGGTTGCTCGGTTTGATTTGGGAGTACAGCTTCGAGATTTCTAGCCTTGTCCTTAGGCTAATGGCTGTGAGTTTTCGAAAGTTCTCTACATTCTCTTCGTTTGTTATTTTGTGATTGCCATGTTCTTGACTGGTTCTGAAGCGATGGAGCTTACTGAATTTCTTCGTCATCTTATTTATAAGTTGCGAACTATTGATATCTATGTTTTGGCCTCATCTTTGAACTTTATATGCATATTTTTATGATGGTTGAGGCTTTCAAGATGGCGTAATCTTGGAATTTCTGGAGGATTTGGTGCTATTTTGCATGTTTGATCTTTCTTTTTTCGCTTTTCTTGTGTTCTGGCTGTTTATGGATGTATACAATGTAGAATCATATTCAATTGGTGTCGAGTTCAGAGATGAACAAGCTCGTTATTTTGTCGTTGATCTGACTATCTTGGAGTCTAGAACTGATTTGACCTTCTCTTCTCTAGCTTACCTTAATTAATGGGTTCAACCTGTAGGCTACTTTTAATTCTCTTTCCATGACTGAGTCTTGCGAACACATTATGTATCTTACTGAACTTTTTAAAGAAAAAGTAATTAGTTCTGTCTTTCTAAGACTTCGTCAAAGATTCAGTCAAGCCCGTTTCTCCTGTCATAAAGAAGAGACCATTTCCACTCCAAGAATTCCTTTAAGATGTCCAATGCCCATGTTTATTGTTCTGATTCATGTGGGAAATCTTATTGATACACAATTCGTAGGCGGTACCATCACGGTGATAACACGAATTTGATACTATACTATTCAGAAACTATGGTAAGTAATTGGTATTGCTTTTAATGTCATGGCTGACAGCCTGAAAGAAGATGGTTATCCTTAGTTTCCACCATGAGCAAGCTCATCTTTCATGAGTTTTGAATTTGGTTTATGTATATAAAGTTGTATGCTTCGAAGGTAAAACAATACGTGCTGATTGCATATCGTCATTTTCTTTCACATGGATGGTTTTGTAACCTTTTCATAGATTTGTTACCATCTAGCTTTTAGGGACTATAAGGAAATTCCTTACCGGAAGTTTTGAGAAGTTGCAGGAATCTGCATGAATTGGAGGAGGATCATATTTGTGTTGCATGTAATTTTAGAATATGCATGAATTCAATCCAGTTTAGAACCATGAATCTAGTTTCTTTGCTTATGGTTGGTCCACTGAAAATGATTTAGTAAGAATGAAAGACATTTTCATCTTCCCCTGCAGCAGAGTTTGCAAGTACCAAAATTTGGGAAGTGGGATGATGGGGAGGATGTCCCGTATACAACCTATTTTGACAATGCAACAAAGGCTAAATCCGAGAGGTTGAATTTAAATGATCCTTCTCACCGAGAGGAGATTTCGGAGCGACAGGAAACTAGAGAAGGTGTTGTGAGGAGGCAAACCGAGTCTCCATTGCACCGGGATGGTTCAGAACTGCCTGGTCAAGATTATGACAGTTTAAAATCAACCACGAGTCGGGGTCAACAAGCATTAAGGCAAAAGTACACACAAGAAGATTTGAGCTTGGAAGATGGTAACACGAAAAAACGCCTTCAATCTCCTTTGGACCATCGAACAAGGGGTCACGTTAGCTTTAACTCCCCTCTTCATCAACACCAGGGGAACAACACGGCCACTGTGAGAAATGGCGCAGCTTCTGATGGCAACATAGAAAATCCATCTCTCCAAACACGACAGCATCCAAGGACCGAAGCAAAAAGCATTGTACCATCTTCGCCGTTACGTGACCGTAGGGGTTCAAGCTCACCTAAAGGAGGTTGTCATGATGGTGTAACTCCCTTGACTCCTGGAAGATCACGTCAACAATCCGCTCCTCGGGGCATTGAAACTGTAGTTTCTTCTTCTCATTTTCTTTTCTTTGTGTTTAATTGCACAAGTAGAGAGTCATCAAAAGATTTCAGTAACAATCAACCAGCTAAAGGTTGATAAAGAAAATGGTGTTTTGAGTGTCTTAATTTCCAGATTTGTTCTTTAGGTATTATCAGGTCTTTTAAACAAAAGCTGCCTAGAATTTGCTGAAATCAAATGATTCATGACTTTGAATGACATGATCTCTTATGTTTGAGCTTGCAGCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCGTCTGAGAACTATACAAGTATTTTCACCAGAGTACGTGAGGAGAGACAAACTGAGGAAGAAGGAGGTTTTCCGGTGGGGACTAACATTTCTCATGCTGACCGTCGTAATCGATCCGATGCCGAAAATTCTAAGGTACATAAATCCAAGTCAATAGATTACAATAAATTTAATCTTTCCCTTATTGAGGACTTAAATTTAATCTTTCCCTTAAATCCAAGTCAATAGATTACAATAAATTTAATATTTGTTATTTGATTACTCGATCTCTTGCTTTGATATCATGCAAAAACAAATTTTTGGGTTCGGTGATTCAACCACAACAATTGTCGTGTTCTCAACACCTTTTCACCACAATTGAGCACGTGTTAGCCATTTTATGCAAACTTTTAGGTGAAAAAAGTTAAAAATCTTTTTTCCTTAAATATTTTCTACGGAGTTGGTAAAAGTTTAGTGATTTATTCTTTGCCTTTGGTACAGAAATGTTGCTGTTTTCCATGGGGAAAGTGACTGCGGGGAAGTTTTTGTTCTTCCAGTAAGGAATGAAAATGATGAGAAATTTTCGTCTAATGGAAACCCGCGTGCCAGCAGGTACGAATCGATAACCATTCTGGAGGAGTTAGAATTTTGAGTGATTTCAAACTTAGATTGATTGATTGATTTTAAGTGTATTTGTCATTTAGTATTCCTTGAAATAGAATGATTGGTTTCAAATCCTATTTTTACTTTTATTGGCTCTACATAGATGAATTTGTGAAATTACCATTTTATTATTATTTTGCATATTAGTAGTGAAGTTCTTATTGTTTTTCCTATTTCTAGTGGTTATTCACCAATTTAACGGCATCGAACTCATTTTATTTCAATGAATGTACTTTCATAAATAGGCAAACACACTACAATGTTGAATTAAGTAAAGCTTCTTTGGTAAAAATTTACACGACATGTTAGGTTTCTATTAACAATTAAAACCTGGACTTTGAGAAATG

mRNA sequence

ATGTCGCTGAGTAAGTTGGACTTGGAAGAAGTTGAAATAGGTTGCTCGCAGAGTTTGCAAGTACCAAAATTTGGGAAGTGGGATGATGGGGAGGATGTCCCGTATACAACCTATTTTGACAATGCAACAAAGGCTAAATCCGAGAGGTTGAATTTAAATGATCCTTCTCACCGAGAGGAGATTTCGGAGCGACAGGAAACTAGAGAAGGTGTTGTGAGGAGGCAAACCGAGTCTCCATTGCACCGGGATGGTTCAGAACTGCCTGGTCAAGATTATGACAGTTTAAAATCAACCACGAGTCGGGGTCAACAAGCATTAAGGCAAAAGTACACACAAGAAGATTTGAGCTTGGAAGATGGTAACACGAAAAAACGCCTTCAATCTCCTTTGGACCATCGAACAAGGGGTCACGTTAGCTTTAACTCCCCTCTTCATCAACACCAGGGGAACAACACGGCCACTGTGAGAAATGGCGCAGCTTCTGATGGCAACATAGAAAATCCATCTCTCCAAACACGACAGCATCCAAGGACCGAAGCAAAAAGCATTGTACCATCTTCGCCGTTACGTGACCGTAGGGGTTCAAGCTCACCTAAAGGAGGTTGTCATGATGGTGTAACTCCCTTGACTCCTGGAAGATCACGTCAACAATCCGCTCCTCGGGGCATTGAAACTCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCGTCTGAGAACTATACAAAGTACGTGAGGAGAGACAAACTGAGGAAGAAGGAGGTTTTCCGGTGGGGACTAACATTTCTCATGCTGACCGTCGTAATCGATCCGATGCCGAAAATTCTAAGAAATGTTGCTGTTTTCCATGGGGAAAGTGACTGCGGGGAAGTTTTTGTTCTTCCAGTAAGGAATGAAAATGATGAGAAATTTTCGTCTAATGGAAACCCGCGTGCCAGCAGGTACGAATCGATAACCATTCTGGAGGAGTTAGAATTTTGAGTGATTTCAAACTTAGATTGATTGATTGATTTTAAGTGTATTTGTCATTTAGTATTCCTTGAAATAGAATGATTGGTTTCAAATCCTATTTTTACTTTTATTGGCTCTACATAGATGAATTTGTGAAATTACCATTTTATTATTATTTTGCATATTAGTAGTGAAGTTCTTATTGTTTTTCCTATTTCTAGTGGTTATTCACCAATTTAACGGCATCGAACTCATTTTATTTCAATGAATGTACTTTCATAAATAGGCAAACACACTACAATGTTGAATTAAGTAAAGCTTCTTTGGTAAAAATTTACACGACATGTTAGGTTTCTATTAACAATTAAAACCTGGACTTTGAGAAATG

Coding sequence (CDS)

ATGTCGCTGAGTAAGTTGGACTTGGAAGAAGTTGAAATAGGTTGCTCGCAGAGTTTGCAAGTACCAAAATTTGGGAAGTGGGATGATGGGGAGGATGTCCCGTATACAACCTATTTTGACAATGCAACAAAGGCTAAATCCGAGAGGTTGAATTTAAATGATCCTTCTCACCGAGAGGAGATTTCGGAGCGACAGGAAACTAGAGAAGGTGTTGTGAGGAGGCAAACCGAGTCTCCATTGCACCGGGATGGTTCAGAACTGCCTGGTCAAGATTATGACAGTTTAAAATCAACCACGAGTCGGGGTCAACAAGCATTAAGGCAAAAGTACACACAAGAAGATTTGAGCTTGGAAGATGGTAACACGAAAAAACGCCTTCAATCTCCTTTGGACCATCGAACAAGGGGTCACGTTAGCTTTAACTCCCCTCTTCATCAACACCAGGGGAACAACACGGCCACTGTGAGAAATGGCGCAGCTTCTGATGGCAACATAGAAAATCCATCTCTCCAAACACGACAGCATCCAAGGACCGAAGCAAAAAGCATTGTACCATCTTCGCCGTTACGTGACCGTAGGGGTTCAAGCTCACCTAAAGGAGGTTGTCATGATGGTGTAACTCCCTTGACTCCTGGAAGATCACGTCAACAATCCGCTCCTCGGGGCATTGAAACTCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCGTCTGAGAACTATACAAAGTACGTGAGGAGAGACAAACTGAGGAAGAAGGAGGTTTTCCGGTGGGGACTAACATTTCTCATGCTGACCGTCGTAATCGATCCGATGCCGAAAATTCTAAGAAATGTTGCTGTTTTCCATGGGGAAAGTGACTGCGGGGAAGTTTTTGTTCTTCCAGTAAGGAATGAAAATGATGAGAAATTTTCGTCTAATGGAAACCCGCGTGCCAGCAGGTACGAATCGATAACCATTCTGGAGGAGTTAGAATTTTGA

Protein sequence

MSLSKLDLEEVEIGCSQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGSSSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRRDKLRKKEVFRWGLTFLMLTVVIDPMPKILRNVAVFHGESDCGEVFVLPVRNENDEKFSSNGNPRASRYESITILEELEF

Homology

[Close]

BLAST of Carg06299 vs. NCBI nr
Match: KAG7028751.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 667.5 bits (1721), Expect = 5.8e-188
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0


Query: 1   MSLSKLDLEEVEIGCSQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREE 60
           MSLSKLDLEEVEIGCSQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREE
Sbjct: 1   MSLSKLDLEEVEIGCSQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREE 60

Query: 61  ISERQETREGVVRRQTESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDG 120
           ISERQETREGVVRRQTESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDG
Sbjct: 61  ISERQETREGVVRRQTESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDG 120

Query: 121 NTKKRLQSPLDHRTRGHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEA 180
           NTKKRLQSPLDHRTRGHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEA
Sbjct: 121 NTKKRLQSPLDHRTRGHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEA 180

Query: 181 KSIVPSSPLRDRRGSSSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDE 240
           KSIVPSSPLRDRRGSSSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDE
Sbjct: 181 KSIVPSSPLRDRRGSSSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDE 240

Query: 241 SDPTSSENYTKYVRRDKLRKKEVFRWGLTFLMLTVVIDPMPKILRNVAVFHGESDCGEVF 300
           SDPTSSENYTKYVRRDKLRKKEVFRWGLTFLMLTVVIDPMPKILRNVAVFHGESDCGEVF
Sbjct: 241 SDPTSSENYTKYVRRDKLRKKEVFRWGLTFLMLTVVIDPMPKILRNVAVFHGESDCGEVF 300

Query: 301 VLPVRNENDEKFSSNGNPRASRYESITILEELEF 335
           VLPVRNENDEKFSSNGNPRASRYESITILEELEF
Sbjct: 301 VLPVRNENDEKFSSNGNPRASRYESITILEELEF 334

[Close]

BLAST of Carg06299 vs. NCBI nr
Match: KAG6597281.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 469.5 bits (1207), Expect = 2.3e-128
Identity = 235/240 (97.92%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 16  SQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 75
           +QSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ
Sbjct: 2   AQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 61

Query: 76  TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 135
           TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR
Sbjct: 62  TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 121

Query: 136 GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS 195
           GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS
Sbjct: 122 GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS 181

Query: 196 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 255
           SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 182 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 241

[Close]

BLAST of Carg06299 vs. NCBI nr
Match: XP_022940820.1 (RPM1-interacting protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 461.1 bits (1185), Expect = 8.3e-126
Identity = 231/240 (96.25%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 16  SQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 75
           +QSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ
Sbjct: 2   AQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 61

Query: 76  TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 135
           TESPLHRDGSELPGQD+DSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR
Sbjct: 62  TESPLHRDGSELPGQDHDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 121

Query: 136 GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS 195
           GHVSFNSPLHQ Q NNTATVRNGAASDGNIENPSLQTRQHPRTEAKS+VPSSPLRDRRGS
Sbjct: 122 GHVSFNSPLHQRQRNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSVVPSSPLRDRRGS 181

Query: 196 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 255
           SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 182 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 241

[Close]

BLAST of Carg06299 vs. NCBI nr
Match: XP_022940826.1 (RPM1-interacting protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 458.8 bits (1179), Expect = 4.1e-125
Identity = 230/238 (96.64%), Postives = 232/238 (97.48%), Query Frame = 0


Query: 18  SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE 77
           SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE
Sbjct: 3   SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE 62

Query: 78  SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 137
           SPLHRDGSELPGQD+DSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH
Sbjct: 63  SPLHRDGSELPGQDHDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 122

Query: 138 VSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGSSS 197
           VSFNSPLHQ Q NNTATVRNGAASDGNIENPSLQTRQHPRTEAKS+VPSSPLRDRRGSSS
Sbjct: 123 VSFNSPLHQRQRNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSVVPSSPLRDRRGSSS 182

Query: 198 PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 256
           PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 183 PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 240

[Close]

BLAST of Carg06299 vs. NCBI nr
Match: XP_023540617.1 (RPM1-interacting protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 440.3 bits (1131), Expect = 1.5e-119
Identity = 220/240 (91.67%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 16  SQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 75
           +QSLQVPKFGKWDDGEDVPYTTYFDNATKA SERL+ NDP  R EISE+ +TREGVV+RQ
Sbjct: 2   AQSLQVPKFGKWDDGEDVPYTTYFDNATKAISERLSSNDPLPRVEISEQHKTREGVVKRQ 61

Query: 76  TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 135
           TESP HRDGSELPGQDYDSLKSTTSRGQQALRQKYTQED+SLEDGNTKKRLQSPLDHRTR
Sbjct: 62  TESPSHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDMSLEDGNTKKRLQSPLDHRTR 121

Query: 136 GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS 195
           GHVSFNSPLHQ QGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKS+VPSSPLRDRRGS
Sbjct: 122 GHVSFNSPLHQRQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSVVPSSPLRDRRGS 181

Query: 196 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 255
           SSPKGGCHDG+TPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 182 SSPKGGCHDGITPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 241

[Close]

BLAST of Carg06299 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-08
Identity = 62/234 (26.50%), Postives = 89/234 (38.03%), Query Frame = 0


Query: 21  VPKFGKWDDGEDVPYTTYFDNATKAK---SERLNLNDPSHREEISERQETREGVVRRQTE 80
           VPKFG W+  E+VPYT YFD A K +   S+ +N NDP +  +              Q++
Sbjct: 6   VPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSD-------------SQSQ 65

Query: 81  SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 140
           +P H   S    +  D    T  R ++ +R +   E     D                  
Sbjct: 66  APPHPPSSRTKPEQVD----TVRRSREHMRSREESELKQFGDAG---------------- 125

Query: 141 VSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGSSS 200
                       N  A  R G AS  N                 S    SPL        
Sbjct: 126 ---------GSSNEAANKRQGRASQNN-----------------SYDNKSPLHK------ 166

Query: 201 PKGGCHDGVTPLTPGRSRQQSAP-RGIETPDRSPTVPRFGDWDESDPTSSENYT 251
                +DG      G+SR +    R  E+P++   VP+FGDWDE++P+S++ YT
Sbjct: 186 ---NSYDGT-----GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYT 166

[Close]

BLAST of Carg06299 vs. ExPASy TrEMBL
Match: A0A6J1FRS3 (RPM1-interacting protein 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446298 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.0e-126
Identity = 231/240 (96.25%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 16  SQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 75
           +QSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ
Sbjct: 2   AQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 61

Query: 76  TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 135
           TESPLHRDGSELPGQD+DSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR
Sbjct: 62  TESPLHRDGSELPGQDHDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 121

Query: 136 GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS 195
           GHVSFNSPLHQ Q NNTATVRNGAASDGNIENPSLQTRQHPRTEAKS+VPSSPLRDRRGS
Sbjct: 122 GHVSFNSPLHQRQRNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSVVPSSPLRDRRGS 181

Query: 196 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 255
           SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 182 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 241

[Close]

BLAST of Carg06299 vs. ExPASy TrEMBL
Match: A0A6J1FJH8 (RPM1-interacting protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446298 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 2.0e-125
Identity = 230/238 (96.64%), Postives = 232/238 (97.48%), Query Frame = 0


Query: 18  SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE 77
           SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE
Sbjct: 3   SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE 62

Query: 78  SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 137
           SPLHRDGSELPGQD+DSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH
Sbjct: 63  SPLHRDGSELPGQDHDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 122

Query: 138 VSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGSSS 197
           VSFNSPLHQ Q NNTATVRNGAASDGNIENPSLQTRQHPRTEAKS+VPSSPLRDRRGSSS
Sbjct: 123 VSFNSPLHQRQRNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSVVPSSPLRDRRGSSS 182

Query: 198 PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 256
           PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 183 PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 240

[Close]

BLAST of Carg06299 vs. ExPASy TrEMBL
Match: A0A6J1IJ64 (RPM1-interacting protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473867 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.3e-112
Identity = 209/240 (87.08%), Postives = 218/240 (90.83%), Query Frame = 0


Query: 16  SQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQ 75
           +QSLQVPKFGKWDDGEDVPYTTYFDNATKA SERLNLNDP  +EEIS++ ETREGVVRRQ
Sbjct: 2   AQSLQVPKFGKWDDGEDVPYTTYFDNATKAISERLNLNDPLQQEEISKQHETREGVVRRQ 61

Query: 76  TESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTR 135
            ESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQE  SLEDGN KK L+SPLDH+TR
Sbjct: 62  AESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLESPLDHQTR 121

Query: 136 GHVSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGS 195
             VSFNSPLHQ QGNN AT+RNGAASD NIENPSL TRQHPRTEAKS+VPSSPLRDRRG 
Sbjct: 122 SWVSFNSPLHQRQGNNMATLRNGAASDSNIENPSLHTRQHPRTEAKSVVPSSPLRDRRGL 181

Query: 196 SSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 255
           SS KGGCHDG+TPLTPGRSRQQSAPRG ETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 182 SSHKGGCHDGITPLTPGRSRQQSAPRGNETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 241

[Close]

BLAST of Carg06299 vs. ExPASy TrEMBL
Match: A0A6J1IFG6 (RPM1-interacting protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473867 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.6e-111
Identity = 208/238 (87.39%), Postives = 216/238 (90.76%), Query Frame = 0


Query: 18  SLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDPSHREEISERQETREGVVRRQTE 77
           SLQVPKFGKWDDGEDVPYTTYFDNATKA SERLNLNDP  +EEIS++ ETREGVVRRQ E
Sbjct: 3   SLQVPKFGKWDDGEDVPYTTYFDNATKAISERLNLNDPLQQEEISKQHETREGVVRRQAE 62

Query: 78  SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 137
           SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQE  SLEDGN KK L+SPLDH+TR  
Sbjct: 63  SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLESPLDHQTRSW 122

Query: 138 VSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGSSS 197
           VSFNSPLHQ QGNN AT+RNGAASD NIENPSL TRQHPRTEAKS+VPSSPLRDRRG SS
Sbjct: 123 VSFNSPLHQRQGNNMATLRNGAASDSNIENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSS 182

Query: 198 PKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWDESDPTSSENYTKYVRR 256
            KGGCHDG+TPLTPGRSRQQSAPRG ETPDRSPTVPRFGDWDESDPTSSENYT    R
Sbjct: 183 HKGGCHDGITPLTPGRSRQQSAPRGNETPDRSPTVPRFGDWDESDPTSSENYTSIFTR 240

[Close]

BLAST of Carg06299 vs. ExPASy TrEMBL
Match: A0A5D3D3I1 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002820 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 170/256 (66.41%), Postives = 199/256 (77.73%), Query Frame = 0


Query: 16  SQSLQVPKFGKWDDGEDVPYTTYFDNATKAKSERLNLNDP-SHREEIS-------ERQET 75
           ++S QVPKFGKWDDG+DVPYTTYFDNATKAK ER+N NDP  HREEIS       E+Q+ 
Sbjct: 35  TRSSQVPKFGKWDDGDDVPYTTYFDNATKAKFERMNPNDPLPHREEISETVRSNYEQQKI 94

Query: 76  RE-GVVRRQTESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRL 135
           +E GV+RRQ ESPLH D  E+ G+DY+ +KS   RGQQ    K+TQEDLS+EDGN KK+L
Sbjct: 95  KEGGVMRRQPESPLHHDALEMSGRDYNGIKSAKRRGQQLSGPKHTQEDLSMEDGNMKKQL 154

Query: 136 QSPLDHRTRGHVSFNSPLHQHQGNNTA-------TVRNGAASDGNIENPSLQTRQHPRTE 195
            SPLDHR+ G VSFNSPLHQ QGNN++       T+RNG  S+ +IEN  L +RQHPRTE
Sbjct: 155 GSPLDHRSMGQVSFNSPLHQRQGNNSSTSNSSKGTMRNGTVSECSIENSPLHSRQHPRTE 214

Query: 196 AKSIVPSSPLRDRRGSSSPKGGCHDGVTPLTPGRSRQQSAPRGIETPDRSPTVPRFGDWD 255
            K++VPSSPLRDRRGSSSP+G  H+G+ PLTPGRSRQ+S PRG ETPDR  TVPRFGDWD
Sbjct: 215 PKTVVPSSPLRDRRGSSSPRGSSHEGLAPLTPGRSRQRSVPRGNETPDRGATVPRFGDWD 274

[Close]

BLAST of Carg06299 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-09
Identity = 62/234 (26.50%), Postives = 89/234 (38.03%), Query Frame = 0


Query: 21  VPKFGKWDDGEDVPYTTYFDNATKAK---SERLNLNDPSHREEISERQETREGVVRRQTE 80
           VPKFG W+  E+VPYT YFD A K +   S+ +N NDP +  +              Q++
Sbjct: 6   VPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSD-------------SQSQ 65

Query: 81  SPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEDLSLEDGNTKKRLQSPLDHRTRGH 140
           +P H   S    +  D    T  R ++ +R +   E     D                  
Sbjct: 66  APPHPPSSRTKPEQVD----TVRRSREHMRSREESELKQFGDAG---------------- 125

Query: 141 VSFNSPLHQHQGNNTATVRNGAASDGNIENPSLQTRQHPRTEAKSIVPSSPLRDRRGSSS 200
                       N  A  R G AS  N                 S    SPL        
Sbjct: 126 ---------GSSNEAANKRQGRASQNN-----------------SYDNKSPLHK------ 166

Query: 201 PKGGCHDGVTPLTPGRSRQQSAP-RGIETPDRSPTVPRFGDWDESDPTSSENYT 251
                +DG      G+SR +    R  E+P++   VP+FGDWDE++P+S++ YT
Sbjct: 186 ---NSYDGT-----GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYT 166

The following BLAST results are available for this feature:

BLAST of Carg06299 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028751.1	5.8e-188	100.00	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6597281.1	2.3e-128	97.92	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022940820.1	8.3e-126	96.25	RPM1-interacting protein 4-like isoform X1 [Cucurbita moschata]	[more]
XP_022940826.1	4.1e-125	96.64	RPM1-interacting protein 4-like isoform X2 [Cucurbita moschata]	[more]
XP_023540617.1	1.5e-119	91.67	RPM1-interacting protein 4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg06299 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	7.3e-08	26.50	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Carg06299 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRS3	4.0e-126	96.25	RPM1-interacting protein 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1FJH8	2.0e-125	96.64	RPM1-interacting protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IJ64	3.3e-112	87.08	RPM1-interacting protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1IFG6	1.6e-111	87.39	RPM1-interacting protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3D3I1	1.3e-84	66.41	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Carg06299 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	5.2e-09	26.50	RPM1 interacting protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 226..251 e-value: 1.2E-8 score: 34.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..224
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 20..251
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 20..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06299-RA	Carg06299-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane