Carg06126 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06126
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protochlorophyllide-dependent translocon component 52, chloroplastic-like
Location	Carg_Chr04: 22057331 .. 22059809 (-)
RNA-Seq Expression	Carg06126
Synteny	Carg06126

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCATTCACAGTGAAAGTTGACAGGGAAGGCGGCAGACCACTGGATTTGATTGTTGAAAAGTTGAAAGCAGATGGTTATGTTGGCAAACTTGATCGGCTCCGTCACAAGTTTATTGCACCTTGTGTCTATTATTTCTTCTCTGATCCAGAGTTGGAGAGCAAGAACGATGAATCTGTATCATCAACTGCAAACGTAAAGGTATATTACACAACAGCATAACCGCATTTCATGTCTTTCGTTTCCTTGCTTTGAGTTGATAATTGTTAAATCTTCGGTAAATCCAAAAGCTTAAGCTGATAGGTTATAGTAAATTAATAATTAAACTAAAAGTTTAAGTCGATGGGTTATGATAAATTTAATGATATCAATACTTCGACTCTTTAACTGCATTTTCTGGGTTTTGATTCATGAAAAGTTTGTTGTTCCAGAAACCGCCAACTGAAACCTCGCAGCGAAGATCGTTCCTGGTATTCTTCTGCATCCCAGTCAGTCCAGGTAAAAGCAGATTGATATGGTCCTTCCCCAGGAACTTTAGCAAATGGATAAACCATATTGTCCCACGATGGATATTTCATATAGGGCAGAACTTGGTTCTAGATTCAGATATGTATTTTCTTCGTGTTGAGGTAAGTGATTTCGTTCATGGATATCGTATTCGCCTGTCGAGTATAGTTCCTGATGATGTTTGTTCTGAATTTAGGAGCACAAATTAGAGGAAATTGGCCCTTCTAATTGGCATAAAGCTTGTTATATGCCTGTTAAATCAGATGCCTTGGTGGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCAAGTTGATTGGGGAGGCAAATATTCTGGCTCCCTCCCTCCACTGCCTCCTAGAGAACAGGTGTTTGAGAGGTACCCTCTAATTTCTGCTACTCAACTTCCCTACTACTCTTTCGAGAGAAGAAATTGGATTAGTGAAGTAGGCTGGTACAATATGTTAGGATCGCATAACAATGCACATACTAGATCTAGATAAACACAAAGAATAGGAGAGAGAAAATACAAGTATGAATATTGGTTAAAGGTTTACACTCGATCTAGATAACACAAAGAAAAAGAGGGAGAAAATATAAGGAAGAATATTGGCGGAAGGTTTACACTCAATCTAGATGAACACAAATAACAAGAGAGAGAAAAGTAAGGAAGAATATTGGTTGAAGGTTTACACTCGATTTAGATGAACACATGAACACAAAGAACAAGAGAGAGTAGATGCAAGAAAGAATATTGGCTAAAGGTTTAGCCTCGATCTAGATGAACACAAAGAACAATAGAGAGAAAATGCAAGAAAGAATATTGGCTAAAGGTCTACACTCGATCTAGATGAACACGAAGAACAAGAGAGAGAAAATGCAAGAAAGAATATTGGCTTAAGGTTTACACTCGATCTAGATGAACACAAAGAACAAAAGAGAGAAAATGCAAGGAAGAATATTGGCTAAAGGTTTACACTCGATCGAGATGAATAGAAAGAAGAAGAGAGAGAAAATGCAAGGAAGAATATTAGCTAAAGGTTTACACTCGATTTAGATGGACACAGAGAACAATAGAGAAAAAATGCAAGGAAGAATATTGGCTAAAGGTTTACACTCGATCTAGATGAACACGAAGAACAAAAGAGAGAAAATGCAAGAAAGAATGTTGGCTAAAAGTTTATATTGATAACGTCAAGTATGTATAACAAGAGAGAATACAGAAAATGCAAAAAATACGTTTTGAAATATCGATTTTAAGTGTGTGAGCAAAAATTAGCTGGAAATATCGATTTCGTAATTGGTTTTTGATTTTCAGGTATTGGAGTCATGTGGTGAACTGCAGAAGCTGCAATGGTGCATATAAAGCTCTGAGAATAGCTGAAGTGGGGCTGCAGGTCATCTCTTTGGCTGCAATTGGAGCTGTGGCATTGACAAAGCAGGGTGTAATTTGTGCAGCAGCTAGGGCCGCCATTGTCACCATTGCAATACTCTGCTTTGCTGCTTCAAAGTGGTTGTCCCATTTCATTCACAAAACTTTCCACTTCCAAGTCTACAATCATGCCCTGGTTTGACACTTTCTTTTCTCCCTCTTTTCATGTCTTTCTTGATTCTACAACTCAATTATAATTAATCTTGTACATATCAAAATGATCATATTTGGATTTGAGATAACCTGAAACTTCGGGGCCATATATATTTTTAGTTTAACCATCGTTATCAATGGCTTCGTTTTCATGACCTCTTTAGCAGATGTCATCAACAAGGCAGGGACACTTTACCTTTACTCGAAAAATTGTTAAACGTCAGGATGAGTTTTAAAAAGATACTTAGTAAGTGACCCTATTGTTGGGGTTAAGAAATAGACTCGTACAATATCTATCATGATTGGTGTGACCTTACTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTAATAGAGTTGGATAGATAGTATTTTCT

mRNA sequence

ATGTGTTCATTCACAGTGAAAGTTGACAGGGAAGGCGGCAGACCACTGGATTTGATTGTTGAAAAGTTGAAAGCAGATGGTTATGTTGGCAAACTTGATCGGCTCCGTCACAAGTTTATTGCACCTTGTGTCTATTATTTCTTCTCTGATCCAGAGTTGGAGAGCAAGAACGATGAATCTGTATCATCAACTGCAAACGTAAAGCGAAGATCGTTCCTGGTATTCTTCTGCATCCCAGTCAGTCCAGGGCAGAACTTGGTTCTAGATTCAGATATGTATTTTCTTCGTGTTGAGGAGCACAAATTAGAGGAAATTGGCCCTTCTAATTGGCATAAAGCTTGTTATATGCCTGTTAAATCAGATGCCTTGGTGGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCAAGTTGATTGGGGAGGCAAATATTCTGGCTCCCTCCCTCCACTGCCTCCTAGAGAACAGGTGTTTGAGAGGTATTGGAGTCATGTGGTGAACTGCAGAAGCTGCAATGGTGCATATAAAGCTCTGAGAATAGCTGAAGTGGGGCTGCAGGTCATCTCTTTGGCTGCAATTGGAGCTGTGGCATTGACAAAGCAGGGTGTAATTTGTGCAGCAGCTAGGGCCGCCATTGTCACCATTGCAATACTCTGCTTTGCTGCTTCAAAGTGGTTGTCCCATTTCATTCACAAAACTTTCCACTTCCAAGTCTACAATCATGCCCTGGTTTGACACTTTCTTTTCTCCCTCTTTTCATGTCTTTCTTGATTCTACAACTCAATTATAATTAATCTTGTACATATCAAAATGATCATATTTGGATTTGAGATAACCTGAAACTTCGGGGCCATATATATTTTTAGTTTAACCATCGTTATCAATGGCTTCGTTTTCATGACCTCTTTAGCAGATGTCATCAACAAGGCAGGGACACTTTACCTTTACTCGAAAAATTGTTAAACGTCAGGATGAGTTTTAAAAAGATACTTAGTAAGTGACCCTATTGTTGGGGTTAAGAAATAGACTCGTACAATATCTATCATGATTGGTGTGACCTTACTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTAATAGAGTTGGATAGATAGTATTTTCT

Coding sequence (CDS)

ATGTGTTCATTCACAGTGAAAGTTGACAGGGAAGGCGGCAGACCACTGGATTTGATTGTTGAAAAGTTGAAAGCAGATGGTTATGTTGGCAAACTTGATCGGCTCCGTCACAAGTTTATTGCACCTTGTGTCTATTATTTCTTCTCTGATCCAGAGTTGGAGAGCAAGAACGATGAATCTGTATCATCAACTGCAAACGTAAAGCGAAGATCGTTCCTGGTATTCTTCTGCATCCCAGTCAGTCCAGGGCAGAACTTGGTTCTAGATTCAGATATGTATTTTCTTCGTGTTGAGGAGCACAAATTAGAGGAAATTGGCCCTTCTAATTGGCATAAAGCTTGTTATATGCCTGTTAAATCAGATGCCTTGGTGGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCAAGTTGATTGGGGAGGCAAATATTCTGGCTCCCTCCCTCCACTGCCTCCTAGAGAACAGGTGTTTGAGAGGTATTGGAGTCATGTGGTGAACTGCAGAAGCTGCAATGGTGCATATAAAGCTCTGAGAATAGCTGAAGTGGGGCTGCAGGTCATCTCTTTGGCTGCAATTGGAGCTGTGGCATTGACAAAGCAGGGTGTAATTTGTGCAGCAGCTAGGGCCGCCATTGTCACCATTGCAATACTCTGCTTTGCTGCTTCAAAGTGGTTGTCCCATTTCATTCACAAAACTTTCCACTTCCAAGTCTACAATCATGCCCTGGTTTGA

Protein sequence

MCSFTVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTANVKRRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVYNHALV

Homology

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BLAST of Carg06126 vs. NCBI nr
Match: KAG7033443.1 (Protochlorophyllide-dependent translocon component 52, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.5 bits (1303), Expect = 1.3e-139
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MCSFTVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDES 60
           MCSFTVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDES
Sbjct: 1   MCSFTVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDES 60

Query: 61  VSSTANVKRRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKS 120
           VSSTANVKRRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKS
Sbjct: 61  VSSTANVKRRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKS 120

Query: 121 DALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALR 180
           DALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALR
Sbjct: 121 DALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALR 180

Query: 181 IAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVY 240
           IAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVY
Sbjct: 181 IAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVY 240

Query: 241 NHALV 246
           NHALV
Sbjct: 241 NHALV 245

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BLAST of Carg06126 vs. NCBI nr
Match: KAG6590272.1 (Protochlorophyllide-dependent translocon component 52, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 487.6 bits (1254), Expect = 6.1e-134
Identity = 240/248 (96.77%), Postives = 240/248 (96.77%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  NVK--------RRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMP 125
           NVK        RRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMP
Sbjct: 332 NVKKPPTETSQRRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMP 391

Query: 126 VKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYK 185
           VKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYK
Sbjct: 392 VKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYK 451

Query: 186 ALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHF 245
           ALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHF
Sbjct: 452 ALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHF 511

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BLAST of Carg06126 vs. NCBI nr
Match: XP_022961138.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 469.2 bits (1206), Expect = 2.2e-128
Identity = 238/276 (86.23%), Postives = 239/276 (86.59%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLK DGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  NVK--------RRSFLVFFCIPVSP----------------------------GQNLVLD 125
           NVK        RRSFLVFFCIPVSP                            GQNLVLD
Sbjct: 332 NVKKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLD 391

Query: 126 SDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 185
           SDMYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL
Sbjct: 392 SDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 451

Query: 186 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 245
           PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA
Sbjct: 452 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 511

[Close]

BLAST of Carg06126 vs. NCBI nr
Match: XP_022961139.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 236/274 (86.13%), Postives = 238/274 (86.86%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLK DGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  N------VKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
           N       +RRSFLVFFCIPVSP                            GQNLVLDSD
Sbjct: 332 NKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLDSD 391

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 392 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 451

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA
Sbjct: 452 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 511

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BLAST of Carg06126 vs. NCBI nr
Match: XP_023533465.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459.5 bits (1181), Expect = 1.8e-125
Identity = 233/274 (85.04%), Postives = 236/274 (86.13%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST+
Sbjct: 272 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTS 331

Query: 66  ------NVKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
                   +RRSFLVFFCIPVSP                            GQNLVLDSD
Sbjct: 332 KKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLDSD 391

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 392 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 451

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA
Sbjct: 452 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 511

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BLAST of Carg06126 vs. ExPASy Swiss-Prot
Match: Q8W496 (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.6e-66
Identity = 132/272 (48.53%), Postives = 168/272 (61.76%), Query Frame = 0


Query: 7   KVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKND----ESVS 66
           K+DREGG+PL++ V+KL   G+  K +     FIAPCVY   +DP  E +++     +  
Sbjct: 288 KIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASD 347

Query: 67  STANVKRRSFLVFFCIPVSP----------------------------GQNLVLDSDMYF 126
             A  KRR  L+F CIPVSP                            GQN +LDSD++ 
Sbjct: 348 KAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHL 407

Query: 127 LRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSG-SLPPLP 186
           L VEE K+ E GP NW KAC++P KSDA VV FRRW NKY+  +VDW GK+    LPP P
Sbjct: 408 LHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTP 467

Query: 187 PREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAI 246
           PREQ+F+RYWSHV NC SC  A+K L   EV LQ+ S+A IG +A+ KQ  +   AR A+
Sbjct: 468 PREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTTMSNVARIAV 527

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BLAST of Carg06126 vs. ExPASy Swiss-Prot
Match: O49931 (Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.1e-04
Identity = 56/240 (23.33%), Postives = 91/240 (37.92%), Query Frame = 0


Query: 38  KFIAPCVYYFFSDPELESKNDESVSSTANVKRRSFLVFFCIPVSPGQNL----------- 97
           +F APCV            N E V     +   S L F C P   G+++           
Sbjct: 306 RFEAPCVL---------QNNREIVDKNGEINHFSGL-FLCRPTGQGKSMLIVRFGATKRS 365

Query: 98  -----------------VLDSDMYFLRVE-EHKLEEIGPSNWHKACYMPVK-SDALVVGF 157
                            V + DM FL  + E  L+E  P+   K  Y+ +K SD  V  +
Sbjct: 366 PLIKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPT---KELYLNLKSSDTWVAEY 425

Query: 158 RRWLNKYAGGQVDWGGKYSGSLPPLPP---------------------------REQVFE 217
           R+W++K   G     G  + SLP  P                               +  
Sbjct: 426 RKWMDKVGHGMPYHFGHSTISLPEEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLAN 485

Query: 218 RYWSHVVNCRSCNGAYKALRIAEVGLQ--VISLAAIGAVALTKQGVICAAARAAIVTIAI 219
           RY+ HV++C+ C+ A KA +I +  L   V++LAA+  +   +Q  +   A A++ ++ +
Sbjct: 486 RYFRHVIHCKGCSSAIKAFQIWKNVLSGVVVALAALAILVSGRQWKVLLLASASLCSVGV 532

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BLAST of Carg06126 vs. ExPASy TrEMBL
Match: A0A6J1HB02 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461739 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.1e-128
Identity = 238/276 (86.23%), Postives = 239/276 (86.59%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLK DGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  NVK--------RRSFLVFFCIPVSP----------------------------GQNLVLD 125
           NVK        RRSFLVFFCIPVSP                            GQNLVLD
Sbjct: 332 NVKKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLD 391

Query: 126 SDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 185
           SDMYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL
Sbjct: 392 SDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 451

Query: 186 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 245
           PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA
Sbjct: 452 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 511

[Close]

BLAST of Carg06126 vs. ExPASy TrEMBL
Match: A0A6J1HD38 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461739 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.2e-128
Identity = 236/274 (86.13%), Postives = 238/274 (86.86%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLK DGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  N------VKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
           N       +RRSFLVFFCIPVSP                            GQNLVLDSD
Sbjct: 332 NKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLDSD 391

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 392 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 451

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA
Sbjct: 452 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 511

[Close]

BLAST of Carg06126 vs. ExPASy TrEMBL
Match: A0A6J1JKK6 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485419 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.3e-125
Identity = 231/276 (83.70%), Postives = 236/276 (85.51%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST+
Sbjct: 271 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTS 330

Query: 66  NV--------KRRSFLVFFCIPVSP----------------------------GQNLVLD 125
            V        +RRSFLVFFCIPVSP                            GQNL+LD
Sbjct: 331 KVQKLPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLILD 390

Query: 126 SDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 185
           SDMYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL
Sbjct: 391 SDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 450

Query: 186 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 245
           PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICA A
Sbjct: 451 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICATA 510

[Close]

BLAST of Carg06126 vs. ExPASy TrEMBL
Match: A0A6J1JIJ9 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485419 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 9.5e-125
Identity = 230/274 (83.94%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST+
Sbjct: 271 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTS 330

Query: 66  ------NVKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
                   +RRSFLVFFCIPVSP                            GQNL+LDSD
Sbjct: 331 KKLPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLILDSD 390

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 391 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 450

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICA ARA
Sbjct: 451 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICATARA 510

[Close]

BLAST of Carg06126 vs. ExPASy TrEMBL
Match: A0A5A7UKJ8 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00860 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.1e-115
Identity = 214/288 (74.31%), Postives = 229/288 (79.51%), Query Frame = 0


Query: 1   MCSFTVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPEL------- 60
           MCSFT   DREGGRPL+L+VEKLKADG+VG+ +R+RHKF APCVYYFFSDPEL       
Sbjct: 1   MCSFTATADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYFFSDPELVQGNVES 60

Query: 61  ESKNDESVSSTANVK--------RRSFLVFFCIPVSP----------------------- 120
            SKNDE+VSSTANVK        RRSFLVF+CIPVSP                       
Sbjct: 61  SSKNDEAVSSTANVKKPPTEISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPR 120

Query: 121 -----GQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGG 180
                GQNL+LDSDMYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGG
Sbjct: 121 WMFHIGQNLILDSDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGG 180

Query: 181 QVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAV 240
           +VDWGGKYSGSLPPLPPRE+VFERY SHVVNC+SCNGAYKAL IAEV LQ IS+AAIGA+
Sbjct: 181 RVDWGGKYSGSLPPLPPREEVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGAL 240

Query: 241 ALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVYNHALV 246
           ALTK GVI A  RA IVTIAILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 241 ALTKNGVISATVRATIVTIAILCFAASKWLSHFIHKTFHFQDYNHALV 288

[Close]

BLAST of Carg06126 vs. TAIR 10
Match: AT4G25650.1 (ACD1-like )

HSP 1 Score: 251.5 bits (641), Expect = 6.8e-67
Identity = 132/272 (48.53%), Postives = 168/272 (61.76%), Query Frame = 0


Query: 7   KVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKND----ESVS 66
           K+DREGG+PL++ V+KL   G+  K +     FIAPCVY   +DP  E +++     +  
Sbjct: 265 KIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASD 324

Query: 67  STANVKRRSFLVFFCIPVSP----------------------------GQNLVLDSDMYF 126
             A  KRR  L+F CIPVSP                            GQN +LDSD++ 
Sbjct: 325 KAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHL 384

Query: 127 LRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSG-SLPPLP 186
           L VEE K+ E GP NW KAC++P KSDA VV FRRW NKY+  +VDW GK+    LPP P
Sbjct: 385 LHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTP 444

Query: 187 PREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAI 246
           PREQ+F+RYWSHV NC SC  A+K L   EV LQ+ S+A IG +A+ KQ  +   AR A+
Sbjct: 445 PREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTTMSNVARIAV 504

[Close]

BLAST of Carg06126 vs. TAIR 10
Match: AT4G25650.2 (ACD1-like )

HSP 1 Score: 251.5 bits (641), Expect = 6.8e-67
Identity = 132/272 (48.53%), Postives = 168/272 (61.76%), Query Frame = 0


Query: 7   KVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKND----ESVS 66
           K+DREGG+PL++ V+KL   G+  K +     FIAPCVY   +DP  E +++     +  
Sbjct: 288 KIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASD 347

Query: 67  STANVKRRSFLVFFCIPVSP----------------------------GQNLVLDSDMYF 126
             A  KRR  L+F CIPVSP                            GQN +LDSD++ 
Sbjct: 348 KAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHL 407

Query: 127 LRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSG-SLPPLP 186
           L VEE K+ E GP NW KAC++P KSDA VV FRRW NKY+  +VDW GK+    LPP P
Sbjct: 408 LHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTP 467

Query: 187 PREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAI 246
           PREQ+F+RYWSHV NC SC  A+K L   EV LQ+ S+A IG +A+ KQ  +   AR A+
Sbjct: 468 PREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTTMSNVARIAV 527

The following BLAST results are available for this feature:

BLAST of Carg06126 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033443.1	1.3e-139	100.00	Protochlorophyllide-dependent translocon component 52, chloroplastic, partial [C...	[more]
KAG6590272.1	6.1e-134	96.77	Protochlorophyllide-dependent translocon component 52, chloroplastic, partial [C...	[more]
XP_022961138.1	2.2e-128	86.23	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
XP_022961139.1	1.9e-127	86.13	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
XP_023533465.1	1.8e-125	85.04	protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucur...	[more]

BLAST of Carg06126 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W496	9.6e-66	48.53	Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop...	[more]
O49931	6.1e-04	23.33	Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1	[more]

BLAST of Carg06126 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB02	1.1e-128	86.23	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
A0A6J1HD38	9.2e-128	86.13	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
A0A6J1JKK6	3.3e-125	83.70	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
A0A6J1JIJ9	9.5e-125	83.94	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
A0A5A7UKJ8	3.1e-115	74.31	Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuw...	[more]

BLAST of Carg06126 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25650.1	6.8e-67	48.53	ACD1-like	[more]
AT4G25650.2	6.8e-67	48.53	ACD1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21266:SF43	SUBFAMILY NOT NAMED	coord: 7..84
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 7..84 coord: 85..243
None	No IPR available	PANTHER	PTHR21266:SF43	SUBFAMILY NOT NAMED	coord: 85..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06126-RA	Carg06126-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0031967	organelle envelope
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity
molecular_function	GO:0046872	metal ion binding