Carg06054 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06054
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function (DUF 3339)
Location	Carg_Chr04: 21690223 .. 21690435 (-)
RNA-Seq Expression	Carg06054
Synteny	Carg06054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGACTGGGGACCGGTTGTTGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

mRNA sequence

ATGAGTGCAGACTGGGGACCGGTTGTTGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Coding sequence (CDS)

ATGAGTGCAGACTGGGGACCGGTTGTTGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Protein sequence

MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAIGIHIHVN

Homology

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_022961461.1 (uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 uncharacterized protein LOC111487624 [Cucurbita maxima] >XP_023522991.1 uncharacterized protein LOC111787076 [Cucurbita pepo subsp. pepo] >XP_023544168.1 uncharacterized protein LOC111803819 [Cucurbita pepo subsp. pepo] >XP_023544180.1 uncharacterized protein LOC111803828 [Cucurbita pepo subsp. pepo] >KAG7033374.1 hypothetical protein SDJN02_07430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 7.0e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          IAIGIHIHVN
Sbjct: 61 IAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_008441321.1 (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 uncharacterized protein LOC105434681 [Cucumis sativus] >XP_038884724.1 uncharacterized protein LOC120075416 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_022134305.1 (uncharacterized protein LOC111006600 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 69
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_022939393.1 (uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 uncharacterized protein LOC111489052 [Cucurbita maxima] >XP_023550674.1 uncharacterized protein LOC111808749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: KAE9588885.1 (hypothetical protein Lalb_Chr22g0360321 [Lupinus albus])

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV+VAVALFIVLSPGLLFQ PARIRVVEFGNMNTSGI+IL+HAII+FCILTILV
Sbjct: 1  MGADWGPVIVAVALFIVLSPGLLFQFPARIRVVEFGNMNTSGISILIHAIIYFCILTILV 60

Query: 61 IAIGIHIHVN 71
          IAIGIH+H+N
Sbjct: 61 IAIGIHVHIN 70

[Close]

BLAST of Carg06054 vs. ExPASy TrEMBL
Match: A0A6J1JT68 (uncharacterized protein LOC111487624 OS=Cucurbita maxima OX=3661 GN=LOC111487624 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          IAIGIHIHVN
Sbjct: 61 IAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. ExPASy TrEMBL
Match: A0A6J1HAF2 (uncharacterized protein LOC111462035 OS=Cucurbita moschata OX=3662 GN=LOC111462035 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          IAIGIHIHVN
Sbjct: 61 IAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. ExPASy TrEMBL
Match: A0A0A0LQ54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.4e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. ExPASy TrEMBL
Match: A0A1S3B3T8 (uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.4e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. ExPASy TrEMBL
Match: A0A6J1JYL4 (uncharacterized protein LOC111489052 OS=Cucurbita maxima OX=3661 GN=LOC111489052 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-26
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV+VAVALFI+LSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of Carg06054 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-25
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MS DWGPV+VAV+LFI+LSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILV
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of Carg06054 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV VAV LF+VLSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 63 IGIHIHV 70
          I IHIH+
Sbjct: 64 IQIHIHI 70

[Close]

BLAST of Carg06054 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV++AV LF+VLSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 INVHIY 67

[Close]

BLAST of Carg06054 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPVVVAV LF++L+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 IRLHIY 67

The following BLAST results are available for this feature:

BLAST of Carg06054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961461.1	7.0e-27	100.00	uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 unchar...	[more]
XP_008441321.1	1.7e-25	97.10	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 u...	[more]
XP_022134305.1	3.0e-25	97.06	uncharacterized protein LOC111006600 [Momordica charantia]	[more]
XP_022939393.1	3.0e-25	97.10	uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 unchar...	[more]
KAE9588885.1	8.6e-25	88.57	hypothetical protein Lalb_Chr22g0360321 [Lupinus albus]	[more]

BLAST of Carg06054 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JT68	3.4e-27	100.00	uncharacterized protein LOC111487624 OS=Cucurbita maxima OX=3661 GN=LOC111487624...	[more]
A0A6J1HAF2	3.4e-27	100.00	uncharacterized protein LOC111462035 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A0A0LQ54	8.4e-26	97.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1	[more]
A0A1S3B3T8	8.4e-26	97.10	uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=...	[more]
A0A6J1JYL4	1.4e-25	97.10	uncharacterized protein LOC111489052 OS=Cucurbita maxima OX=3661 GN=LOC111489052...	[more]

BLAST of Carg06054 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40980.1	4.9e-26	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.8e-25	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	3.3e-22	80.60	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.5e-19	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.6e-19	72.73	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..68 e-value: 1.9E-32 score: 111.2
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..70
None	No IPR available	PANTHER	PTHR33128:SF47	GPI-ANCHORED-LIKE PROTEIN (DUF 3339)	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06054-RA	Carg06054-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane