Carg06270 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06270
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich protein 5 isoform X1
Location	Carg_Chr06: 8184305 .. 8185051 (+)
RNA-Seq Expression	Carg06270
Synteny	Carg06270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCTCTTTGTAATGCTCTTCCTGGCTGTTGTTGCGGCGGCTACGGCGGCGCGTAATGTTCCCGGTGGTGAGAAGGTGCAGTTCGTGGACGCCGTTGAAGTCAAGGCGGCGGAGTTGCCGGCGGCGGGTGGTGATGCTGGTCGTGATGAGAAGACTTTTATCTACGGCGGAGTTGGTGGATTTGCTGGCATGGGCGGGTACGTGTAAAACTATTATTAAATTAAAAAATATATATATTTAGTTTGATAATTATTTTATTTTAATTTTTATCTAATTTTGAAAATTAAATTCTTTTAATTTTTAAAATTTTGAAATCCATAATTGAACAGGTATGCAGGGTTGGGTATGCCGATGCTGGGTGGGTCTGCTGGGATTGGAAAATTTGGTGGAATTGGAGGTTTCGCCGGAATTGGTGACCCGGGTGGCCTCGGCGGTATGGGCGGCGGAGGAGGAGGTGGTGGTGGAATAGGTGGTGTGGCTGGGCATGGAGGTGGCGGAATAGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGAATAGGTGGTATAGTTGGGCATGGACTTGGCGGAGGTGGCGGAATTGGTGGTATACCTGGACATGGACTTGGAGGAGCTGGTGGGGTCGGAGGATCCGGCGGCGGTGACAGTGGAAATGGTGGAACTGGCGGGATCGGAGGATCAGGCGGTGGTGGAGACGGCGGAGCAGGCGTCGTTACCGGTGGCTCTGTTCGACCATAA

mRNA sequence

ATGGAGAAGCTCTTTGTAATGCTCTTCCTGGCTGTTGTTGCGGCGGCTACGGCGGCGCGTAATGTTCCCGGTGGTGAGAAGGTGCAGTTCGTGGACGCCGTTGAAGTCAAGGCGGCGGAGTTGCCGGCGGCGGGTGGTGATGCTGGTCGTGATGAGAAGACTTTTATCTACGGCGGAGTTGGTGGATTTGCTGGCATGGGCGGGTATGCAGGGTTGGGTATGCCGATGCTGGGTGGGTCTGCTGGGATTGGAAAATTTGGTGGAATTGGAGGTTTCGCCGGAATTGGTGACCCGGGTGGCCTCGGCGGTATGGGCGGCGGAGGAGGAGGTGGTGGTGGAATAGGTGGTGTGGCTGGGCATGGAGGTGGCGGAATAGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGAATAGGTGGTATAGTTGGGCATGGACTTGGCGGAGGTGGCGGAATTGGTGGTATACCTGGACATGGACTTGGAGGAGCTGGTGGGGTCGGAGGATCCGGCGGCGGTGACAGTGGAAATGGTGGAACTGGCGGGATCGGAGGATCAGGCGGTGGTGGAGACGGCGGAGCAGGCGTCGTTACCGGTGGCTCTGTTCGACCATAA

Coding sequence (CDS)

ATGGAGAAGCTCTTTGTAATGCTCTTCCTGGCTGTTGTTGCGGCGGCTACGGCGGCGCGTAATGTTCCCGGTGGTGAGAAGGTGCAGTTCGTGGACGCCGTTGAAGTCAAGGCGGCGGAGTTGCCGGCGGCGGGTGGTGATGCTGGTCGTGATGAGAAGACTTTTATCTACGGCGGAGTTGGTGGATTTGCTGGCATGGGCGGGTATGCAGGGTTGGGTATGCCGATGCTGGGTGGGTCTGCTGGGATTGGAAAATTTGGTGGAATTGGAGGTTTCGCCGGAATTGGTGACCCGGGTGGCCTCGGCGGTATGGGCGGCGGAGGAGGAGGTGGTGGTGGAATAGGTGGTGTGGCTGGGCATGGAGGTGGCGGAATAGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGAATAGGTGGTATAGTTGGGCATGGACTTGGCGGAGGTGGCGGAATTGGTGGTATACCTGGACATGGACTTGGAGGAGCTGGTGGGGTCGGAGGATCCGGCGGCGGTGACAGTGGAAATGGTGGAACTGGCGGGATCGGAGGATCAGGCGGTGGTGGAGACGGCGGAGCAGGCGTCGTTACCGGTGGCTCTGTTCGACCATAA

Protein sequence

MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGVGGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGHGGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGTGGIGGSGGGGDGGAGVVTGGSVRP

Homology

[Close]

BLAST of Carg06270 vs. NCBI nr
Match: KAG7028780.1 (hypothetical protein SDJN02_09961, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.8 bits (787), Expect = 7.2e-80
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120

Query: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180
           GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT
Sbjct: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180

Query: 181 GGIGGSGGGGDGGAGVVTGGSVRP 205
           GGIGGSGGGGDGGAGVVTGGSVRP
Sbjct: 181 GGIGGSGGGGDGGAGVVTGGSVRP 204

[Close]

BLAST of Carg06270 vs. NCBI nr
Match: XP_022945139.1 (glycine-rich protein 5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 200/205 (97.56%), Postives = 201/205 (98.05%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVAAATAARNVPG EKVQFVDAV+VKAAEL AAGGDAGRDEKTFIYGGV
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAGGDAGRDEKTFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120

Query: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180
           GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT
Sbjct: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180

Query: 181 GGIGGSGGGGDGGAGVV-TGGSVRP 205
           GGIGGSGGGGDGGAGVV  GGSVRP
Sbjct: 181 GGIGGSGGGGDGGAGVVPVGGSVRP 205

[Close]

BLAST of Carg06270 vs. NCBI nr
Match: XP_022945148.1 (glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-69
Identity = 190/205 (92.68%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVAAATAARNVPG EKVQFVDAV+VKAAEL AAGGDAGRDEKTFIYGGV
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAGGDAGRDEKTFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGG          
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGG---------- 120

Query: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180
           GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT
Sbjct: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180

Query: 181 GGIGGSGGGGDGGAGVV-TGGSVRP 205
           GGIGGSGGGGDGGAGVV  GGSVRP
Sbjct: 181 GGIGGSGGGGDGGAGVVPVGGSVRP 195

[Close]

BLAST of Carg06270 vs. NCBI nr
Match: KAG6597313.1 (hypothetical protein SDJN03_10493, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-67
Identity = 187/202 (92.57%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGV   
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGV--- 120

Query: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180
                   AGHGLGGAGGIGGI GHGLGGGGGIG IPGHGLGGAGGVGGSGGGDSGNGGT
Sbjct: 121 --------AGHGLGGAGGIGGIAGHGLGGGGGIGVIPGHGLGGAGGVGGSGGGDSGNGGT 180

Query: 181 GGIGGSGGGGDGGAGVVT-GGS 202
           GGIGGSGGGGDGGAG VT GGS
Sbjct: 181 GGIGGSGGGGDGGAGGVTVGGS 191

[Close]

BLAST of Carg06270 vs. NCBI nr
Match: XP_022974868.1 (glycine-rich cell wall structural protein [Cucurbita maxima])

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-64
Identity = 187/209 (89.47%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVA   AARNVPG E+VQFVDAVEVKAAELP AGG A RDEK FIYGGV
Sbjct: 1   MEKLFVMLFLAVVA---AARNVPGAEQVQFVDAVEVKAAELPTAGGGAVRDEKNFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGG+GGVAGH
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGMGGVAGH 120

Query: 121 ---GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGN 180
              G GGIGGLAGHGLGGAGGIGGI GHG+GG GGIGGIPGHGLGGAGGVGGSGGGDSGN
Sbjct: 121 GLGGAGGIGGLAGHGLGGAGGIGGIAGHGVGGVGGIGGIPGHGLGGAGGVGGSGGGDSGN 180

Query: 181 GGTGGIGGSGG-GGDGGA-GVVTGGSVRP 205
           GGTGGIGGSGG GGDGGA G+  GGSVRP
Sbjct: 181 GGTGGIGGSGGSGGDGGAGGIPVGGSVRP 206

[Close]

BLAST of Carg06270 vs. ExPASy TrEMBL
Match: A0A6J1G053 (glycine-rich protein 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449466 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.2e-76
Identity = 200/205 (97.56%), Postives = 201/205 (98.05%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVAAATAARNVPG EKVQFVDAV+VKAAEL AAGGDAGRDEKTFIYGGV
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAGGDAGRDEKTFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120

Query: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180
           GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT
Sbjct: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180

Query: 181 GGIGGSGGGGDGGAGVV-TGGSVRP 205
           GGIGGSGGGGDGGAGVV  GGSVRP
Sbjct: 181 GGIGGSGGGGDGGAGVVPVGGSVRP 205

[Close]

BLAST of Carg06270 vs. ExPASy TrEMBL
Match: A0A6J1G005 (glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449466 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.3e-70
Identity = 190/205 (92.68%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVAAATAARNVPG EKVQFVDAV+VKAAEL AAGGDAGRDEKTFIYGGV
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAGGDAGRDEKTFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGG          
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGG---------- 120

Query: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180
           GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT
Sbjct: 121 GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGT 180

Query: 181 GGIGGSGGGGDGGAGVV-TGGSVRP 205
           GGIGGSGGGGDGGAGVV  GGSVRP
Sbjct: 181 GGIGGSGGGGDGGAGVVPVGGSVRP 195

[Close]

BLAST of Carg06270 vs. ExPASy TrEMBL
Match: A0A6J1IHK9 (glycine-rich cell wall structural protein OS=Cucurbita maxima OX=3661 GN=LOC111473638 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.0e-64
Identity = 187/209 (89.47%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
           MEKLFVMLFLAVVA   AARNVPG E+VQFVDAVEVKAAELP AGG A RDEK FIYGGV
Sbjct: 1   MEKLFVMLFLAVVA---AARNVPGAEQVQFVDAVEVKAAELPTAGGGAVRDEKNFIYGGV 60

Query: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGH 120
           GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGG+GGVAGH
Sbjct: 61  GGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGMGGVAGH 120

Query: 121 ---GGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGN 180
              G GGIGGLAGHGLGGAGGIGGI GHG+GG GGIGGIPGHGLGGAGGVGGSGGGDSGN
Sbjct: 121 GLGGAGGIGGLAGHGLGGAGGIGGIAGHGVGGVGGIGGIPGHGLGGAGGVGGSGGGDSGN 180

Query: 181 GGTGGIGGSGG-GGDGGA-GVVTGGSVRP 205
           GGTGGIGGSGG GGDGGA G+  GGSVRP
Sbjct: 181 GGTGGIGGSGGSGGDGGAGGIPVGGSVRP 206

[Close]

BLAST of Carg06270 vs. ExPASy TrEMBL
Match: A0A6J1D0S3 (glycine-rich cell wall structural protein OS=Momordica charantia OX=3673 GN=LOC111015993 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.4e-30
Identity = 144/214 (67.29%), Postives = 156/214 (72.90%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAA-ATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGG 60
           M KL VML LA VAA ATAAR VPGG +++ VDAVEVKAAELPA  GDA RD+K F+YGG
Sbjct: 3   MFKLCVMLLLAAVAAVATAARQVPGGGQMELVDAVEVKAAELPADIGDAVRDQKNFLYGG 62

Query: 61  VGGFAGMGGYAGLG-MPMLGGSAGIGKFGGIGGFAGIGDPG--GLGGMGGGGG--GGGGI 120
           VGGFAGMGGYAG+G MP LGG  GIGKFGGIGG AG G  G  GLGG GGG G  GGGG+
Sbjct: 63  VGGFAGMGGYAGMGVMPGLGGGVGIGKFGGIGGAAGFGKFGGIGLGGPGGGAGLPGGGGL 122

Query: 121 GGVAGHG--------GGGIGGLAGHGLGG-AG-GIGGIVGHGLGGGGGIGGIPGHGLGGA 180
           GG+ G G        GGGIGGLAGHGLGG AG G+GG+ GHGLGG GGIGG+ GHGLGG 
Sbjct: 123 GGIGGGGAAPPAGGVGGGIGGLAGHGLGGLAGHGLGGLAGHGLGGAGGIGGLAGHGLGGL 182

Query: 181 GGVG-GSGGGDSGNGGTGGIGGSGGGGDGGAGVV 198
            G G G  GG  GN   GG+GG  GG  GG G V
Sbjct: 183 PGHGIGDAGGIGGNSPPGGVGGGYGGVGGGPGGV 216

[Close]

BLAST of Carg06270 vs. ExPASy TrEMBL
Match: A0A5D3CZJ9 (Putative PE-PGRS family protein PE_PGRS46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002410 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 131/207 (63.29%), Postives = 142/207 (68.60%), Query Frame = 0


Query: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELP--AAGGDAGRDEKTFIYG 60
           MEKLFV+  L  +A   AAR VPGG++ +FV+AVEVKAAELP  A  GD  RDEK FIYG
Sbjct: 1   MEKLFVLFLLVAIA---AARGVPGGDQAEFVEAVEVKAAELPRNAGRGDNVRDEKNFIYG 60

Query: 61  GVGGFAGMGGYAGL-GMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGV 120
           GVGGFAGMGGYAGL G PMLGGSAGIGKFGGIGG AGIG  G  GG+GGG G G      
Sbjct: 61  GVGGFAGMGGYAGLGGFPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGAGAG------ 120

Query: 121 AGHGGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGN 180
              G  GIGGLAGHGLGGAGGIGG+ GHGLGG GGIG   G G+GG GG          N
Sbjct: 121 ---GASGIGGLAGHGLGGAGGIGGLAGHGLGGAGGIG--TGSGIGGIGG---------SN 178

Query: 181 GGTGGIGGSGGGGDGGAGVVTGGSVRP 205
           GG GG GG+GGG          GS+RP
Sbjct: 181 GGIGGDGGAGGGPP------VSGSIRP 178

[Close]

BLAST of Carg06270 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-08
Identity = 106/217 (48.85%), Postives = 128/217 (58.99%), Query Frame = 0


Query: 6   VMLFLAVVAAATAARNVPG--------GEKVQFVDAVEVKAAEL--PAAGGDAGRDEKTF 65
           V + LA+      AR VPG        G        +  KAA+   P + GD     K  
Sbjct: 8   VCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMHAKAADQLPPKSVGD-----KKC 67

Query: 66  IYG--GVGGFAGMGGYA---GLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGG 125
           I G  GVGGFAG+GG A   GLGMP++GG  GIGK+GGIGG AGIG    +GG+GG GG 
Sbjct: 68  IGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGLGGV 127

Query: 126 GGGIGGVAGHGGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGH--GLGGAGGVG 185
           GGG+GG+     GG+GG    G+GG GG+GG+ G GLGG GG+GG  G   G+GG GG+G
Sbjct: 128 GGGVGGL-----GGVGG----GVGGLGGVGGLGGAGLGGVGGVGGGIGKAGGIGGLGGLG 187

Query: 186 GSGGGDSGNGGTGGIGGSG-GGGDGGAGVVTGGSVRP 205
           G+GGG  G GG G  GG G GGG GG   V GG + P
Sbjct: 188 GAGGGLGGVGGLGKAGGIGVGGGIGGGHGVVGGVIDP 210

The following BLAST results are available for this feature:

BLAST of Carg06270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028780.1	7.2e-80	100.00	hypothetical protein SDJN02_09961, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022945139.1	1.1e-75	97.56	glycine-rich protein 5 isoform X1 [Cucurbita moschata]	[more]
XP_022945148.1	1.5e-69	92.68	glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita moschata]	[more]
KAG6597313.1	1.1e-67	92.57	hypothetical protein SDJN03_10493, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022974868.1	4.2e-64	89.47	glycine-rich cell wall structural protein [Cucurbita maxima]	[more]

BLAST of Carg06270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G053	5.2e-76	97.56	glycine-rich protein 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449466 ...	[more]
A0A6J1G005	7.3e-70	92.68	glycine-rich cell wall structural protein 1 isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1IHK9	2.0e-64	89.47	glycine-rich cell wall structural protein OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1D0S3	7.4e-30	67.29	glycine-rich cell wall structural protein OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5D3CZJ9	1.3e-29	63.29	Putative PE-PGRS family protein PE_PGRS46 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Carg06270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04660.1	4.6e-08	48.85	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 145..155 score: 39.77 coord: 119..134 score: 49.22 coord: 2..18 score: 29.41 coord: 171..189 score: 42.11
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..204
None	No IPR available	PANTHER	PTHR34463:SF12	GLYCINE-RICH PROTEIN	coord: 4..142
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 4..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06270-RA	Carg06270-RA	mRNA