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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GTTCTTCAGCCGTACAACAATGGAGACCGAAACTTCTTGCTTTCATCAGCGCTTGCCGCTAACGTGCGCCGGAGGCATTTTAGCCTCGCTGCTTTGCCTTATGACCATGGCCGAGTTGCTTGCTTAATCTCATGTGAAGCTACCGCTCTTTGTTCTTTCAACTTCGTTGACAATCGTGTTTGGTACAGTGATTCTGTTTCCATAAATTTTCTTCTAATTCTGTTATGATTTTTATTTCTTTTTGCTTTCAAAATGTTAGAAACCTAAAACGACATGTCGTGATTATTTTAATTATTATAATGCAAATGATTAGAAACTGAAATCATATCTCGTCTTCTTTAAACTCTAGTTTCTTCGACCGTCAGTTCATGAAAGATGAGATGAGATTCAACATTCACCAGGTTTTTTGTCATCAAATATTTAGATTATTTTTTTCTTTTCTTAAATGCTTTTGCAAACGTTTTTCTTTTCTCCATCTTCCTTTTCATCCTTTTTCACTTTCCCGCTCGTTTTCTTTCAGCCCTTCCTCAGAACTTCTCGCCCCGATCGCTGAGCTTTTGCTGCTGCACTTCAGGTATGGAAGAGATGATTCTAGGTTCTCTCTATGTTATTCTTCTTGTTCTTCTTTTTTCTGTGTCTTACTAGTTAGGTTGTCGGATCTGGAAGAAGAGGTGAATGACGATTCTAGGTTTTCGATTTTTCCTGAGTGTTCGTTTCCTTCTTGTTTCTTTGTTTTTCTCTTTGGAGAATGAGTTTTACGAGCTTGACCGTTTACTTTTTCGATCTCATGGTTGCTTCGACTTGATTGCGAACAGATCGAACTGTGTAGGTTATTTTCGTGTCTCTTTGTATGCAGGTTCTTCGGAACGTTCAAAATGGAAACCGAAGCTTCTTCTGTTCATCAGCGCTCGTTGCATTTCAGGTAGCAATCGCTGGTAAAGTGTAGTAAGTTTTATTTAT mRNA sequence GTTCTTCAGCCGTACAACAATGGAGACCGAAACTTCTTGCTTTCATCAGCGCTTGCCGCTAACGTGCGCCGGAGGCATTTTAGCCTCGCTGCTTTGCCTTATGACCATGGCCGAGTTGCTTGCTTAATCTCATGTGAAGCTACCGCTCTTTGTTCTTTCAACTTCGTTGACAATCGTGTTTGCCCTTCCTCAGAACTTCTCGCCCCGATCGCTGAGCTTTTGCTGCTGCACTTCAGGTTCTTCGGAACGTTCAAAATGGAAACCGAAGCTTCTTCTGTTCATCAGCGCTCGTTGCATTTCAGGTAGCAATCGCTGGTAAAGTGTAGTAAGTTTTATTTAT Coding sequence (CDS) GTTCTTCAGCCGTACAACAATGGAGACCGAAACTTCTTGCTTTCATCAGCGCTTGCCGCTAACGTGCGCCGGAGGCATTTTAGCCTCGCTGCTTTGCCTTATGACCATGGCCGAGTTGCTTGCTTAATCTCATGTGAAGCTACCGCTCTTTGTTCTTTCAACTTCGTTGACAATCGTGTTTGCCCTTCCTCAGAACTTCTCGCCCCGATCGCTGAGCTTTTGCTGCTGCACTTCAGGTTCTTCGGAACGTTCAAAATGGAAACCGAAGCTTCTTCTGTTCATCAGCGCTCGTTGCATTTCAGGTAG Protein sequence VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRVCPSSELLAPIAELLLLHFRFFGTFKMETEASSVHQRSLHFR
Homology
BLAST of Carg06077 vs. NCBI nr
Match: KAG7033397.1 (hypothetical protein SDJN02_07453, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 206.8 bits (525), Expect = 8.5e-50 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 Query: 1 VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRV 60 VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRV Sbjct: 1 VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRV 60
Query: 61 CPSSELLAPIAELLLLHFRFFGTFKMETEASSVHQRSLHFR 102 CPSSELLAPIAELLLLHFRFFGTFKMETEASSVHQRSLHFR Sbjct: 61 CPSSELLAPIAELLLLHFRFFGTFKMETEASSVHQRSLHFR 101
BLAST of Carg06077 vs. NCBI nr
Match: KAG6602710.1 (hypothetical protein SDJN03_07943, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 129.0 bits (323), Expect = 2.3e-26 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 Query: 1 VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRV 60 VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRV Sbjct: 20 VLQPYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRV 79
Query: 61 C 62 C Sbjct: 80 C 80
BLAST of Carg06077 vs. NCBI nr
Match: KAG7015912.1 (hypothetical protein SDJN02_21016, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 88.2 bits (217), Expect = 4.4e-14 Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 Query: 4 PYNNGDRNFLLSSALAANVRRRHFSLAALPYDHGRVACLISCEATALCSFNFVDNRVC 62 PYNNGDRNF SSA AA+VRR+HF AA P +GRVAC +S E TALCSFNFV +RVC Sbjct: 43 PYNNGDRNFFYSSAFAASVRRKHFGHAAWPRRYGRVACFVSGEVTALCSFNFVSDRVC 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7033397.1 | 8.5e-50 | 100.00 | hypothetical protein SDJN02_07453, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6602710.1 | 2.3e-26 | 100.00 | hypothetical protein SDJN03_07943, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7015912.1 | 4.4e-14 | 70.69 | hypothetical protein SDJN02_21016, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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