Carg06288 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06288
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 8054840 .. 8056850 (-)
RNA-Seq ExpressionCarg06288
SyntenyCarg06288
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTAACATAACAAGAATTTGAATTACACAGCAAATAGGACTCAAGGCCTGAGGGCGCAGGGTGTATGGATTGGTGTAGGATTTAGGCCTTTGGGTAATCTGGGTAATTAGGTGAATGTGTGGGGTACAGAAATTTACTTAGAATTTTTTTTTTTTTTTTTTTTTACTTTTACTCCATTTGTACTGTATTTTCCCTCCCTATACTTGGACTGATGGAAACAGTGAAAAAAAAAAAAACAAAGAACACTGTGATGAAATAACATTTTATCATCCCAATATCTTCTTGTTCTTTTCTTTCTCTTCTTCCTTGATTATCTTTGTTTGCAGTTCTTTCTGGTCCCAGTAGAGAACTTTGGTACTTATCTCTCGCAGTGCAAAGCAGTCACTCCACCTTCTTATGTTAGAGGATAAGTCATCACAAGGATCAAGTGTTCTTTAGCTATGCTGTGAGCGACACTGCTATTACAGAAAAGTACATCAGATTCATCAAACCTACTATTTCATGACCCTGTGTAAGTCTCATTTTTTGTTGATATGCTCCCTTTCTGTGGTTCTTCTACAATATTCCCCACTACTTTGCAATTCTTTTTTGTTTTCTGTAATGGCGTATGGGAAAGAATCTTATCTAATCCATCATGACTTCCTGCTTCCAAATGTTTGTTTTTTGTTTCTGCCGCTCGCTCCACTCACTCTGCTATTTTTCTCTCTCTTCCTGTATATTTTATACATGTTCTTCCCCCCCTAACTGCATATTTTATATACTTTTCTTTTTAATTTAAGTCATGAGATAGACATTTGCCATTCATCATCATCTGAGATTGTATATAATTTAATTATTATTATTGTGTTTTCTTAGTTCAATAGGTAGAGGTGTAGATTCAAACTTTCGTCGATGTAACAGTTCAAGCCTACCGCTAGTAGATATTGTCATCTTTGGACTTTCCCTTTCGAATTTCCCTTCAAGGTTTTTAAAGCGCGTCTACTAGGGGGAAGTTTCTATACCCTTATAAAGAATGCTTTGTTCTTCTCCCCAACTAATATGAGATCTCACACAAGATCTTAGTTGAGTCATGCTCGTGTTGGCATTATTTGAAATTATATATCTTCTGTTATAATACTTTTAATTATTCATTCAACCGTTGTAGTAGTTCTATGGTAGTCATTTTCAGGTTCTTTAAAGTGGGTGAGTGGGATGATGCTGGTTGTAACTTGTTTATTTAAGTTCAACCACATGTGTGGTTGGAGAATTTGAAGCTTTGATTCCTTAATTAAGGGCATATGCCATTAAATGAGGGGTATATACCTTATAGGAGGCCTGAATAGGTAAAACAAAGCAAAGTATGCTGTTGGGTTTACTTCCATTAATTCCATCCCTCTTCTTAATATATACACAAGGAGGGGTAAAAAAAAAAAGTTCATTTTATCATCAATACATAATTATTGGAATGAATCTAACTCCAGTCACTTCTACATTTCAGGTCCATCCATTAATGAACAACAGAAGAACTCATATTGAAGGTGCAGCGCAGCTCCATAATGGAAATGGCATCGAATCTAGGTATTCTAAACTTGCATTTCCTGAAACGAGTCGATTTTCAGTAAACTTATTGCGTAGTAAACTGTGTTTTAAGAGAAAAATTACCCAAAAAGGAAGGATTTAGAGGCATATTTGTGAAGAGTGAAAGATGGGGGAGAGTATTTTGGTAGGGTCATAGCCAATAGGCATAGGGGGACAAAGATGAGTGTGTGGGGCTAATAAGGAAAGCCAGAGGGCACCCACCCCTTCCTCTCTTCTCTTAGAAAAACACACTCCTGAAGGGTAACTTTCAGGAGCTGCAAATTGGTAAGGCACAGCAGAGCATAGACTAGAAAGAGACAGATATGATTGTATGGAAATGAAAAGAAATGGGCCATGTTGCATTTTGGTCTTGGGGTAGCTTGGTTTCCATTGGTAGTTGCAGGCATGAGGAGCATACCCCAAGTGATGGGGTATTGGGGGGCTTCTAA

mRNA sequence

ATGGCTTTCTTTCTGGTCCCAGTAGAGAACTTTGGTACTTATCTCTCGCAGTGCAAAGCAGTCACTCCACCTTCTTATGTCCATCCATTAATGAACAACAGAAGAACTCATATTGAAGGTGCAGCGCAGCTCCATAATGGAAATGGCATCGAATCTAGGCATGAGGAGCATACCCCAAGTGATGGGGTATTGGGGGGCTTCTAA

Coding sequence (CDS)

ATGGCTTTCTTTCTGGTCCCAGTAGAGAACTTTGGTACTTATCTCTCGCAGTGCAAAGCAGTCACTCCACCTTCTTATGTCCATCCATTAATGAACAACAGAAGAACTCATATTGAAGGTGCAGCGCAGCTCCATAATGGAAATGGCATCGAATCTAGGCATGAGGAGCATACCCCAAGTGATGGGGTATTGGGGGGCTTCTAA

Protein sequence

MAFFLVPVENFGTYLSQCKAVTPPSYVHPLMNNRRTHIEGAAQLHNGNGIESRHEEHTPSDGVLGGF
Homology
[Close]
BLAST of Carg06288 vs. NCBI nr
Match: KAG7028762.1 (hypothetical protein SDJN02_09943, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.5e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MAFFLVPVENFGTYLSQCKAVTPPSYVHPLMNNRRTHIEGAAQLHNGNGIESRHEEHTPS 60
          MAFFLVPVENFGTYLSQCKAVTPPSYVHPLMNNRRTHIEGAAQLHNGNGIESRHEEHTPS
Sbjct: 1  MAFFLVPVENFGTYLSQCKAVTPPSYVHPLMNNRRTHIEGAAQLHNGNGIESRHEEHTPS 60

Query: 61 DGVLGGF 68
          DGVLGGF
Sbjct: 61 DGVLGGF 67

The following BLAST results are available for this feature:
BLAST of Carg06288 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028762.13.5e-31100.00hypothetical protein SDJN02_09943, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06288 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06288 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06288 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06288-RACarg06288-RAmRNA