Carg06167 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06167
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 8719589 .. 8720079 (-)
RNA-Seq ExpressionCarg06167
SyntenyCarg06167
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCCTCCGACGTCCCTCTCGATTGCCCTCGGAGTCCGTCAATTCCAAGATTCGGACCGGCGGCGAGGTGGAGGGGCTTTTGGTATTTATGAACCCTTTTGGTAACTTTGTGTCTTCTTGTAAAGTTTGATTGACTCTGTTCCGACGAAGATTCGATCGTGTTCTTCTAGCAGGACGTGTCTCCTCGGACATCCGGCAGGCTGCGGCACAGCAGCGACTCACTAAACGCCGCCCACAGCGGCGGTTGAAATTGCCGACCACGACACCAAGGTTTGTTTTCCTCTTAGTCACTACTTCAGCTCTTCGAACAGTCATCGATTGTTCCATTTTTAGACGAAAAACGTCGTTGGATATTAAAAGAAACCATTTTTGACAGTTTTACAAAATACTAAATATGACATCAAAAACTTTGGAATTTCGGGAAATATAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAATTAGGAAT

mRNA sequence

TGTCCTCCGACGTCCCTCTCGATTGCCCTCGGAGTCCGTCAATTCCAAGATTCGGACCGGCGGCGAGGTGGAGGGGCTTTTGGACGTGTCTCCTCGGACATCCGGCAGGCTGCGGCACAGCAGCGACTCACTAAACGCCGCCCACAGCGGCGGTTGAAATTGCCGACCACGACACCAAGGAAT

Coding sequence (CDS)

TGTCCTCCGACGTCCCTCTCGATTGCCCTCGGAGTCCGTCAATTCCAAGATTCGGACCGGCGGCGAGGTGGAGGGGCTTTTGGACGTGTCTCCTCGGACATCCGGCAGGCTGCGGCACAGCAGCGACTCACTAAACGCCGCCCACAGCGGCGGTTGAAATTGCCGACCACGACACCAAGGAAT

Protein sequence

CPPTSLSIALGVRQFQDSDRRRGGGAFGRVSSDIRQAAAQQRLTKRRPQRRLKLPTTTPRN
Homology
[Close]
BLAST of Carg06167 vs. NCBI nr
Match: KAG7028880.1 (hypothetical protein SDJN02_10062, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 8.3e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  CPPTSLSIALGVRQFQDSDRRRGGGAFGRVSSDIRQAAAQQRLTKRRPQRRLKLPTTTPR 60
          CPPTSLSIALGVRQFQDSDRRRGGGAFGRVSSDIRQAAAQQRLTKRRPQRRLKLPTTTPR
Sbjct: 1  CPPTSLSIALGVRQFQDSDRRRGGGAFGRVSSDIRQAAAQQRLTKRRPQRRLKLPTTTPR 60

Query: 61 N 62
          N
Sbjct: 61 N 61

The following BLAST results are available for this feature:
BLAST of Carg06167 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028880.18.3e-24100.00hypothetical protein SDJN02_10062, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06167 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06167 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06167 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06167-RACarg06167-RAmRNA