Carg06228 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06228
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L14-2-like
Location	Carg_Chr06: 8421832 .. 8423723 (+)
RNA-Seq Expression	Carg06228
Synteny	Carg06228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGAAAGAACCCTAGGCTCGTCTTCCGTCTCTGTAAAACCCTACAGCCTGAAGATGGTGAGGCTTCTCTTCCTTCGTATTTCTTCTCCCAACTACGAATCGACAGCGCATGGTGGTGTTGTTTTCTTCCTGAGTTTATGTTCTGCGGATTGTTTATGAATTTCGTGTTTTCTGAATTGTTTCTGTAGCCGTTCAAGAGGTATGTTGAGATCGGGAGGGTCGCTCTCGTCAACTATGGCGAAGATTACGGAAAGCTTGTTGTGATTGTCGATGTCATTGACCAGAACAGAGTAATTTTCTCTGCTATTGCTTACTTTTTCGATGAGTATTACTTTTTTAGTTTGAATTTGTATCAATCCTCTTGACATTCATAAGCCACGGAAAACGGAAGCTCTATGCTTCCCCTCTCCTTTGTTTCTTCTGAATTTGATGTTTGCGTTATGATCTAAACATATTAATATCATAAAATTCTGCTATTTATTATCTAGGAAAATTATTTCATAGCTTTTTCAAGTTTGAAGTGATAATTGTTGAAATAATATACAGCATTCCTTATTTAACTTTATGTTCATTTAGTAGGTCGCTAATTAGTGGTCATTGAATCAGTAGTTGGGTTGAGGATGATGCAAATTACTATTGATTGATGGTTAGCTTAAACTGTTTTCTCTGGCTGATTCTCCAGAAACCAAAAGGGGTGTTTCGTTGGTTGTTCAAATTTATGGTTGTTTGATGCGCTGATGAATGTATGTCGCACTGGATGTTTGTAAACATTCTTGCTTGTTTCAATGGATATGTTCCATTTTTTCTTTCCCTACTGAATTTGATTCTAGAGTATCCAATTGTCTTTTGTAGAAAAGAAAGGATTTGGATGGAATTGGTATATGCATGCATTTTATGTAGTCGTTTCCTGGTGACTTGGGTTTAGTTTTTTCAATATTTGACTAGTTGCTAACAACACGAGCATAGCTCAACTATTAAGTCGTTTTTACTTCCTCGGAGAGGTTGTAGGTTTGAATCCCTCCCTCCATGTGATATAACACTGGATTTTTTTTTTTATTAGTTGTTCATTCTATATATTTTTTTCTAATGCCACTGTGTACAGGCTCTGGTGGATGCTCCTGATATGGTCAGGTCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAGCTCATTGAAGCCATGAAGGCTGCTGGTATGCTTTTCAACTGATTTCACTTTCAAATACCTAATTCTTCTACTACCACCCTCAATTGGGGTGTTGTTTTTGTTTGCCTCATGTCTAACCCGTTGTTTCCGTCATGTCAGATGTTCAGAAAAAGTGGGAGGATAGCTCTTGGGGGCGAAAACTTCTCGTTAAAAAACGAAGGGCATCCCTTAACGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGGTCAGTGATGATATGTGATGCGTCTGTACTTTCTCTTGTTCCCCCCACCCTCTTTCTTTAGCATCAATAAGTATAAGAGCTCTAAACCTGCTGTTTCTCTCGTGTTCTTGATTCATGGCAACCTATTTCTCAAATGGATATTATTTATATTTTTGCAGAGAGCTGGATTGGTGAGGCAAGAGCTTGCAAAGCTGAAAAAGAGTGAATCTTAGAAAACCATTTCTTTATCTTCAAATTTTGCTAGAGATCAATTTAAATGTTGTGGATTGCTCTCCCTTTTGCTTCTCAAGCACTTGAGAATTTGGGTTGCTTCTGAAGTGCATGGAGTTTTGGACATCCAAGTGTAGTGAGTACAACTGCATATGCCTTTTGTTTTCTATTTGTTTTTTTGTTTAATGTCTGCTTCACTTGCTTGAACTTTCATTTAGTAAGT

mRNA sequence

AGAGGAAAGAACCCTAGGCTCGTCTTCCGTCTCTGTAAAACCCTACAGCCTGAAGATGCCGTTCAAGAGGTATGTTGAGATCGGGAGGGTCGCTCTCGTCAACTATGGCGAAGATTACGGAAAGCTTGTTGTGATTGTCGATGTCATTGACCAGAACAGAGCTCTGGTGGATGCTCCTGATATGGTCAGGTCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAGCTCATTGAAGCCATGAAGGCTGCTGATGTTCAGAAAAAGTGGGAGGATAGCTCTTGGGGGCGAAAACTTCTCGTTAAAAAACGAAGGGCATCCCTTAACGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGAGAGCTGGATTGGTGAGGCAAGAGCTTGCAAAGCTGAAAAAGAGTGAATCTTAGAAAACCATTTCTTTATCTTCAAATTTTGCTAGAGATCAATTTAAATGTTGTGGATTGCTCTCCCTTTTGCTTCTCAAGCACTTGAGAATTTGGGTTGCTTCTGAAGTGCATGGAGTTTTGGACATCCAAGTGTAGTGAGTACAACTGCATATGCCTTTTGTTTTCTATTTGTTTTTTTGTTTAATGTCTGCTTCACTTGCTTGAACTTTCATTTAGTAAGT

Coding sequence (CDS)

ATGCCGTTCAAGAGGTATGTTGAGATCGGGAGGGTCGCTCTCGTCAACTATGGCGAAGATTACGGAAAGCTTGTTGTGATTGTCGATGTCATTGACCAGAACAGAGCTCTGGTGGATGCTCCTGATATGGTCAGGTCTCAAATGAACTTCAAGAGACTTTCTCTTACTGACATTAAAATTGACATTAAGAGGGTCCCTAGGAAGAAGGAGCTCATTGAAGCCATGAAGGCTGCTGATGTTCAGAAAAAGTGGGAGGATAGCTCTTGGGGGCGAAAACTTCTCGTTAAAAAACGAAGGGCATCCCTTAACGATTTTGATAGGTTCAAGCTAATGTTGGCCAAGATAAAGAGAGCTGGATTGGTGAGGCAAGAGCTTGCAAAGCTGAAAAAGAGTGAATCTTAG

Protein sequence

MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIDIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGLVRQELAKLKKSES

Homology

[Close]

BLAST of Carg06228 vs. NCBI nr
Match: XP_022947422.1 (60S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022974503.1 60S ribosomal protein L14-2-like [Cucurbita maxima] >XP_023521269.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo] >XP_023521270.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo] >XP_023539135.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo] >KAG6597356.1 60S ribosomal protein L14-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028820.1 60S ribosomal protein L14-2 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6597357.1 60S ribosomal protein L14-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028821.1 60S ribosomal protein L14-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. NCBI nr
Match: XP_038881110.1 (60S ribosomal protein L14-2-like [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLV+KRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVRKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. NCBI nr
Match: XP_022924785.1 (60S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022979350.1 60S ribosomal protein L14-2-like [Cucurbita maxima] >XP_023527238.1 60S ribosomal protein L14-2-like [Cucurbita pepo subsp. pepo] >KAG6582391.1 60S ribosomal protein L14-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKL+KSES
Sbjct: 121 VRQELAKLRKSES 133

[Close]

BLAST of Carg06228 vs. NCBI nr
Match: XP_022947433.1 (60S ribosomal protein L14-2-like [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 8.9e-63
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           D KRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DTKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. NCBI nr
Match: XP_022974504.1 (60S ribosomal protein L14-2-like [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASL DFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLTDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. ExPASy Swiss-Prot
Match: Q9T043 (60S ribosomal protein L14-2 OS=Arabidopsis thaliana OX=3702 GN=RPL14B PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-54
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIK+AG+
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKK 131
           VRQELAKLKK
Sbjct: 121 VRQELAKLKK 130

[Close]

BLAST of Carg06228 vs. ExPASy Swiss-Prot
Match: Q9SIM4 (60S ribosomal protein L14-1 OS=Arabidopsis thaliana OX=3702 GN=RPL14A PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.0e-53
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIKRAG+
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKK 131
           VRQELAKLK+
Sbjct: 121 VRQELAKLKR 130

[Close]

BLAST of Carg06228 vs. ExPASy Swiss-Prot
Match: P55844 (Probable 60S ribosomal protein L14 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-53
Identity = 106/131 (80.92%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKR+VEIGRVAL+NYG+DYG+LVVIVDVIDQ RALVDAPDM RS +NFKRLSLTD+KI
Sbjct: 1   MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVP+KK+LI+A++AADV+ KW  SSWGRKL+VKK RA+LNDFDRFK+MLAKIKRA  
Sbjct: 61  DIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAG 120

Query: 121 VRQELAKLKKS 132
           VRQELAKLKK+
Sbjct: 121 VRQELAKLKKT 131

[Close]

BLAST of Carg06228 vs. ExPASy Swiss-Prot
Match: O46160 (60S ribosomal protein L14 OS=Lumbricus rubellus OX=35632 GN=RPL14 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-25
Identity = 65/133 (48.87%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAP--DMVRSQMNFKRLSLTDI 60
           M F+R+VEIGRVA   YG D GKLV IVDVIDQNRALVD P   + R  MNFK L LT++
Sbjct: 1   MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNL 60

Query: 61  KIDIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRA 120
           K       +   + +A +  ++ KKWE+S   +K+  K++R +L DF+RFKLM AK  R 
Sbjct: 61  KAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARN 120

Query: 121 GLVRQELAKLKKS 132
            L++ E  KL+K+
Sbjct: 121 RLIKIEFGKLRKA 133

[Close]

BLAST of Carg06228 vs. ExPASy Swiss-Prot
Match: Q7XYA7 (60S ribosomal protein L14 OS=Griffithsia japonica OX=83288 GN=RPL14 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.8e-25
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPD--MVRSQMNFKRLSLTDI 60
           M F R+VE GRVALV+YGE   KLVVIVD++DQNR LVD+P   + R  +N KR++LT I
Sbjct: 1   MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSI 60

Query: 61  KI-DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKR 120
           K+ DI R     E+     AA V + +  S WG+KL  +++RA+L+DF RFK+M+A++K+
Sbjct: 61  KVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKK 120

Query: 121 AGLVRQELAKLK 130
           +  +  ELAKLK
Sbjct: 121 SKAINAELAKLK 132

[Close]

BLAST of Carg06228 vs. ExPASy TrEMBL
Match: A0A6J1IGF2 (60S ribosomal protein L14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111473179 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. ExPASy TrEMBL
Match: A0A6J1G6E8 (60S ribosomal protein L14-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451284 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. ExPASy TrEMBL
Match: A0A6J1IT01 (60S ribosomal protein L14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111479102 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKL+KSES
Sbjct: 121 VRQELAKLRKSES 133

[Close]

BLAST of Carg06228 vs. ExPASy TrEMBL
Match: A0A6J1EG14 (60S ribosomal protein L14-2-like OS=Cucurbita moschata OX=3662 GN=LOC111432177 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKL+KSES
Sbjct: 121 VRQELAKLRKSES 133

[Close]

BLAST of Carg06228 vs. ExPASy TrEMBL
Match: A0A6J1G6K6 (60S ribosomal protein L14-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451290 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.3e-63
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI
Sbjct: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           D KRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL
Sbjct: 61  DTKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120

Query: 121 VRQELAKLKKSES 134
           VRQELAKLKKSES
Sbjct: 121 VRQELAKLKKSES 133

[Close]

BLAST of Carg06228 vs. TAIR 10
Match: AT4G27090.1 (Ribosomal protein L14 )

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-55
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKRYVEIGRVALVNYGED+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIK+AG+
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRQELAKLKK 131
           VRQELAKLKK
Sbjct: 121 VRQELAKLKK 130

[Close]

BLAST of Carg06228 vs. TAIR 10
Match: AT2G20450.1 (Ribosomal protein L14 )

HSP 1 Score: 210.7 bits (535), Expect = 7.3e-55
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MPFKRYVEIGRVALVNYGEDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYGEDYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPRKKELIEAMKAADVQKKWEDSSWGRKLLVKKRRASLNDFDRFKLMLAKIKRAGL 120
           DI RVP+KK LIEAM+ ADV+ KWE SSWGRKL+V+KRRA+LNDFDRFK+MLAKIKRAG+
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRQELAKLKK 131
           VRQELAKLK+
Sbjct: 121 VRQELAKLKR 130

The following BLAST results are available for this feature:

BLAST of Carg06228 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947422.1	2.3e-63	100.00	60S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022974503.1 60S riboso...	[more]
XP_038881110.1	5.2e-63	99.25	60S ribosomal protein L14-2-like [Benincasa hispida]	[more]
XP_022924785.1	5.2e-63	99.25	60S ribosomal protein L14-2-like [Cucurbita moschata] >XP_022979350.1 60S riboso...	[more]
XP_022947433.1	8.9e-63	99.25	60S ribosomal protein L14-2-like [Cucurbita moschata]	[more]
XP_022974504.1	1.2e-62	99.25	60S ribosomal protein L14-2-like [Cucurbita maxima]	[more]

BLAST of Carg06228 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T043	2.7e-54	84.62	60S ribosomal protein L14-2 OS=Arabidopsis thaliana OX=3702 GN=RPL14B PE=1 SV=1	[more]
Q9SIM4	1.0e-53	83.85	60S ribosomal protein L14-1 OS=Arabidopsis thaliana OX=3702 GN=RPL14A PE=2 SV=1	[more]
P55844	3.9e-53	80.92	Probable 60S ribosomal protein L14 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
O46160	2.0e-25	48.87	60S ribosomal protein L14 OS=Lumbricus rubellus OX=35632 GN=RPL14 PE=3 SV=1	[more]
Q7XYA7	5.8e-25	50.00	60S ribosomal protein L14 OS=Griffithsia japonica OX=83288 GN=RPL14 PE=2 SV=1	[more]

BLAST of Carg06228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IGF2	1.1e-63	100.00	60S ribosomal protein L14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111473179 PE=...	[more]
A0A6J1G6E8	1.1e-63	100.00	60S ribosomal protein L14-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451284 P...	[more]
A0A6J1IT01	2.5e-63	99.25	60S ribosomal protein L14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111479102 PE=...	[more]
A0A6J1EG14	2.5e-63	99.25	60S ribosomal protein L14-2-like OS=Cucurbita moschata OX=3662 GN=LOC111432177 P...	[more]
A0A6J1G6K6	4.3e-63	99.25	60S ribosomal protein L14-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451290 P...	[more]

BLAST of Carg06228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27090.1	1.9e-55	84.62	Ribosomal protein L14	[more]
AT2G20450.1	7.3e-55	83.85	Ribosomal protein L14	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002784	Ribosomal protein L14e domain	PFAM	PF01929	Ribosomal_L14e	coord: 45..117 e-value: 1.2E-25 score: 89.8
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..84 e-value: 1.8E-38 score: 132.6
None	No IPR available	GENE3D	6.10.250.2270		coord: 92..127 e-value: 8.9E-12 score: 46.5
None	No IPR available	PANTHER	PTHR11127:SF11	RIBOSOMAL PROTEIN L14, PUTATIVE-RELATED	coord: 1..131
IPR039660	Ribosomal protein L14	PANTHER	PTHR11127	60S RIBOSOMAL PROTEIN L14	coord: 1..131
IPR041985	Ribosomal protein L14, KOW motif	CDD	cd06088	KOW_RPL14	coord: 7..79 e-value: 2.12E-21 score: 79.4418
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 5..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06228-RA	Carg06228-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome